Wall clock time and date at job start Wed Apr 1 2020 04:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00330 * 2 1 4 4 H 1.07996 * 119.99798 * 204.86841 * 3 2 1 5 5 C 1.38810 * 119.99780 * 24.86907 * 3 2 1 6 6 N 1.31619 * 119.99983 * 5.54500 * 5 3 2 7 7 Si 1.86802 * 119.99919 * 185.55072 * 5 3 2 8 8 H 1.48502 * 109.47266 * 90.00090 * 7 5 3 9 9 H 1.48500 * 109.47016 * 209.99772 * 7 5 3 10 10 H 1.48500 * 109.46913 * 329.99651 * 7 5 3 11 11 C 1.46507 * 119.99816 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47024 * 90.00608 * 11 2 1 13 13 H 1.09007 * 110.88257 * 302.57030 * 12 11 2 14 14 C 1.55158 * 111.03685 * 178.67052 * 12 11 2 15 15 C 1.54311 * 102.86300 * 206.21322 * 14 12 11 16 16 N 1.47029 * 107.27833 * 22.52134 * 15 14 12 17 17 C 1.34772 * 125.65039 * 180.97097 * 16 15 14 18 18 O 1.21578 * 119.99795 * 184.99839 * 17 16 15 19 19 C 1.47679 * 119.99824 * 4.99662 * 17 16 15 20 20 C 1.40141 * 119.89856 * 171.86485 * 19 17 16 21 21 C 1.36437 * 120.45394 * 179.97438 * 20 19 17 22 22 C 1.39067 * 120.14631 * 0.02562 * 21 20 19 23 23 C 1.40683 * 120.15024 * 359.97438 * 22 21 20 24 24 C 1.39117 * 119.90797 * 351.86274 * 19 17 16 25 25 N 1.35865 * 106.93689 * 180.02562 * 23 22 21 26 26 C 1.30066 * 109.56027 * 0.02562 * 25 23 22 27 27 N 1.36085 * 110.12895 * 359.97438 * 26 25 23 28 28 C 1.46506 * 126.30434 * 180.02562 * 27 26 25 29 29 C 1.47432 * 108.69722 * 0.70875 * 16 15 14 30 30 H 1.08997 * 109.47568 * 275.01721 * 1 2 3 31 31 H 1.09007 * 109.47063 * 35.02179 * 1 2 3 32 32 H 1.09001 * 109.47156 * 155.01756 * 1 2 3 33 33 H 0.97005 * 120.00207 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47016 * 330.00299 * 11 2 1 35 35 H 1.09002 * 109.46676 * 210.00074 * 11 2 1 36 36 H 1.08997 * 110.71834 * 324.76604 * 14 12 11 37 37 H 1.08998 * 110.72603 * 87.86216 * 14 12 11 38 38 H 1.09000 * 109.98661 * 263.04718 * 15 14 12 39 39 H 1.09001 * 109.77872 * 141.88186 * 15 14 12 40 40 H 1.07998 * 119.77573 * 0.25099 * 20 19 17 41 41 H 1.08004 * 119.92577 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.24030 * 359.97438 * 24 19 17 43 43 H 1.08007 * 124.93503 * 179.97438 * 26 25 23 44 44 H 1.08999 * 109.46794 * 269.97680 * 28 27 26 45 45 H 1.08994 * 109.46909 * 29.97773 * 28 27 26 46 46 H 1.08998 * 109.47269 * 149.97833 * 28 27 26 47 47 H 1.09000 * 110.36733 * 94.93708 * 29 16 15 48 48 H 1.09003 * 110.36116 * 217.15185 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1546 1.2291 -0.3933 5 6 1.5522 2.3323 0.5056 6 7 0.3721 2.2591 1.0837 7 14 2.4230 3.9789 0.3652 8 1 2.0344 4.6375 -0.9078 9 1 2.0344 4.8434 1.5084 10 1 3.8924 3.7649 0.3835 11 6 2.1974 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5156 -1.8049 -1.9909 14 6 3.2569 -3.0372 -1.4837 15 6 3.9751 -2.9603 -2.8473 16 7 4.0439 -1.5411 -3.2253 17 6 4.5820 -1.0561 -4.3618 18 8 4.6662 0.1450 -4.5302 19 6 5.0696 -1.9837 -5.4024 20 6 5.4700 -1.4860 -6.6497 21 6 5.9227 -2.3326 -7.6191 22 6 5.9900 -3.7003 -7.3762 23 6 5.5920 -4.2170 -6.1297 24 6 5.1300 -3.3489 -5.1416 25 7 5.7668 -5.5632 -6.1852 26 6 6.2338 -5.8939 -7.3532 27 7 6.3899 -4.7848 -8.1263 28 6 6.8908 -4.7504 -9.5026 29 6 3.4209 -0.7371 -2.1581 30 1 -0.3634 0.0899 1.0237 31 1 -0.3633 0.8416 -0.5898 32 1 -0.3633 -0.9315 -0.4340 33 1 -0.0453 3.0601 1.4374 34 1 1.6083 -2.0282 0.5147 35 1 3.1498 -1.1382 0.5144 36 1 3.9769 -3.0775 -0.6663 37 1 2.5868 -3.8961 -1.4481 38 1 3.4121 -3.5166 -3.5968 39 1 4.9815 -3.3693 -2.7577 40 1 5.4242 -0.4245 -6.8435 41 1 6.2296 -1.9398 -8.5773 42 1 4.8220 -3.7332 -4.1804 43 1 6.4641 -6.9022 -7.6644 44 1 7.9742 -4.6312 -9.4921 45 1 6.6325 -5.6816 -10.0066 46 1 6.4383 -3.9126 -10.0331 47 1 4.1792 -0.3764 -1.4631 48 1 2.8707 0.1007 -2.5865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753350076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:08 Heat of formation + Delta-G solvation = 98.557529 kcal Electronic energy + Delta-G solvation = -29511.371052 eV Core-core repulsion = 25569.139666 eV Total energy + Delta-G solvation = -3942.231386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.47553 -40.12783 -37.79711 -36.83267 -35.35145 -34.62710 -32.52695 -31.04922 -30.42550 -29.71993 -28.71326 -27.53895 -25.79091 -25.75161 -24.40199 -23.05661 -22.40988 -21.41561 -20.81573 -19.68212 -19.45550 -17.88709 -17.30668 -16.79633 -16.73050 -16.22885 -15.75234 -15.44731 -14.88569 -14.79211 -14.33831 -14.25642 -13.90704 -13.69649 -13.56957 -13.39266 -13.36035 -13.05896 -12.86265 -12.79733 -12.30391 -12.22380 -12.08905 -11.70915 -11.37037 -11.22668 -11.01232 -10.74829 -10.71764 -10.57652 -10.34803 -10.30361 -10.21893 -10.02070 -9.85935 -9.70675 -9.66869 -8.68976 -8.45792 -8.42665 -8.33297 -6.64642 -5.64147 -3.13383 0.65024 0.89813 2.20080 2.44484 2.98388 3.17946 3.46499 3.52359 3.54649 3.79646 3.89531 4.16405 4.18770 4.52325 4.58092 4.59638 4.66326 4.78657 4.86436 4.99158 5.06726 5.08871 5.12871 5.24386 5.35260 5.47033 5.52453 5.56540 5.75820 5.79155 5.98003 6.04564 6.05498 6.14698 6.17765 6.18680 6.27193 6.44398 6.49842 6.56731 6.62237 6.71791 6.75917 6.84466 6.97091 7.49697 7.50251 7.74899 7.83337 7.90616 8.36908 8.49060 9.33113 9.94988 10.44024 11.40201 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.002430 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.981704 B =11521.166873 C =12555.341540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.603 5.603 3 C -0.251 4.251 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.911 5.911 7 Si 0.902 3.098 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.162 3.838 12 C -0.118 4.118 13 H 0.076 0.924 14 C -0.131 4.131 15 C 0.090 3.910 16 N -0.612 5.612 17 C 0.571 3.429 18 O -0.536 6.536 19 C -0.134 4.134 20 C -0.045 4.045 21 C -0.122 4.122 22 C 0.063 3.937 23 C 0.033 3.967 24 C -0.061 4.061 25 N -0.487 5.487 26 C 0.254 3.746 27 N -0.498 5.498 28 C 0.079 3.921 29 C 0.125 3.875 30 H 0.029 0.971 31 H 0.043 0.957 32 H -0.007 1.007 33 H 0.251 0.749 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.171 0.829 43 H 0.214 0.786 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 -19.370 -20.008 30.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.326 5.326 3 C -0.381 4.381 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.556 5.556 7 Si 0.732 3.268 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.034 3.966 12 C -0.140 4.140 13 H 0.094 0.906 14 C -0.169 4.169 15 C -0.033 4.033 16 N -0.345 5.345 17 C 0.360 3.640 18 O -0.415 6.415 19 C -0.139 4.139 20 C -0.065 4.065 21 C -0.143 4.143 22 C -0.047 4.047 23 C -0.084 4.084 24 C -0.080 4.080 25 N -0.205 5.205 26 C -0.032 4.032 27 N -0.188 5.188 28 C -0.063 4.063 29 C 0.004 3.996 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.012 0.988 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.188 0.812 43 H 0.231 0.769 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.984 -19.075 -19.513 29.803 hybrid contribution 0.676 1.289 -1.034 1.785 sum 12.660 -17.786 -20.547 29.980 Atomic orbital electron populations 1.20805 0.82639 0.95198 0.99317 1.43891 1.01860 1.00597 1.86232 1.19215 0.99122 0.86055 1.33690 0.91244 1.25096 0.97319 0.98680 0.98420 1.70056 1.16050 1.27437 1.42080 0.86282 0.79262 0.84121 0.77108 1.21451 1.21789 1.20411 1.20660 0.96372 0.88650 0.90912 1.23209 0.97198 0.92415 1.01175 0.90595 1.22751 0.99475 0.99199 0.95520 1.22507 1.00176 0.83060 0.97522 1.48581 1.58185 1.08319 1.19432 1.17740 0.77986 0.87619 0.80621 1.90800 1.56653 1.15261 1.78746 1.19706 1.05714 0.92796 0.95697 1.20716 0.94472 1.00432 0.90889 1.19574 1.05342 0.88760 1.00608 1.19112 1.02425 0.90020 0.93123 1.18947 1.05480 0.90323 0.93690 1.22030 0.94940 0.90997 0.99987 1.70472 1.19309 1.11690 1.19056 1.25371 0.98290 0.92937 0.86559 1.45295 1.53565 1.06284 1.13678 1.21999 1.00389 1.04748 0.79203 1.22361 0.95164 0.94508 0.87562 0.95266 0.93815 0.98839 0.93863 0.93986 0.93181 0.90369 0.90221 0.90715 0.90774 0.83889 0.85595 0.81246 0.76921 0.90607 0.89223 0.89698 0.91208 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 8.95 59.84 0.54 4.62 16 2 N -0.60 -14.94 2.87 -181.12 -0.52 -15.46 16 3 C -0.25 -6.87 9.02 -15.06 -0.14 -7.01 16 4 H 0.07 1.87 6.64 -52.49 -0.35 1.52 16 5 C 0.00 0.08 5.24 -17.43 -0.09 -0.01 16 6 N -0.91 -26.90 10.44 55.49 0.58 -26.32 16 7 Si 0.90 22.67 29.56 -169.99 -5.02 17.64 16 8 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 9 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.16 3.17 5.19 -4.04 -0.02 3.15 16 12 C -0.12 -1.96 3.29 -88.47 -0.29 -2.25 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.13 -1.62 6.42 -24.90 -0.16 -1.78 16 15 C 0.09 1.11 4.86 -3.07 -0.01 1.10 16 16 N -0.61 -9.95 3.33 -176.41 -0.59 -10.54 16 17 C 0.57 9.91 7.80 -12.41 -0.10 9.82 16 18 O -0.54 -11.27 16.65 5.30 0.09 -11.18 16 19 C -0.13 -1.90 5.87 -105.00 -0.62 -2.51 16 20 C -0.04 -0.56 9.52 -39.52 -0.38 -0.93 16 21 C -0.12 -1.24 9.97 -39.92 -0.40 -1.64 16 22 C 0.06 0.68 6.87 -83.95 -0.58 0.10 16 23 C 0.03 0.41 7.22 -84.72 -0.61 -0.20 16 24 C -0.06 -0.78 8.64 -38.82 -0.34 -1.11 16 25 N -0.49 -5.65 11.28 -12.06 -0.14 -5.79 16 26 C 0.25 1.95 12.50 -89.77 -1.12 0.82 16 27 N -0.50 -3.74 3.20 -123.13 -0.39 -4.14 16 28 C 0.08 0.23 11.17 59.85 0.67 0.89 16 29 C 0.12 2.33 5.02 -2.53 -0.01 2.31 16 30 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 31 H 0.04 1.18 7.25 -51.93 -0.38 0.80 16 32 H -0.01 -0.15 8.03 -51.93 -0.42 -0.57 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.05 0.98 8.00 -51.93 -0.42 0.57 16 36 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.85 6.69 -51.93 -0.35 0.50 16 39 H 0.07 0.81 6.77 -51.93 -0.35 0.46 16 40 H 0.14 1.75 7.64 -52.49 -0.40 1.35 16 41 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.17 1.99 2.75 -58.59 -0.16 1.83 16 43 H 0.21 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 46 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.07 1.37 7.45 -51.93 -0.39 0.99 16 48 H 0.09 1.89 8.09 -51.93 -0.42 1.47 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -35.99 384.08 -10.80 -46.79 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.94 Total: -2.17 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.65 Total: 5.37 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -1.06 Total: -62.25 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.99 -10.80 -46.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.347 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds