Wall clock time and date at job start Wed Apr 1 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 120.00205 * 2 1 4 4 H 1.08001 * 119.99839 * 202.74402 * 3 2 1 5 5 C 1.38807 * 119.99923 * 22.73487 * 3 2 1 6 6 N 1.31618 * 119.99991 * 13.38557 * 5 3 2 7 7 Si 1.86796 * 120.00167 * 193.37898 * 5 3 2 8 8 H 1.48501 * 109.47147 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47295 * 120.00092 * 7 5 3 10 10 H 1.48496 * 109.47636 * 240.00321 * 7 5 3 11 11 C 1.46508 * 119.99933 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46701 * 90.00094 * 11 2 1 13 13 H 1.08999 * 110.88338 * 302.57077 * 12 11 2 14 14 C 1.55157 * 111.03252 * 178.66869 * 12 11 2 15 15 C 1.54313 * 102.86218 * 206.21193 * 14 12 11 16 16 N 1.47024 * 107.27484 * 22.53238 * 15 14 12 17 17 C 1.34775 * 125.64660 * 180.97005 * 16 15 14 18 18 O 1.21618 * 119.99771 * 179.68822 * 17 16 15 19 19 C 1.47380 * 120.00126 * 359.68206 * 17 16 15 20 20 N 1.31573 * 126.82634 * 0.03346 * 19 17 16 21 21 N 1.28384 * 111.96647 * 179.97438 * 20 19 17 22 22 C 1.46500 * 124.36961 * 179.97438 * 21 20 19 23 23 C 1.37044 * 111.25674 * 0.02562 * 21 20 19 24 24 C 1.39128 * 134.72272 * 179.97438 * 23 21 20 25 25 C 1.36681 * 119.78457 * 180.02562 * 24 23 21 26 26 C 1.38904 * 120.89213 * 0.02562 * 25 24 23 27 27 C 1.36713 * 120.52549 * 359.97438 * 26 25 24 28 28 C 1.39192 * 119.50878 * 0.02562 * 27 26 25 29 29 C 1.47424 * 108.70227 * 0.69601 * 16 15 14 30 30 H 1.09003 * 109.47141 * 275.13359 * 1 2 3 31 31 H 1.08998 * 109.47077 * 35.12954 * 1 2 3 32 32 H 1.08999 * 109.47156 * 155.13208 * 1 2 3 33 33 H 0.97009 * 120.00139 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.46501 * 330.00373 * 11 2 1 35 35 H 1.08998 * 109.47106 * 210.00303 * 11 2 1 36 36 H 1.09002 * 110.72369 * 324.77494 * 14 12 11 37 37 H 1.09007 * 110.72123 * 87.87057 * 14 12 11 38 38 H 1.08997 * 109.99004 * 263.05225 * 15 14 12 39 39 H 1.09006 * 109.77255 * 141.88466 * 15 14 12 40 40 H 1.09006 * 109.47214 * 90.02874 * 22 21 20 41 41 H 1.08997 * 109.47285 * 210.02992 * 22 21 20 42 42 H 1.09005 * 109.47235 * 330.02880 * 22 21 20 43 43 H 1.08002 * 120.11193 * 0.05867 * 24 23 21 44 44 H 1.07995 * 119.55732 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.73813 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.24732 * 180.02562 * 27 26 25 47 47 H 1.09000 * 110.36312 * 94.94468 * 29 16 15 48 48 H 1.08999 * 110.36906 * 217.15123 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1668 1.2222 -0.3616 5 6 1.5366 2.3413 0.4646 6 7 0.4112 2.2622 1.1425 7 14 2.3088 4.0086 0.1279 8 1 3.5614 3.8262 -0.6487 9 1 1.3610 4.8447 -0.6517 10 1 2.6177 4.6803 1.4157 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 1.5156 -1.8049 -1.9908 14 6 3.2569 -3.0371 -1.4837 15 6 3.9750 -2.9603 -2.8475 16 7 4.0438 -1.5412 -3.2253 17 6 4.5820 -1.0562 -4.3618 18 8 4.5788 0.1415 -4.5734 19 6 5.1744 -1.9771 -5.3482 20 7 5.2497 -3.2876 -5.2578 21 7 5.8237 -3.8074 -6.2818 22 6 6.0505 -5.2434 -6.4626 23 6 6.1977 -2.8455 -7.1834 24 6 6.8345 -2.8577 -8.4204 25 6 7.0637 -1.6814 -9.0776 26 6 6.6695 -0.4684 -8.5274 27 6 6.0419 -0.4279 -7.3135 28 6 5.7989 -1.6143 -6.6273 29 6 3.4208 -0.7371 -2.1582 30 1 -0.3633 0.0920 1.0236 31 1 -0.3633 0.8405 -0.5913 32 1 -0.3633 -0.9324 -0.4322 33 1 -0.0175 3.0697 1.4669 34 1 1.6083 -2.0282 0.5147 35 1 3.1499 -1.1383 0.5144 36 1 3.9769 -3.0775 -0.6663 37 1 2.5867 -3.8961 -1.4482 38 1 3.4119 -3.5166 -3.5968 39 1 4.9814 -3.3693 -2.7578 40 1 5.1957 -5.6846 -6.9754 41 1 6.9503 -5.3970 -7.0581 42 1 6.1741 -5.7172 -5.4887 43 1 7.1463 -3.7936 -8.8601 44 1 7.5579 -1.6952 -10.0378 45 1 6.8603 0.4499 -9.0628 46 1 5.7370 0.5177 -6.8900 47 1 4.1792 -0.3764 -1.4633 48 1 2.8708 0.1008 -2.5866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753358119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:05 Heat of formation + Delta-G solvation = 72.173147 kcal Electronic energy + Delta-G solvation = -29748.665367 eV Core-core repulsion = 25805.289869 eV Total energy + Delta-G solvation = -3943.375498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.54034 -40.95160 -38.90631 -38.73934 -37.09392 -34.72514 -33.86069 -32.31652 -31.53982 -31.12502 -30.14448 -28.68423 -27.87119 -26.98721 -25.17063 -24.26656 -23.30758 -22.90933 -22.44839 -21.04431 -20.34260 -18.87341 -18.76249 -18.14990 -17.52553 -17.19590 -16.97079 -16.79731 -16.37883 -16.16502 -15.76544 -15.24350 -15.08747 -15.08511 -14.83675 -14.56572 -14.37663 -14.01150 -13.88249 -13.73406 -13.54183 -13.20329 -13.06550 -12.93423 -12.88031 -12.86890 -12.65987 -12.38203 -12.19619 -12.13828 -12.01552 -11.90137 -11.86470 -11.56270 -11.47682 -11.24362 -11.02156 -10.61957 -9.81223 -9.74622 -8.98887 -8.73858 -7.81818 -5.28649 -0.25602 0.33097 0.81162 1.35508 1.40172 1.43819 1.53738 1.89833 2.13169 2.49641 2.77716 3.06614 3.31019 3.39442 3.47883 3.68345 3.75000 3.93190 4.04219 4.08143 4.13681 4.33435 4.34566 4.39830 4.40598 4.46614 4.49784 4.66288 4.71166 4.73312 4.75423 4.84216 4.89372 4.95893 4.98360 5.00591 5.08311 5.17480 5.23211 5.27851 5.39899 5.44532 5.51130 5.55287 5.66745 5.69517 5.74619 5.96155 6.35057 6.40993 6.68476 7.01084 7.17992 7.90949 8.32625 9.20929 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.002796 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.566301 B =10010.381003 C =11562.590903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.619 5.619 3 C -0.246 4.246 4 H 0.066 0.934 5 C -0.053 4.053 6 N -0.936 5.936 7 Si 0.952 3.048 8 H -0.276 1.276 9 H -0.293 1.293 10 H -0.287 1.287 11 C 0.161 3.839 12 C -0.106 4.106 13 H 0.069 0.931 14 C -0.113 4.113 15 C 0.114 3.886 16 N -0.608 5.608 17 C 0.603 3.397 18 O -0.580 6.580 19 C -0.036 4.036 20 N -0.196 5.196 21 N -0.307 5.307 22 C 0.080 3.920 23 C 0.052 3.948 24 C -0.106 4.106 25 C -0.082 4.082 26 C -0.130 4.130 27 C -0.083 4.083 28 C -0.140 4.140 29 C 0.131 3.869 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.034 0.966 33 H 0.246 0.754 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.169 0.831 44 H 0.173 0.827 45 H 0.151 0.849 46 H 0.110 0.890 47 H 0.055 0.945 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.765 -22.112 -20.923 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.342 5.342 3 C -0.377 4.377 4 H 0.084 0.916 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.782 3.218 8 H -0.201 1.201 9 H -0.220 1.220 10 H -0.213 1.213 11 C 0.035 3.965 12 C -0.127 4.127 13 H 0.088 0.912 14 C -0.151 4.151 15 C -0.008 4.008 16 N -0.340 5.340 17 C 0.392 3.608 18 O -0.459 6.459 19 C -0.203 4.203 20 N -0.028 5.028 21 N -0.102 5.102 22 C -0.058 4.058 23 C -0.060 4.060 24 C -0.127 4.127 25 C -0.103 4.103 26 C -0.149 4.149 27 C -0.103 4.103 28 C -0.148 4.148 29 C 0.009 3.991 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.141 0.859 42 H 0.126 0.874 43 H 0.187 0.813 44 H 0.190 0.810 45 H 0.169 0.831 46 H 0.128 0.872 47 H 0.073 0.927 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.446 -22.418 -20.321 33.529 hybrid contribution -0.015 2.452 -0.131 2.455 sum 14.431 -19.967 -20.452 32.019 Atomic orbital electron populations 1.20536 0.82915 0.95807 0.97665 1.44161 1.02101 1.01814 1.86118 1.19455 0.97964 0.86767 1.33485 0.91581 1.25616 0.98761 1.01225 0.99138 1.70209 1.20766 1.27132 1.40298 0.85417 0.77878 0.81381 0.77165 1.20144 1.22039 1.21344 1.20864 0.96060 0.86929 0.92675 1.22928 0.96941 0.94335 0.98540 0.91237 1.22717 0.99333 0.97284 0.95805 1.22190 1.01691 0.79643 0.97240 1.48571 1.56787 1.10470 1.18156 1.16754 0.77825 0.86140 0.80092 1.90769 1.60611 1.16654 1.77847 1.22315 1.10412 0.90103 0.97463 1.72894 1.10210 1.09475 1.10224 1.45758 1.43714 1.09152 1.11552 1.22616 1.05392 0.71476 1.06323 1.19483 1.03416 0.87467 0.95651 1.20280 1.00368 1.01381 0.90673 1.21228 0.97697 0.90531 1.00804 1.21200 0.98799 1.00412 0.94526 1.20444 0.98213 0.96148 0.95508 1.19734 1.04698 0.95619 0.94710 1.22099 0.94984 0.94372 0.87678 0.97409 0.97325 0.94792 0.94414 0.91518 0.93291 0.89276 0.87122 0.90509 0.90240 0.88252 0.85927 0.87410 0.81318 0.80998 0.83148 0.87179 0.92708 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 8.98 127.77 1.15 10.00 16 2 N -0.62 -31.31 2.87 -726.91 -2.09 -33.39 16 3 C -0.25 -13.96 8.98 84.03 0.75 -13.21 16 4 H 0.07 3.74 6.73 -2.91 -0.02 3.72 16 5 C -0.05 -3.09 5.09 84.86 0.43 -2.66 16 6 N -0.94 -57.38 10.72 21.65 0.23 -57.15 16 7 Si 0.95 48.54 29.57 68.60 2.03 50.57 16 8 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 9 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 10 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 11 C 0.16 6.22 5.19 86.38 0.45 6.66 16 12 C -0.11 -3.54 3.29 -9.40 -0.03 -3.57 16 13 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.11 -2.62 6.42 31.78 0.20 -2.42 16 15 C 0.11 2.93 5.54 86.72 0.48 3.41 16 16 N -0.61 -21.73 3.33 -815.73 -2.71 -24.45 16 17 C 0.60 23.99 7.84 86.65 0.68 24.67 16 18 O -0.58 -27.66 16.65 -4.09 -0.07 -27.73 16 19 C -0.04 -1.18 7.16 43.86 0.31 -0.86 16 20 N -0.20 -5.02 9.38 -44.88 -0.42 -5.44 16 21 N -0.31 -5.79 3.74 -361.13 -1.35 -7.14 16 22 C 0.08 0.49 11.24 127.77 1.44 1.93 16 23 C 0.05 1.08 6.85 39.18 0.27 1.35 16 24 C -0.11 -1.35 9.94 22.12 0.22 -1.13 16 25 C -0.08 -1.00 9.96 22.06 0.22 -0.78 16 26 C -0.13 -2.37 9.98 22.07 0.22 -2.15 16 27 C -0.08 -2.29 9.87 22.14 0.22 -2.07 16 28 C -0.14 -4.16 6.34 -20.14 -0.13 -4.28 16 29 C 0.13 5.25 5.07 86.85 0.44 5.69 16 30 H 0.01 0.42 7.34 -2.39 -0.02 0.40 16 31 H 0.01 0.45 7.33 -2.39 -0.02 0.43 16 32 H 0.03 1.42 8.03 -2.39 -0.02 1.40 16 33 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 34 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 35 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 36 H 0.09 1.89 8.04 -2.39 -0.02 1.87 16 37 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.08 1.84 7.68 -2.39 -0.02 1.82 16 39 H 0.08 1.85 7.77 -2.38 -0.02 1.83 16 40 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.12 0.03 8.09 -2.39 -0.02 0.01 16 42 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 44 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 45 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.11 3.53 7.65 -2.91 -0.02 3.51 16 47 H 0.05 2.33 7.44 -2.39 -0.02 2.31 16 48 H 0.04 2.03 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -83.48 390.60 3.90 -79.58 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 0.96 Total: 4.58 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 7.33 Total: 20.57 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -6.34 Total: -127.57 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.07 Total: -27.73 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -83.48 3.90 -79.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753358119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.756 kcal (2) G-P(sol) polarization free energy of solvation -83.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds