Wall clock time and date at job start Wed Apr 1 2020 04:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 120.00205 * 2 1 4 4 H 1.08001 * 119.99839 * 202.74402 * 3 2 1 5 5 C 1.38807 * 119.99923 * 22.73487 * 3 2 1 6 6 N 1.31618 * 119.99991 * 13.38557 * 5 3 2 7 7 Si 1.86796 * 120.00167 * 193.37898 * 5 3 2 8 8 H 1.48501 * 109.47147 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47295 * 120.00092 * 7 5 3 10 10 H 1.48496 * 109.47636 * 240.00321 * 7 5 3 11 11 C 1.46508 * 119.99933 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46701 * 90.00094 * 11 2 1 13 13 H 1.08999 * 110.88338 * 302.57077 * 12 11 2 14 14 C 1.55157 * 111.03252 * 178.66869 * 12 11 2 15 15 C 1.54313 * 102.86218 * 206.21193 * 14 12 11 16 16 N 1.47024 * 107.27484 * 22.53238 * 15 14 12 17 17 C 1.34775 * 125.64660 * 180.97005 * 16 15 14 18 18 O 1.21618 * 119.99771 * 179.68822 * 17 16 15 19 19 C 1.47380 * 120.00126 * 359.68206 * 17 16 15 20 20 N 1.31573 * 126.82634 * 0.03346 * 19 17 16 21 21 N 1.28384 * 111.96647 * 179.97438 * 20 19 17 22 22 C 1.46500 * 124.36961 * 179.97438 * 21 20 19 23 23 C 1.37044 * 111.25674 * 0.02562 * 21 20 19 24 24 C 1.39128 * 134.72272 * 179.97438 * 23 21 20 25 25 C 1.36681 * 119.78457 * 180.02562 * 24 23 21 26 26 C 1.38904 * 120.89213 * 0.02562 * 25 24 23 27 27 C 1.36713 * 120.52549 * 359.97438 * 26 25 24 28 28 C 1.39192 * 119.50878 * 0.02562 * 27 26 25 29 29 C 1.47424 * 108.70227 * 0.69601 * 16 15 14 30 30 H 1.09003 * 109.47141 * 275.13359 * 1 2 3 31 31 H 1.08998 * 109.47077 * 35.12954 * 1 2 3 32 32 H 1.08999 * 109.47156 * 155.13208 * 1 2 3 33 33 H 0.97009 * 120.00139 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.46501 * 330.00373 * 11 2 1 35 35 H 1.08998 * 109.47106 * 210.00303 * 11 2 1 36 36 H 1.09002 * 110.72369 * 324.77494 * 14 12 11 37 37 H 1.09007 * 110.72123 * 87.87057 * 14 12 11 38 38 H 1.08997 * 109.99004 * 263.05225 * 15 14 12 39 39 H 1.09006 * 109.77255 * 141.88466 * 15 14 12 40 40 H 1.09006 * 109.47214 * 90.02874 * 22 21 20 41 41 H 1.08997 * 109.47285 * 210.02992 * 22 21 20 42 42 H 1.09005 * 109.47235 * 330.02880 * 22 21 20 43 43 H 1.08002 * 120.11193 * 0.05867 * 24 23 21 44 44 H 1.07995 * 119.55732 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.73813 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.24732 * 180.02562 * 27 26 25 47 47 H 1.09000 * 110.36312 * 94.94468 * 29 16 15 48 48 H 1.08999 * 110.36906 * 217.15123 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1668 1.2222 -0.3616 5 6 1.5366 2.3413 0.4646 6 7 0.4112 2.2622 1.1425 7 14 2.3088 4.0086 0.1279 8 1 3.5614 3.8262 -0.6487 9 1 1.3610 4.8447 -0.6517 10 1 2.6177 4.6803 1.4157 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 1.5156 -1.8049 -1.9908 14 6 3.2569 -3.0371 -1.4837 15 6 3.9750 -2.9603 -2.8475 16 7 4.0438 -1.5412 -3.2253 17 6 4.5820 -1.0562 -4.3618 18 8 4.5788 0.1415 -4.5734 19 6 5.1744 -1.9771 -5.3482 20 7 5.2497 -3.2876 -5.2578 21 7 5.8237 -3.8074 -6.2818 22 6 6.0505 -5.2434 -6.4626 23 6 6.1977 -2.8455 -7.1834 24 6 6.8345 -2.8577 -8.4204 25 6 7.0637 -1.6814 -9.0776 26 6 6.6695 -0.4684 -8.5274 27 6 6.0419 -0.4279 -7.3135 28 6 5.7989 -1.6143 -6.6273 29 6 3.4208 -0.7371 -2.1582 30 1 -0.3633 0.0920 1.0236 31 1 -0.3633 0.8405 -0.5913 32 1 -0.3633 -0.9324 -0.4322 33 1 -0.0175 3.0697 1.4669 34 1 1.6083 -2.0282 0.5147 35 1 3.1499 -1.1383 0.5144 36 1 3.9769 -3.0775 -0.6663 37 1 2.5867 -3.8961 -1.4482 38 1 3.4119 -3.5166 -3.5968 39 1 4.9814 -3.3693 -2.7578 40 1 5.1957 -5.6846 -6.9754 41 1 6.9503 -5.3970 -7.0581 42 1 6.1741 -5.7172 -5.4887 43 1 7.1463 -3.7936 -8.8601 44 1 7.5579 -1.6952 -10.0378 45 1 6.8603 0.4499 -9.0628 46 1 5.7370 0.5177 -6.8900 47 1 4.1792 -0.3764 -1.4633 48 1 2.8708 0.1008 -2.5866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753358119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:07 Heat of formation + Delta-G solvation = 93.708296 kcal Electronic energy + Delta-G solvation = -29747.731533 eV Core-core repulsion = 25805.289869 eV Total energy + Delta-G solvation = -3942.441664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.65449 -39.58175 -37.99716 -37.38342 -35.25818 -33.83925 -32.18297 -30.80483 -30.61694 -30.24665 -28.77871 -27.65732 -25.77465 -25.59166 -24.03376 -23.13350 -22.44547 -21.54296 -21.12222 -19.54498 -19.21608 -17.76679 -17.31706 -16.80082 -16.56498 -16.16137 -15.59557 -15.48199 -15.11767 -14.75458 -14.36728 -14.30958 -13.92007 -13.57945 -13.38870 -13.25989 -13.18603 -12.95753 -12.84289 -12.36159 -12.24699 -12.19723 -12.09437 -11.78448 -11.36728 -11.24285 -11.14781 -10.94458 -10.74731 -10.57118 -10.33127 -10.30241 -10.16241 -10.08707 -9.90241 -9.76893 -9.68794 -8.98108 -8.46635 -8.38638 -8.13271 -6.66826 -5.64662 -3.11155 0.65437 1.15338 1.80988 2.10097 3.14459 3.30573 3.45920 3.53796 3.58257 3.66830 3.99863 4.19216 4.47181 4.58362 4.67180 4.71866 4.76674 4.88667 4.93674 4.96975 5.08215 5.17176 5.21521 5.32358 5.45662 5.51523 5.61776 5.71680 5.79369 5.81524 5.99439 6.03473 6.06332 6.21461 6.25864 6.28215 6.32285 6.44903 6.47720 6.57215 6.63282 6.67341 6.76563 6.81778 6.97243 7.44332 7.62216 7.77653 7.79395 7.90091 8.36050 8.47230 9.31539 9.95130 10.43422 11.40006 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.002796 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.566301 B =10010.381003 C =11562.590903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.251 4.251 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.898 3.102 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.162 3.838 12 C -0.117 4.117 13 H 0.075 0.925 14 C -0.130 4.130 15 C 0.112 3.888 16 N -0.605 5.605 17 C 0.611 3.389 18 O -0.529 6.529 19 C 0.013 3.987 20 N -0.207 5.207 21 N -0.323 5.323 22 C 0.095 3.905 23 C 0.064 3.936 24 C -0.123 4.123 25 C -0.084 4.084 26 C -0.144 4.144 27 C -0.039 4.039 28 C -0.110 4.110 29 C 0.125 3.875 30 H 0.030 0.970 31 H 0.040 0.960 32 H -0.004 1.004 33 H 0.251 0.749 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.140 0.860 47 H 0.070 0.930 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.656 -17.843 -18.428 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.325 5.325 3 C -0.381 4.381 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.729 3.271 8 H -0.200 1.200 9 H -0.216 1.216 10 H -0.219 1.219 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.094 0.906 14 C -0.169 4.169 15 C -0.011 4.011 16 N -0.338 5.338 17 C 0.397 3.603 18 O -0.404 6.404 19 C -0.158 4.158 20 N -0.036 5.036 21 N -0.116 5.116 22 C -0.045 4.045 23 C -0.048 4.048 24 C -0.144 4.144 25 C -0.105 4.105 26 C -0.164 4.164 27 C -0.060 4.060 28 C -0.117 4.117 29 C 0.005 3.995 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.015 0.985 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.158 0.842 47 H 0.089 0.911 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.313 -18.086 -17.823 28.220 hybrid contribution 0.533 1.292 -0.736 1.579 sum 12.846 -16.794 -18.558 28.133 Atomic orbital electron populations 1.20784 0.82732 0.95314 0.99391 1.43918 1.01816 1.00667 1.86062 1.19247 0.98138 0.85423 1.35272 0.91153 1.24993 0.97890 0.98472 0.98269 1.70085 1.19571 1.26917 1.38770 0.86261 0.78872 0.84552 0.77454 1.20049 1.21645 1.21851 1.20659 0.96351 0.88620 0.90964 1.23192 0.97180 0.92521 1.01033 0.90648 1.22714 0.99347 0.98937 0.95860 1.22004 1.00559 0.81879 0.96692 1.48501 1.57337 1.09120 1.18852 1.16247 0.78337 0.86121 0.79549 1.90826 1.58562 1.14366 1.76644 1.22809 1.06960 0.89368 0.96650 1.73024 1.10656 1.10670 1.09273 1.45188 1.46131 1.07379 1.12863 1.22061 1.03058 0.74740 1.04674 1.19167 1.02596 0.88557 0.94464 1.19719 1.02852 0.99316 0.92497 1.20727 0.98574 0.91712 0.99489 1.20848 1.01106 0.98246 0.96166 1.20474 0.94882 0.97239 0.93364 1.19456 1.03813 0.93751 0.94701 1.22377 0.95236 0.94537 0.87385 0.95138 0.94147 0.98501 0.93929 0.94020 0.93182 0.90646 0.90523 0.91534 0.91635 0.90134 0.89080 0.88541 0.85712 0.85235 0.85248 0.84229 0.91147 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.98 59.85 0.54 4.56 16 2 N -0.60 -14.96 2.87 -181.11 -0.52 -15.48 16 3 C -0.25 -6.89 8.98 -15.06 -0.14 -7.02 16 4 H 0.07 1.90 6.73 -52.49 -0.35 1.55 16 5 C 0.00 0.05 5.09 -17.43 -0.09 -0.04 16 6 N -0.91 -26.91 10.72 55.49 0.59 -26.32 16 7 Si 0.90 22.67 29.57 -169.99 -5.03 17.64 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 C 0.16 3.20 5.19 -4.04 -0.02 3.18 16 12 C -0.12 -1.99 3.29 -88.47 -0.29 -2.29 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -1.69 6.42 -24.90 -0.16 -1.85 16 15 C 0.11 1.52 5.54 -3.07 -0.02 1.50 16 16 N -0.60 -10.38 3.33 -171.81 -0.57 -10.95 16 17 C 0.61 11.25 7.84 -12.54 -0.10 11.15 16 18 O -0.53 -11.32 16.65 5.26 0.09 -11.24 16 19 C 0.01 0.20 7.16 -80.76 -0.58 -0.38 16 20 N -0.21 -2.77 9.38 34.46 0.32 -2.45 16 21 N -0.32 -3.48 3.74 -65.50 -0.24 -3.72 16 22 C 0.10 0.51 11.24 59.85 0.67 1.18 16 23 C 0.06 0.74 6.85 -84.21 -0.58 0.16 16 24 C -0.12 -1.05 9.94 -39.81 -0.40 -1.45 16 25 C -0.08 -0.68 9.96 -39.90 -0.40 -1.08 16 26 C -0.14 -1.40 9.98 -39.89 -0.40 -1.80 16 27 C -0.04 -0.51 9.87 -39.78 -0.39 -0.90 16 28 C -0.11 -1.58 6.34 -105.05 -0.67 -2.24 16 29 C 0.13 2.38 5.07 -2.53 -0.01 2.37 16 30 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 31 H 0.04 1.08 7.33 -51.93 -0.38 0.70 16 32 H 0.00 -0.08 8.03 -51.93 -0.42 -0.49 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.05 0.99 8.00 -51.93 -0.42 0.57 16 36 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 37 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 38 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 39 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.28 8.09 -51.93 -0.42 -0.14 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 46 H 0.14 1.91 7.65 -52.48 -0.40 1.51 16 47 H 0.07 1.40 7.44 -51.93 -0.39 1.01 16 48 H 0.09 1.94 8.03 -51.93 -0.42 1.52 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -34.64 390.60 -9.80 -44.43 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -7.31 Total: -2.86 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -3.02 Total: 5.05 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.42 Total: -58.92 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.64 -9.80 -44.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753358119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.143 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds