Wall clock time and date at job start Wed Apr 1 2020 04:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 120.00298 * 2 1 4 4 H 1.07998 * 120.00216 * 321.76476 * 3 2 1 5 5 C 1.38813 * 119.99672 * 141.75812 * 3 2 1 6 6 N 1.31623 * 119.99662 * 156.25163 * 5 3 2 7 7 Si 1.86803 * 120.00341 * 336.25373 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.45291 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.45570 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.45993 * 7 5 3 11 11 C 1.46507 * 119.99575 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47102 * 89.99714 * 11 2 1 13 13 H 1.08997 * 110.88658 * 57.42988 * 12 11 2 14 14 C 1.55160 * 111.00444 * 181.34878 * 12 11 2 15 15 C 1.54317 * 102.94449 * 153.58032 * 14 12 11 16 16 N 1.47034 * 107.27011 * 337.80652 * 15 14 12 17 17 C 1.34777 * 125.64831 * 178.90670 * 16 15 14 18 18 O 1.21604 * 120.00045 * 180.02562 * 17 16 15 19 19 C 1.47392 * 120.00094 * 0.04200 * 17 16 15 20 20 N 1.31578 * 126.82312 * 0.02562 * 19 17 16 21 21 N 1.28381 * 111.96526 * 179.97438 * 20 19 17 22 22 C 1.46505 * 124.37117 * 179.97438 * 21 20 19 23 23 C 1.37045 * 111.25980 * 0.02562 * 21 20 19 24 24 C 1.39122 * 134.73163 * 180.02562 * 23 21 20 25 25 C 1.36684 * 119.78514 * 179.26667 * 24 23 21 26 26 C 1.38902 * 120.89452 * 0.61659 * 25 24 23 27 27 C 1.36720 * 120.51835 * 359.60910 * 26 25 24 28 28 C 1.39187 * 119.51673 * 0.02562 * 27 26 25 29 29 C 1.47426 * 108.70079 * 358.94205 * 16 15 14 30 30 H 1.08998 * 109.47162 * 85.35368 * 1 2 3 31 31 H 1.09006 * 109.46395 * 325.36215 * 1 2 3 32 32 H 1.08998 * 109.47252 * 205.35940 * 1 2 3 33 33 H 0.97001 * 119.99496 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.46840 * 210.00311 * 11 2 1 35 35 H 1.08997 * 109.46788 * 329.99867 * 11 2 1 36 36 H 1.08996 * 110.71978 * 271.94165 * 14 12 11 37 37 H 1.08996 * 110.72078 * 35.21396 * 14 12 11 38 38 H 1.09000 * 109.88293 * 218.39546 * 15 14 12 39 39 H 1.08993 * 110.01455 * 97.29539 * 15 14 12 40 40 H 1.09004 * 109.47018 * 90.02162 * 22 21 20 41 41 H 1.08994 * 109.47407 * 210.02462 * 22 21 20 42 42 H 1.09004 * 109.47190 * 330.02804 * 22 21 20 43 43 H 1.08004 * 120.10179 * 359.97363 * 24 23 21 44 44 H 1.07994 * 119.55437 * 180.22584 * 25 24 23 45 45 H 1.07995 * 119.74049 * 179.63488 * 26 25 24 46 46 H 1.08004 * 120.23982 * 179.97438 * 27 26 25 47 47 H 1.08996 * 110.36552 * 265.28740 * 29 16 15 48 48 H 1.08999 * 110.45350 * 143.01346 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7836 2.0209 -0.5788 5 6 3.3145 1.3147 0.7441 6 7 4.2098 2.2211 0.4134 7 14 3.6113 0.2018 2.2148 8 1 4.4384 -0.9592 1.7980 9 1 4.3222 0.9610 3.2746 10 1 2.3093 -0.2815 2.7406 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 3.0020 -0.9452 -1.9920 14 6 3.1981 -3.0699 -1.4855 15 6 2.7692 -3.6571 -2.8466 16 7 1.5087 -3.0025 -3.2267 17 6 0.8193 -3.2258 -4.3631 18 8 -0.2162 -2.6241 -4.5742 19 6 1.3201 -4.1995 -5.3497 20 7 2.4166 -4.9211 -5.2591 21 7 2.5790 -5.6785 -6.2829 22 6 3.7088 -6.5935 -6.4639 23 6 1.5596 -5.5199 -7.1850 24 6 1.2513 -6.0772 -8.4219 25 6 0.1114 -5.6963 -9.0731 26 6 -0.7413 -4.7480 -8.5227 27 6 -0.4598 -4.1812 -7.3108 28 6 0.6920 -4.5604 -6.6274 29 6 1.1244 -2.0609 -2.1594 30 1 -0.3633 0.0832 -1.0243 31 1 -0.3632 0.8456 0.5842 32 1 -0.3634 -0.9286 0.4401 33 1 5.0238 2.3109 0.9332 34 1 3.1499 -1.1388 0.5134 35 1 1.6083 -2.0286 0.5129 36 1 4.2771 -2.9192 -1.4533 37 1 2.8730 -3.7135 -0.6681 38 1 2.6154 -4.7323 -2.7545 39 1 3.5330 -3.4549 -3.5974 40 1 3.4595 -7.5667 -6.0410 41 1 3.9209 -6.7029 -7.5274 42 1 4.5866 -6.1915 -5.9579 43 1 1.9046 -6.8168 -8.8609 44 1 -0.1261 -6.1339 -10.0314 45 1 -1.6340 -4.4564 -9.0561 46 1 -1.1258 -3.4439 -6.8872 47 1 0.4329 -2.5371 -1.4644 48 1 0.6750 -1.1643 -2.5861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753358118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:02 Heat of formation + Delta-G solvation = 96.646877 kcal Electronic energy + Delta-G solvation = -29824.535005 eV Core-core repulsion = 25882.220767 eV Total energy + Delta-G solvation = -3942.314238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.68381 -39.66866 -38.02601 -37.50479 -35.47869 -33.86454 -32.01954 -31.27914 -30.81334 -30.32818 -28.91519 -27.83584 -26.52200 -25.34551 -24.04726 -23.12236 -22.47906 -21.57177 -21.03917 -19.96438 -19.28636 -17.82656 -17.34079 -16.77898 -16.55736 -16.22734 -15.86979 -15.51707 -15.15939 -15.07008 -14.44216 -14.37636 -13.97300 -13.80661 -13.41338 -13.36753 -13.19416 -13.00607 -12.91454 -12.44153 -12.43276 -12.22396 -12.20307 -12.15317 -11.74283 -11.50702 -11.36435 -11.07373 -10.85562 -10.79514 -10.78147 -10.24319 -10.20823 -10.15836 -10.00458 -9.77139 -9.51881 -9.00796 -8.50122 -8.45895 -8.17533 -6.76160 -5.99523 -3.40180 0.62413 1.12474 1.76937 2.07949 3.06436 3.25247 3.29513 3.46707 3.52761 3.62513 3.97566 4.16434 4.43676 4.52810 4.65674 4.70338 4.74170 4.84060 4.91767 4.94109 4.97700 5.13731 5.17959 5.28789 5.34075 5.40364 5.45645 5.64208 5.68073 5.75016 5.93953 5.99421 6.04269 6.14386 6.18072 6.19959 6.27147 6.29759 6.33044 6.36014 6.43352 6.59806 6.64703 6.66433 6.74958 6.81104 6.96072 7.58127 7.69658 8.07243 8.27046 8.41557 9.01611 9.72720 10.14778 11.16249 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.002591 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.564003 B =10803.629194 C =11592.206651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.611 5.611 3 C -0.268 4.268 4 H 0.077 0.923 5 C 0.037 3.963 6 N -0.898 5.898 7 Si 0.874 3.126 8 H -0.285 1.285 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.114 4.114 13 H 0.092 0.908 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.603 5.603 17 C 0.615 3.385 18 O -0.533 6.533 19 C 0.010 3.990 20 N -0.205 5.205 21 N -0.321 5.321 22 C 0.094 3.906 23 C 0.064 3.936 24 C -0.122 4.122 25 C -0.085 4.085 26 C -0.144 4.144 27 C -0.040 4.040 28 C -0.109 4.109 29 C 0.122 3.878 30 H 0.012 0.988 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.139 0.861 47 H 0.064 0.936 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 -22.159 -16.952 28.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.335 5.335 3 C -0.397 4.397 4 H 0.095 0.905 5 C -0.164 4.164 6 N -0.538 5.538 7 Si 0.704 3.296 8 H -0.213 1.213 9 H -0.229 1.229 10 H -0.194 1.194 11 C 0.024 3.976 12 C -0.136 4.136 13 H 0.111 0.889 14 C -0.172 4.172 15 C -0.011 4.011 16 N -0.336 5.336 17 C 0.401 3.599 18 O -0.409 6.409 19 C -0.160 4.160 20 N -0.034 5.034 21 N -0.114 5.114 22 C -0.046 4.046 23 C -0.048 4.048 24 C -0.143 4.143 25 C -0.105 4.105 26 C -0.163 4.163 27 C -0.060 4.060 28 C -0.117 4.117 29 C 0.001 3.999 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.157 0.843 47 H 0.082 0.918 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.209 -22.046 -16.381 27.555 hybrid contribution -0.013 -0.607 0.290 0.673 sum -2.222 -22.653 -16.090 27.875 Atomic orbital electron populations 1.21184 0.84464 0.98790 0.97954 1.44058 1.00800 1.01947 1.86672 1.18745 1.06149 0.90932 1.23847 0.90505 1.25502 0.96753 0.96404 0.97713 1.69908 1.08147 1.36680 1.39110 0.86960 0.77963 0.79929 0.84746 1.21267 1.22922 1.19428 1.21128 0.96699 0.87763 0.92050 1.23091 0.94370 0.95679 1.00416 0.88940 1.22748 1.01258 0.97501 0.95664 1.22038 0.85517 0.96654 0.96866 1.48421 1.24394 1.42027 1.18714 1.16229 0.83284 0.80946 0.79452 1.90795 1.23429 1.49867 1.76762 1.22742 0.94322 1.02243 0.96705 1.73038 1.18119 1.02984 1.09296 1.45203 1.20067 1.33324 1.12825 1.22080 0.86666 0.91939 1.03920 1.19176 0.90880 1.00312 0.94423 1.19730 0.99346 1.02675 0.92535 1.20729 0.93412 0.96858 0.99528 1.20845 1.00771 0.98536 0.96162 1.20453 0.94332 0.97827 0.93424 1.19444 0.97654 0.99880 0.94695 1.22364 0.97701 0.92217 0.87638 0.96964 0.93964 0.95436 0.92746 0.92295 0.94049 0.90078 0.90894 0.91534 0.91219 0.90106 0.89020 0.88455 0.85678 0.85215 0.85246 0.84282 0.91768 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.47 9.91 59.85 0.59 3.06 16 2 N -0.61 -14.46 2.38 -181.11 -0.43 -14.89 16 3 C -0.27 -7.48 9.91 -15.06 -0.15 -7.63 16 4 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 5 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 6 N -0.90 -27.19 13.97 55.49 0.78 -26.42 16 7 Si 0.87 21.81 25.18 -169.99 -4.28 17.53 16 8 H -0.28 -6.77 6.66 56.52 0.38 -6.39 16 9 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.15 3.13 4.08 -4.04 -0.02 3.11 16 12 C -0.11 -2.10 3.29 -88.47 -0.29 -2.39 16 13 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 14 C -0.13 -1.94 6.42 -24.90 -0.16 -2.10 16 15 C 0.11 1.58 5.55 -3.06 -0.02 1.56 16 16 N -0.60 -10.06 3.33 -171.80 -0.57 -10.63 16 17 C 0.61 10.82 7.84 -12.53 -0.10 10.72 16 18 O -0.53 -10.64 16.66 5.27 0.09 -10.55 16 19 C 0.01 0.16 7.16 -80.76 -0.58 -0.42 16 20 N -0.21 -2.74 9.38 34.46 0.32 -2.42 16 21 N -0.32 -3.45 3.74 -65.49 -0.24 -3.70 16 22 C 0.09 0.52 11.24 59.85 0.67 1.19 16 23 C 0.06 0.72 6.85 -84.21 -0.58 0.15 16 24 C -0.12 -1.02 9.94 -39.81 -0.40 -1.41 16 25 C -0.08 -0.66 9.96 -39.90 -0.40 -1.05 16 26 C -0.14 -1.32 9.98 -39.88 -0.40 -1.72 16 27 C -0.04 -0.49 9.87 -39.78 -0.39 -0.89 16 28 C -0.11 -1.52 6.34 -105.05 -0.67 -2.19 16 29 C 0.12 2.17 5.36 -2.53 -0.01 2.15 16 30 H 0.01 0.24 7.54 -51.93 -0.39 -0.15 16 31 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.03 0.49 7.84 -51.93 -0.41 0.08 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.06 1.34 3.47 -51.93 -0.18 1.16 16 35 H 0.04 0.77 7.82 -51.93 -0.41 0.37 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 38 H 0.07 0.86 7.78 -51.93 -0.40 0.45 16 39 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.29 8.09 -51.93 -0.42 -0.13 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.14 1.78 7.65 -52.48 -0.40 1.37 16 47 H 0.06 1.09 8.00 -51.93 -0.42 0.68 16 48 H 0.08 1.66 7.51 -51.93 -0.39 1.27 16 LS Contribution 387.08 15.07 5.83 5.83 Total: -1.00 -34.53 387.08 -8.68 -43.21 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.19 Total: -1.06 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.98 Total: 3.11 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.15 Total: -58.06 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.28 Total: 17.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.53 -8.68 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753358118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.856 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds