Wall clock time and date at job start Wed Apr 1 2020 04:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 120.00298 * 2 1 4 4 H 1.07998 * 120.00216 * 321.76476 * 3 2 1 5 5 C 1.38813 * 119.99672 * 141.75812 * 3 2 1 6 6 N 1.31623 * 119.99662 * 156.25163 * 5 3 2 7 7 Si 1.86803 * 120.00341 * 336.25373 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.45291 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.45570 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.45993 * 7 5 3 11 11 C 1.46507 * 119.99575 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47102 * 89.99714 * 11 2 1 13 13 H 1.08997 * 110.88658 * 57.42988 * 12 11 2 14 14 C 1.55160 * 111.00444 * 181.34878 * 12 11 2 15 15 C 1.54317 * 102.94449 * 153.58032 * 14 12 11 16 16 N 1.47034 * 107.27011 * 337.80652 * 15 14 12 17 17 C 1.34777 * 125.64831 * 178.90670 * 16 15 14 18 18 O 1.21604 * 120.00045 * 180.02562 * 17 16 15 19 19 C 1.47392 * 120.00094 * 0.04200 * 17 16 15 20 20 N 1.31578 * 126.82312 * 0.02562 * 19 17 16 21 21 N 1.28381 * 111.96526 * 179.97438 * 20 19 17 22 22 C 1.46505 * 124.37117 * 179.97438 * 21 20 19 23 23 C 1.37045 * 111.25980 * 0.02562 * 21 20 19 24 24 C 1.39122 * 134.73163 * 180.02562 * 23 21 20 25 25 C 1.36684 * 119.78514 * 179.26667 * 24 23 21 26 26 C 1.38902 * 120.89452 * 0.61659 * 25 24 23 27 27 C 1.36720 * 120.51835 * 359.60910 * 26 25 24 28 28 C 1.39187 * 119.51673 * 0.02562 * 27 26 25 29 29 C 1.47426 * 108.70079 * 358.94205 * 16 15 14 30 30 H 1.08998 * 109.47162 * 85.35368 * 1 2 3 31 31 H 1.09006 * 109.46395 * 325.36215 * 1 2 3 32 32 H 1.08998 * 109.47252 * 205.35940 * 1 2 3 33 33 H 0.97001 * 119.99496 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.46840 * 210.00311 * 11 2 1 35 35 H 1.08997 * 109.46788 * 329.99867 * 11 2 1 36 36 H 1.08996 * 110.71978 * 271.94165 * 14 12 11 37 37 H 1.08996 * 110.72078 * 35.21396 * 14 12 11 38 38 H 1.09000 * 109.88293 * 218.39546 * 15 14 12 39 39 H 1.08993 * 110.01455 * 97.29539 * 15 14 12 40 40 H 1.09004 * 109.47018 * 90.02162 * 22 21 20 41 41 H 1.08994 * 109.47407 * 210.02462 * 22 21 20 42 42 H 1.09004 * 109.47190 * 330.02804 * 22 21 20 43 43 H 1.08004 * 120.10179 * 359.97363 * 24 23 21 44 44 H 1.07994 * 119.55437 * 180.22584 * 25 24 23 45 45 H 1.07995 * 119.74049 * 179.63488 * 26 25 24 46 46 H 1.08004 * 120.23982 * 179.97438 * 27 26 25 47 47 H 1.08996 * 110.36552 * 265.28740 * 29 16 15 48 48 H 1.08999 * 110.45350 * 143.01346 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7836 2.0209 -0.5788 5 6 3.3145 1.3147 0.7441 6 7 4.2098 2.2211 0.4134 7 14 3.6113 0.2018 2.2148 8 1 4.4384 -0.9592 1.7980 9 1 4.3222 0.9610 3.2746 10 1 2.3093 -0.2815 2.7406 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 3.0020 -0.9452 -1.9920 14 6 3.1981 -3.0699 -1.4855 15 6 2.7692 -3.6571 -2.8466 16 7 1.5087 -3.0025 -3.2267 17 6 0.8193 -3.2258 -4.3631 18 8 -0.2162 -2.6241 -4.5742 19 6 1.3201 -4.1995 -5.3497 20 7 2.4166 -4.9211 -5.2591 21 7 2.5790 -5.6785 -6.2829 22 6 3.7088 -6.5935 -6.4639 23 6 1.5596 -5.5199 -7.1850 24 6 1.2513 -6.0772 -8.4219 25 6 0.1114 -5.6963 -9.0731 26 6 -0.7413 -4.7480 -8.5227 27 6 -0.4598 -4.1812 -7.3108 28 6 0.6920 -4.5604 -6.6274 29 6 1.1244 -2.0609 -2.1594 30 1 -0.3633 0.0832 -1.0243 31 1 -0.3632 0.8456 0.5842 32 1 -0.3634 -0.9286 0.4401 33 1 5.0238 2.3109 0.9332 34 1 3.1499 -1.1388 0.5134 35 1 1.6083 -2.0286 0.5129 36 1 4.2771 -2.9192 -1.4533 37 1 2.8730 -3.7135 -0.6681 38 1 2.6154 -4.7323 -2.7545 39 1 3.5330 -3.4549 -3.5974 40 1 3.4595 -7.5667 -6.0410 41 1 3.9209 -6.7029 -7.5274 42 1 4.5866 -6.1915 -5.9579 43 1 1.9046 -6.8168 -8.8609 44 1 -0.1261 -6.1339 -10.0314 45 1 -1.6340 -4.4564 -9.0561 46 1 -1.1258 -3.4439 -6.8872 47 1 0.4329 -2.5371 -1.4644 48 1 0.6750 -1.1643 -2.5861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753358118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:01 Heat of formation + Delta-G solvation = 74.483666 kcal Electronic energy + Delta-G solvation = -29825.496074 eV Core-core repulsion = 25882.220767 eV Total energy + Delta-G solvation = -3943.275307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.54247 -41.00315 -38.99606 -38.75114 -37.20219 -34.71309 -33.89758 -32.89999 -31.53580 -31.13428 -30.24323 -28.93949 -28.10872 -26.91832 -25.12696 -24.19980 -23.31439 -22.88824 -22.49332 -21.47302 -20.36368 -18.88339 -18.70454 -18.16845 -17.62346 -17.35039 -17.17130 -16.80484 -16.42150 -16.15518 -15.95204 -15.32196 -15.14969 -15.07437 -14.83120 -14.76906 -14.39947 -14.04267 -14.01441 -13.80336 -13.79705 -13.55734 -13.44045 -12.94864 -12.93291 -12.85095 -12.70814 -12.52690 -12.35362 -12.15087 -12.04885 -11.92739 -11.78197 -11.56004 -11.39142 -11.25746 -11.02230 -10.60795 -9.81910 -9.76491 -8.99084 -8.73525 -8.19995 -5.59095 -0.25200 0.33652 0.81087 1.32116 1.34819 1.44708 1.56764 1.86331 2.12639 2.43710 2.78447 2.99252 3.07995 3.37747 3.39520 3.56218 3.66913 3.81423 3.98341 4.05725 4.11443 4.27129 4.34054 4.38344 4.39291 4.42507 4.45824 4.51698 4.62066 4.65564 4.71812 4.73897 4.76344 4.84485 4.87199 4.96562 4.99414 5.05138 5.12442 5.17274 5.18801 5.26381 5.42082 5.45106 5.55644 5.69607 5.94778 5.96379 6.17505 6.36136 6.67456 6.98823 7.00140 7.63358 8.05714 9.00245 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.002591 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.564003 B =10803.629194 C =11592.206651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.624 5.624 3 C -0.265 4.265 4 H 0.029 0.971 5 C -0.018 4.018 6 N -0.948 5.948 7 Si 0.946 3.054 8 H -0.261 1.261 9 H -0.309 1.309 10 H -0.258 1.258 11 C 0.146 3.854 12 C -0.110 4.110 13 H 0.053 0.947 14 C -0.121 4.121 15 C 0.118 3.882 16 N -0.607 5.607 17 C 0.608 3.392 18 O -0.574 6.574 19 C -0.036 4.036 20 N -0.200 5.200 21 N -0.308 5.308 22 C 0.080 3.920 23 C 0.051 3.949 24 C -0.108 4.108 25 C -0.082 4.082 26 C -0.130 4.130 27 C -0.080 4.080 28 C -0.139 4.139 29 C 0.131 3.869 30 H 0.009 0.991 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.264 0.736 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.167 0.833 44 H 0.172 0.828 45 H 0.153 0.847 46 H 0.115 0.885 47 H 0.078 0.922 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 -27.243 -18.057 32.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.348 5.348 3 C -0.395 4.395 4 H 0.047 0.953 5 C -0.215 4.215 6 N -0.591 5.591 7 Si 0.773 3.227 8 H -0.187 1.187 9 H -0.237 1.237 10 H -0.182 1.182 11 C 0.021 3.979 12 C -0.132 4.132 13 H 0.071 0.929 14 C -0.160 4.160 15 C -0.004 4.004 16 N -0.339 5.339 17 C 0.397 3.603 18 O -0.452 6.452 19 C -0.203 4.203 20 N -0.033 5.033 21 N -0.103 5.103 22 C -0.058 4.058 23 C -0.061 4.061 24 C -0.129 4.129 25 C -0.102 4.102 26 C -0.149 4.149 27 C -0.101 4.101 28 C -0.146 4.146 29 C 0.009 3.991 30 H 0.028 0.972 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.140 0.860 42 H 0.122 0.878 43 H 0.185 0.815 44 H 0.189 0.811 45 H 0.170 0.830 46 H 0.133 0.867 47 H 0.096 0.904 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.376 -27.178 -17.493 32.350 hybrid contribution -0.297 0.930 0.396 1.054 sum -1.673 -26.248 -17.097 31.370 Atomic orbital electron populations 1.21232 0.82654 1.00338 0.98067 1.44171 1.02083 1.01633 1.86918 1.18552 1.06434 0.91624 1.22895 0.95281 1.26143 0.96397 0.98658 1.00280 1.70045 1.08993 1.39597 1.40511 0.85811 0.78481 0.78448 0.79976 1.18705 1.23749 1.18199 1.21254 0.96176 0.87088 0.93386 1.22820 0.94894 0.96938 0.98519 0.92883 1.22758 1.01502 0.95015 0.96698 1.22115 0.84250 0.97445 0.96546 1.48489 1.25208 1.41851 1.18390 1.16649 0.82865 0.81002 0.79803 1.90745 1.25242 1.51592 1.77671 1.22361 0.96349 1.04036 0.97603 1.72912 1.17110 1.02863 1.10370 1.45738 1.20595 1.32315 1.11634 1.22597 0.85193 0.91678 1.06344 1.19507 0.90670 1.00358 0.95589 1.20272 0.99684 1.02147 0.90802 1.21231 0.92507 0.95738 1.00772 1.21211 1.01522 0.97585 0.94584 1.20455 0.94744 0.99426 0.95428 1.19727 0.98939 1.01294 0.94685 1.22135 0.97431 0.91499 0.88052 0.97227 0.94513 0.91948 0.92711 0.93770 0.90641 0.88931 0.88316 0.89525 0.91213 0.88069 0.86008 0.87753 0.81550 0.81074 0.82966 0.86721 0.90426 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.95 9.91 127.77 1.27 6.22 16 2 N -0.62 -29.84 2.38 -726.92 -1.73 -31.57 16 3 C -0.27 -15.45 9.91 84.03 0.83 -14.62 16 4 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 5 C -0.02 -1.06 5.27 84.86 0.45 -0.61 16 6 N -0.95 -59.73 13.97 21.65 0.30 -59.43 16 7 Si 0.95 45.14 25.18 68.60 1.73 46.87 16 8 H -0.26 -11.37 6.66 99.48 0.66 -10.70 16 9 H -0.31 -15.04 7.11 99.48 0.71 -14.34 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 11 C 0.15 5.91 4.08 86.38 0.35 6.26 16 12 C -0.11 -4.06 3.29 -9.40 -0.03 -4.09 16 13 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.12 -3.28 6.42 31.78 0.20 -3.08 16 15 C 0.12 3.20 5.55 86.72 0.48 3.69 16 16 N -0.61 -20.83 3.33 -815.70 -2.71 -23.54 16 17 C 0.61 22.79 7.84 86.65 0.68 23.47 16 18 O -0.57 -25.01 16.66 -4.04 -0.07 -25.08 16 19 C -0.04 -1.16 7.16 43.86 0.31 -0.84 16 20 N -0.20 -5.20 9.38 -44.89 -0.42 -5.62 16 21 N -0.31 -5.93 3.74 -361.12 -1.35 -7.28 16 22 C 0.08 0.56 11.24 127.77 1.44 2.00 16 23 C 0.05 1.04 6.85 39.19 0.27 1.31 16 24 C -0.11 -1.36 9.94 22.12 0.22 -1.14 16 25 C -0.08 -0.95 9.96 22.07 0.22 -0.73 16 26 C -0.13 -2.19 9.98 22.07 0.22 -1.97 16 27 C -0.08 -2.07 9.87 22.14 0.22 -1.85 16 28 C -0.14 -3.97 6.34 -20.14 -0.13 -4.09 16 29 C 0.13 4.77 5.36 86.85 0.47 5.24 16 30 H 0.01 0.39 7.54 -2.39 -0.02 0.37 16 31 H 0.04 1.51 8.08 -2.38 -0.02 1.49 16 32 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 33 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.04 1.93 3.47 -2.39 -0.01 1.92 16 35 H 0.08 2.55 7.82 -2.39 -0.02 2.53 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.10 2.22 8.04 -2.39 -0.02 2.20 16 38 H 0.09 2.03 7.78 -2.39 -0.02 2.01 16 39 H 0.07 1.89 7.66 -2.39 -0.02 1.87 16 40 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 41 H 0.12 0.15 8.09 -2.39 -0.02 0.14 16 42 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 45 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.11 3.36 7.65 -2.91 -0.02 3.34 16 47 H 0.08 2.60 8.00 -2.39 -0.02 2.58 16 48 H 0.05 2.10 7.51 -2.39 -0.02 2.09 16 Total: -1.00 -82.71 387.08 4.13 -78.58 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.92 Total: 11.89 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 7.47 Total: 15.17 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -5.91 Total: -127.43 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.07 Total: -25.08 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.73 Total: 46.87 kcal Total: -82.71 4.13 -78.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753358118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.063 kcal (2) G-P(sol) polarization free energy of solvation -82.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds