Wall clock time and date at job start Wed Apr 1 2020 04:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00604 * 2 1 4 4 O 1.21723 * 120.00248 * 185.12176 * 3 2 1 5 5 C 1.46424 * 119.99497 * 5.11915 * 3 2 1 6 6 C 1.40108 * 126.85802 * 269.37208 * 5 3 2 7 7 C 1.40061 * 136.36674 * 359.97438 * 6 5 3 8 8 C 1.36072 * 119.47512 * 180.28162 * 7 6 5 9 9 C 1.39489 * 121.56260 * 359.40073 * 8 7 6 10 10 C 1.35818 * 121.84404 * 0.63243 * 9 8 7 11 11 C 1.40943 * 119.54221 * 359.68685 * 10 9 8 12 12 N 1.32133 * 135.42161 * 180.02562 * 11 10 9 13 13 N 1.28449 * 111.39542 * 179.97438 * 12 11 10 14 14 C 1.46493 * 124.16157 * 180.02562 * 13 12 11 15 15 C 1.46508 * 119.99619 * 180.02562 * 2 1 3 16 16 H 1.09002 * 109.46745 * 180.02562 * 15 2 1 17 17 C 1.52989 * 109.47260 * 60.00044 * 15 2 1 18 18 N 1.46496 * 109.47365 * 54.99867 * 17 15 2 19 19 C 1.36938 * 120.00255 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00168 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00375 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99491 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00092 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47413 * 59.99956 * 23 21 19 25 25 H 1.48503 * 109.46773 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47370 * 299.99458 * 23 21 19 27 27 C 1.52999 * 109.46764 * 299.99568 * 15 2 1 28 28 C 1.53002 * 117.50307 * 248.74530 * 27 15 2 29 29 C 1.53004 * 117.49697 * 180.08760 * 27 15 2 30 30 H 1.09003 * 109.46797 * 84.63094 * 1 2 3 31 31 H 1.08998 * 109.47474 * 204.63069 * 1 2 3 32 32 H 1.08994 * 109.46894 * 324.63089 * 1 2 3 33 33 H 1.08006 * 120.25965 * 0.02562 * 7 6 5 34 34 H 1.08000 * 119.21680 * 179.72715 * 8 7 6 35 35 H 1.07999 * 119.07524 * 180.34499 * 9 8 7 36 36 H 1.07991 * 120.23073 * 179.70893 * 10 9 8 37 37 H 1.08999 * 109.46746 * 85.04266 * 14 13 12 38 38 H 1.09003 * 109.47559 * 205.04080 * 14 13 12 39 39 H 1.09001 * 109.47593 * 325.04426 * 14 13 12 40 40 H 1.09007 * 109.47324 * 174.99805 * 17 15 2 41 41 H 1.09001 * 109.47590 * 294.99709 * 17 15 2 42 42 H 0.97002 * 120.00230 * 0.02562 * 18 17 15 43 43 H 0.97000 * 119.99651 * 180.02562 * 22 21 19 44 44 H 1.08996 * 115.55037 * 34.42411 * 27 15 2 45 45 H 1.09001 * 117.49367 * 0.02562 * 28 27 15 46 46 H 1.08996 * 117.49747 * 145.02125 * 28 27 15 47 47 H 1.09001 * 117.49926 * 214.98358 * 29 27 15 48 48 H 1.09005 * 117.49646 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3526 1.1692 -0.0941 5 6 1.4113 2.4327 0.1132 6 6 0.9176 3.2152 -0.9389 7 6 0.9058 3.1423 -2.3376 8 6 0.3108 4.1339 -3.0547 9 6 -0.3015 5.2203 -2.4299 10 6 -0.3241 5.3502 -1.0781 11 6 0.2796 4.3618 -0.2749 12 7 0.4395 4.1721 1.0230 13 7 1.0786 3.0839 1.2622 14 6 1.4087 2.6021 2.6057 15 6 2.1975 -1.2688 -0.0006 16 1 3.2691 -1.0697 0.0000 17 6 1.8278 -2.0705 -1.2501 18 7 2.0706 -1.2554 -2.4429 19 6 1.8112 -1.7670 -3.6863 20 1 1.4273 -2.7713 -3.7877 21 6 2.0418 -0.9948 -4.8166 22 7 2.5093 0.2293 -4.6930 23 14 1.6872 -1.6926 -6.5127 24 1 0.2494 -2.0506 -6.6100 25 1 2.0147 -0.6759 -7.5444 26 1 2.5153 -2.9055 -6.7320 27 6 1.8278 -2.0716 1.2484 28 6 2.9087 -2.2556 2.3156 29 6 2.4943 -3.4363 1.4339 30 1 -0.3633 0.0962 -1.0232 31 1 -0.3634 -0.9341 0.4283 32 1 -0.3633 0.8380 0.5948 33 1 1.3690 2.3077 -2.8430 34 1 0.3080 4.0757 -4.1332 35 1 -0.7667 5.9819 -3.0382 36 1 -0.8015 6.2046 -0.6219 37 1 0.5652 2.0411 3.0079 38 1 2.2843 1.9550 2.5548 39 1 1.6222 3.4519 3.2542 40 1 2.4376 -2.9729 -1.2964 41 1 0.7741 -2.3460 -1.2066 42 1 2.4159 -0.3535 -2.3519 43 1 2.6700 0.7690 -5.4828 44 1 0.7979 -1.9641 1.5885 45 1 3.8830 -1.8044 2.1280 46 1 2.5897 -2.2694 3.3577 47 1 1.9029 -4.2265 1.8965 48 1 3.1964 -3.7620 0.6663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725471220.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:31 Heat of formation + Delta-G solvation = 97.105089 kcal Electronic energy + Delta-G solvation = -31110.409304 eV Core-core repulsion = 27168.114936 eV Total energy + Delta-G solvation = -3942.294368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.56475 -41.11469 -38.83645 -38.62317 -36.61432 -35.84207 -33.85062 -33.29679 -32.78106 -30.76945 -29.69812 -28.47744 -27.90181 -26.18938 -24.66713 -23.85253 -23.36081 -23.03771 -22.85548 -20.92148 -20.15571 -19.14324 -18.82542 -18.45870 -18.10692 -17.37303 -17.13863 -16.68824 -16.35573 -16.17853 -15.60635 -15.37747 -15.16562 -14.99855 -14.87139 -14.71285 -14.50136 -14.20559 -13.94769 -13.85655 -13.82968 -13.27975 -13.14715 -12.89400 -12.78583 -12.74058 -12.70654 -12.63225 -12.40393 -12.23272 -12.14139 -11.78162 -11.55263 -11.36258 -11.22582 -11.12228 -10.94611 -10.90450 -9.78599 -9.64756 -8.97702 -8.73421 -7.89250 -5.19979 -0.47568 0.64566 0.89679 1.29564 1.43978 1.46186 1.49209 1.55257 1.94822 2.56041 2.84957 2.87617 3.06635 3.19073 3.42262 3.57753 3.90220 3.95588 3.99947 4.02421 4.11249 4.15858 4.17673 4.20033 4.22697 4.29407 4.38041 4.42669 4.45956 4.47565 4.62328 4.63213 4.79562 4.81230 4.82685 4.87683 5.03918 5.06975 5.12103 5.20977 5.30900 5.35181 5.46446 5.50769 5.52729 5.60612 5.71377 5.99899 6.12703 6.28988 6.80479 6.84585 7.35494 8.09820 8.33744 9.32503 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.007623 B = 0.005680 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.204790 B = 4928.547915 C = 8061.384502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.572 5.572 3 C 0.599 3.401 4 O -0.565 6.565 5 C -0.031 4.031 6 C -0.144 4.144 7 C -0.086 4.086 8 C -0.125 4.125 9 C -0.090 4.090 10 C -0.084 4.084 11 C 0.043 3.957 12 N -0.290 5.290 13 N -0.211 5.211 14 C 0.066 3.934 15 C 0.169 3.831 16 H 0.071 0.929 17 C 0.147 3.853 18 N -0.742 5.742 19 C -0.248 4.248 20 H 0.076 0.924 21 C -0.069 4.069 22 N -0.960 5.960 23 Si 0.971 3.029 24 H -0.277 1.277 25 H -0.297 1.297 26 H -0.281 1.281 27 C -0.167 4.167 28 C -0.168 4.168 29 C -0.162 4.162 30 H 0.038 0.962 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.032 0.968 41 H 0.035 0.965 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.131 0.869 45 H 0.079 0.921 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 3.233 17.967 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.302 5.302 3 C 0.384 3.616 4 O -0.443 6.443 5 C -0.168 4.168 6 C -0.152 4.152 7 C -0.107 4.107 8 C -0.144 4.144 9 C -0.111 4.111 10 C -0.104 4.104 11 C -0.101 4.101 12 N -0.127 5.127 13 N 0.005 4.995 14 C -0.072 4.072 15 C 0.066 3.934 16 H 0.089 0.911 17 C 0.020 3.980 18 N -0.384 5.384 19 C -0.379 4.379 20 H 0.094 0.906 21 C -0.262 4.262 22 N -0.610 5.610 23 Si 0.800 3.200 24 H -0.203 1.203 25 H -0.224 1.224 26 H -0.207 1.207 27 C -0.186 4.186 28 C -0.204 4.204 29 C -0.199 4.199 30 H 0.057 0.943 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.184 0.816 36 H 0.178 0.822 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.144 0.856 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.148 0.852 45 H 0.097 0.903 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.989 3.509 19.064 20.966 hybrid contribution 0.712 -0.472 -2.325 2.477 sum -7.277 3.037 16.739 18.504 Atomic orbital electron populations 1.21787 0.77754 1.04207 1.01729 1.47590 1.07962 1.04443 1.70173 1.16892 0.85733 0.82661 0.76322 1.90841 1.15131 1.87171 1.51109 1.20743 1.09559 0.98174 0.88306 1.19580 1.04542 0.97115 0.94000 1.20249 0.99570 0.99585 0.91256 1.20919 0.98637 0.94312 1.00571 1.20975 0.98193 0.97706 0.94259 1.20242 1.00390 0.97465 0.92345 1.20993 1.02827 0.97363 0.88929 1.73314 1.17694 1.04411 1.17290 1.45979 1.33294 1.12679 1.07544 1.22803 1.04448 1.03233 0.76701 1.20863 0.96143 0.81956 0.94436 0.91069 1.21108 0.98371 0.93275 0.85221 1.42490 1.78796 1.15641 1.01505 1.19532 1.35445 0.98183 0.84769 0.90613 1.25524 1.02639 0.96747 1.01277 1.69848 1.52364 1.09901 1.28841 0.85264 0.78024 0.76853 0.79863 1.20288 1.22382 1.20720 1.22424 0.99765 1.00148 0.96252 1.23085 0.98247 1.02161 0.96947 1.23023 1.03194 0.91207 1.02499 0.94281 0.87392 0.90929 0.88679 0.85203 0.81578 0.82221 0.85818 0.88595 0.85579 0.94982 0.94734 0.79780 0.94235 0.85161 0.90270 0.86159 0.86044 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.44 9.30 127.77 1.19 3.63 16 2 N -0.57 -19.20 2.24 -827.59 -1.86 -21.06 16 3 C 0.60 23.48 6.40 86.37 0.55 24.03 16 4 O -0.56 -26.79 16.45 -4.42 -0.07 -26.87 16 5 C -0.03 -1.13 4.86 41.05 0.20 -0.93 16 6 C -0.14 -5.57 6.41 -20.07 -0.13 -5.70 16 7 C -0.09 -3.58 10.06 22.21 0.22 -3.36 16 8 C -0.13 -4.18 9.92 22.07 0.22 -3.96 16 9 C -0.09 -2.28 9.89 22.01 0.22 -2.06 16 10 C -0.08 -2.20 10.09 22.37 0.23 -1.98 16 11 C 0.04 1.40 7.53 42.08 0.32 1.72 16 12 N -0.29 -8.77 11.88 -48.85 -0.58 -9.35 16 13 N -0.21 -6.01 3.71 -355.63 -1.32 -7.33 16 14 C 0.07 1.12 11.12 127.77 1.42 2.54 16 15 C 0.17 5.65 2.41 44.99 0.11 5.76 16 16 H 0.07 2.85 6.67 -2.39 -0.02 2.83 16 17 C 0.15 5.87 5.32 86.38 0.46 6.33 16 18 N -0.74 -38.96 5.43 -343.47 -1.87 -40.83 16 19 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 22 N -0.96 -60.09 13.06 21.65 0.28 -59.81 16 23 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 27 C -0.17 -3.73 5.12 -10.79 -0.06 -3.78 16 28 C -0.17 -3.20 10.18 30.62 0.31 -2.89 16 29 C -0.16 -3.17 9.80 30.62 0.30 -2.87 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 2.25 6.50 -2.39 -0.02 2.24 16 32 H 0.07 1.80 7.00 -2.39 -0.02 1.78 16 33 H 0.09 4.88 8.06 -2.91 -0.02 4.85 16 34 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.16 3.03 8.06 -2.92 -0.02 3.01 16 37 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 1.71 7.55 -2.39 -0.02 1.70 16 39 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.03 1.28 7.48 -2.38 -0.02 1.26 16 41 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 42 H 0.37 21.69 7.06 -92.71 -0.65 21.04 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.13 2.32 6.66 -2.39 -0.02 2.30 16 45 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 46 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.08 1.93 7.67 -2.38 -0.02 1.91 16 Total: -1.00 -79.91 399.11 3.80 -76.10 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: 0.33 Total: 40.44 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 6.87 Total: -0.28 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -5.34 Total: -138.38 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.07 Total: -26.87 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -79.91 3.80 -76.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725471220.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.206 kcal (2) G-P(sol) polarization free energy of solvation -79.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds