Wall clock time and date at job start Wed Apr 1 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50708 * 109.46968 * 2 1 4 4 C 1.38133 * 120.03518 * 265.00153 * 3 2 1 5 5 C 1.38257 * 120.07091 * 180.02562 * 4 3 2 6 6 C 1.38303 * 120.15084 * 0.02562 * 5 4 3 7 7 C 1.38089 * 120.07082 * 0.02562 * 6 5 4 8 8 C 1.38870 * 120.04026 * 85.01663 * 3 2 1 9 9 N 1.39838 * 120.06990 * 359.96106 * 8 3 2 10 10 C 1.38138 * 119.99852 * 151.14046 * 9 8 3 11 11 N 1.32866 * 120.04664 * 353.53031 * 10 9 8 12 12 C 1.32839 * 119.82686 * 179.76896 * 11 10 9 13 13 N 1.37990 * 120.04443 * 180.22714 * 12 11 10 14 14 N 1.33125 * 119.91049 * 0.51273 * 12 11 10 15 15 C 1.32145 * 120.08667 * 359.74160 * 14 12 11 16 16 C 1.50695 * 119.91252 * 179.97438 * 15 14 12 17 17 N 1.46908 * 109.46876 * 270.01844 * 16 15 14 18 18 C 1.46895 * 111.00266 * 293.95688 * 17 16 15 19 19 C 1.46897 * 110.99657 * 169.99761 * 17 16 15 20 20 C 1.50709 * 109.46932 * 190.00037 * 19 17 16 21 21 H 1.07996 * 119.99719 * 0.02562 * 20 19 17 22 22 C 1.37874 * 120.00129 * 180.02562 * 20 19 17 23 23 N 1.31521 * 119.99669 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00231 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47020 * 59.99705 * 24 22 20 26 26 H 1.48500 * 109.47152 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46963 * 299.99862 * 24 22 20 28 28 N 1.32166 * 120.17552 * 359.97438 * 15 14 12 29 29 H 1.09000 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47569 * 300.00120 * 1 2 3 31 31 H 1.09005 * 109.47376 * 60.00473 * 1 2 3 32 32 H 1.08995 * 109.47569 * 239.99880 * 2 1 3 33 33 H 1.09000 * 109.47124 * 119.99150 * 2 1 3 34 34 H 1.07997 * 119.96431 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.92690 * 180.02562 * 5 4 3 36 36 H 1.07995 * 119.96981 * 179.72781 * 6 5 4 37 37 H 1.08004 * 120.04134 * 180.02562 * 7 6 5 38 38 H 0.97001 * 120.00012 * 331.13897 * 9 8 3 39 39 H 0.97006 * 120.00383 * 180.27831 * 13 12 11 40 40 H 0.97000 * 120.00429 * 0.28428 * 13 12 11 41 41 H 1.08997 * 109.47609 * 30.02030 * 16 15 14 42 42 H 1.09005 * 109.47393 * 150.02597 * 16 15 14 43 43 H 1.08996 * 109.47169 * 59.99405 * 18 17 16 44 44 H 1.08997 * 109.47201 * 180.02562 * 18 17 16 45 45 H 1.09006 * 109.46587 * 299.99913 * 18 17 16 46 46 H 1.08996 * 109.47953 * 310.00299 * 19 17 16 47 47 H 1.09004 * 109.47213 * 70.00902 * 19 17 16 48 48 H 0.97006 * 119.99352 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0380 -1.1913 5 6 2.8224 3.3413 -1.1921 6 6 2.9569 4.0314 -0.0011 7 6 2.6311 3.4199 1.1934 8 6 2.1655 2.1112 1.1976 9 7 1.8332 1.4895 2.4053 10 6 2.4716 1.8619 3.5724 11 7 3.4886 2.7159 3.5310 12 6 4.0965 3.0745 4.6564 13 7 5.1501 3.9648 4.6191 14 7 3.6914 2.5695 5.8196 15 6 2.6828 1.7165 5.8563 16 6 2.2279 1.1469 7.1751 17 7 2.9664 -0.0920 7.4542 18 6 2.6227 -1.1398 6.4837 19 6 2.7269 -0.5491 8.8296 20 6 3.6791 -1.6697 9.1595 21 1 4.3911 -2.0081 8.4214 22 6 3.6411 -2.2629 10.4035 23 7 2.7742 -1.8504 11.3025 24 14 4.8218 -3.6514 10.8127 25 1 6.2194 -3.1651 10.6896 26 1 4.5796 -4.1136 12.2030 27 1 4.6053 -4.7790 9.8709 28 7 2.0720 1.3617 4.7392 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.2574 1.5019 -2.1231 35 1 3.0783 3.8218 -2.1249 36 1 3.3218 5.0478 -0.0047 37 1 2.7360 3.9594 2.1232 38 1 1.1544 0.7969 2.4236 39 1 5.5962 4.2232 5.4409 40 1 5.4448 4.3323 3.7712 41 1 2.4182 1.8699 7.9683 42 1 1.1604 0.9309 7.1289 43 1 2.8751 -0.8013 5.4789 44 1 3.1830 -2.0460 6.7137 45 1 1.5545 -1.3497 6.5388 46 1 2.8864 0.2785 9.5206 47 1 1.7008 -0.9057 8.9205 48 1 2.7473 -2.2681 12.1776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133246607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:53 Heat of formation + Delta-G solvation = 112.661937 kcal Electronic energy + Delta-G solvation = -29249.796422 eV Core-core repulsion = 25340.469401 eV Total energy + Delta-G solvation = -3909.327022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57418 -39.94640 -36.92444 -36.58055 -35.07235 -34.47044 -32.79189 -32.25646 -31.62692 -30.00216 -29.07027 -28.17333 -26.92517 -24.68294 -24.25348 -24.01073 -22.67117 -21.78275 -21.10194 -20.31802 -19.15124 -18.21554 -17.24015 -16.58859 -16.24867 -16.06547 -15.82862 -15.66324 -15.03040 -14.80190 -14.38883 -14.26986 -14.09639 -13.99821 -13.91724 -13.82604 -13.55429 -13.45192 -12.69178 -12.36481 -12.28567 -12.03946 -11.90219 -11.75263 -11.50636 -11.41260 -11.18063 -11.07491 -10.91317 -10.85655 -10.66168 -10.44503 -9.95557 -9.83683 -9.44722 -9.36436 -9.19071 -8.91382 -8.87820 -8.41845 -7.97025 -7.29939 -6.01323 -4.02221 0.92346 1.23115 1.30739 1.66193 2.44903 3.09452 3.35420 3.39057 3.42476 3.61066 3.91727 4.09486 4.44291 4.46146 4.48884 4.59378 4.87228 4.88742 4.93815 5.06435 5.13431 5.19185 5.27224 5.34858 5.35858 5.54575 5.64571 5.66106 5.80808 5.85700 5.94232 5.95519 6.12867 6.17202 6.24891 6.31323 6.37870 6.40560 6.48532 6.55052 6.69618 6.80072 6.93944 7.17021 7.24682 7.31948 7.41209 7.60919 7.78373 8.05282 8.16529 8.51281 8.66140 9.04206 9.61366 11.09550 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002434 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.986861 B =11502.862906 C =12535.962576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.098 4.098 5 C -0.141 4.141 6 C -0.105 4.105 7 C -0.117 4.117 8 C 0.172 3.828 9 N -0.627 5.627 10 C 0.619 3.381 11 N -0.644 5.644 12 C 0.622 3.378 13 N -0.808 5.808 14 N -0.610 5.610 15 C 0.456 3.544 16 C 0.117 3.883 17 N -0.530 5.530 18 C 0.040 3.960 19 C 0.196 3.804 20 C -0.506 4.506 21 H 0.062 0.938 22 C 0.056 3.944 23 N -0.898 5.898 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.278 1.278 28 N -0.623 5.623 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.425 0.575 39 H 0.419 0.581 40 H 0.413 0.587 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.017 0.983 46 H 0.034 0.966 47 H -0.004 1.004 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 12.006 -24.930 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.160 4.160 6 C -0.124 4.124 7 C -0.138 4.138 8 C 0.076 3.924 9 N -0.257 5.257 10 C 0.254 3.746 11 N -0.384 5.384 12 C 0.255 3.745 13 N -0.357 5.357 14 N -0.342 5.342 15 C 0.179 3.821 16 C -0.013 4.013 17 N -0.256 5.256 18 C -0.109 4.109 19 C 0.071 3.929 20 C -0.545 4.545 21 H 0.080 0.920 22 C -0.145 4.145 23 N -0.538 5.538 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 N -0.356 5.356 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.265 0.735 39 H 0.251 0.749 40 H 0.244 0.756 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.052 0.948 47 H 0.013 0.987 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.556 12.118 -24.774 27.623 hybrid contribution -0.083 -0.931 0.290 0.978 sum -1.639 11.188 -24.483 26.968 Atomic orbital electron populations 1.21784 0.94628 1.02054 1.02174 1.20501 0.96147 0.92543 1.03282 1.19594 1.04032 0.96190 0.91964 1.20769 0.99228 0.95057 0.96624 1.21055 1.01898 0.95026 0.98050 1.20983 0.99751 0.99760 0.91936 1.21275 1.00267 0.92937 0.99293 1.17474 0.99449 0.91777 0.83712 1.41490 1.40995 1.41179 1.02070 1.18920 0.84426 0.85105 0.86149 1.68102 1.15210 1.24609 1.30502 1.19182 0.85888 0.85210 0.84235 1.41648 1.33461 1.47152 1.13455 1.68519 1.19582 1.18923 1.27215 1.23204 0.82466 0.83115 0.93359 1.20879 0.96275 0.95088 0.89064 1.62111 1.54963 1.02015 1.06465 1.22232 0.98282 0.95873 0.94475 1.19768 0.95620 0.95945 0.81547 1.21082 1.18161 1.16668 0.98571 0.91953 1.24967 0.95916 0.97436 0.96220 1.69950 1.35905 1.42291 1.05633 0.86548 0.81416 0.82166 0.77200 1.20183 1.21347 1.20317 1.68484 1.36131 1.33231 0.97772 0.92005 0.92814 0.92291 0.90565 0.91076 0.85962 0.86286 0.86075 0.84131 0.73534 0.74903 0.75566 0.88208 0.92480 0.93810 0.90813 0.96429 0.94792 0.98668 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.69 16 2 C -0.09 -0.71 5.45 -27.88 -0.15 -0.86 16 3 C -0.11 -1.11 5.15 -104.42 -0.54 -1.65 16 4 C -0.10 -0.84 9.68 -39.61 -0.38 -1.22 16 5 C -0.14 -1.17 10.04 -39.55 -0.40 -1.57 16 6 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 7 C -0.12 -1.31 8.60 -39.39 -0.34 -1.65 16 8 C 0.17 1.97 6.35 -83.72 -0.53 1.44 16 9 N -0.63 -7.77 5.04 -11.51 -0.06 -7.83 16 10 C 0.62 9.43 8.23 -321.93 -2.65 6.79 16 11 N -0.64 -9.42 7.02 -14.72 -0.10 -9.52 16 12 C 0.62 9.19 8.76 -322.14 -2.82 6.36 16 13 N -0.81 -8.12 9.05 29.85 0.27 -7.85 16 14 N -0.61 -10.57 10.46 -11.52 -0.12 -10.69 16 15 C 0.46 8.24 6.44 -156.58 -1.01 7.23 16 16 C 0.12 2.23 5.45 -4.97 -0.03 2.21 16 17 N -0.53 -11.86 4.74 -245.82 -1.17 -13.03 16 18 C 0.04 0.83 9.11 60.06 0.55 1.38 16 19 C 0.20 5.10 4.72 -4.97 -0.02 5.07 16 20 C -0.51 -14.29 8.46 -34.44 -0.29 -14.58 16 21 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 24 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 N -0.62 -10.52 9.42 -11.48 -0.11 -10.63 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.40 7.37 -51.93 -0.38 0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 33 H 0.07 0.64 7.33 -51.93 -0.38 0.26 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.14 1.72 5.94 -52.48 -0.31 1.41 16 38 H 0.42 4.70 6.97 -40.82 -0.28 4.41 16 39 H 0.42 3.63 8.95 -40.82 -0.37 3.26 16 40 H 0.41 3.13 8.95 -40.82 -0.37 2.76 16 41 H 0.10 1.85 7.93 -51.93 -0.41 1.44 16 42 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 43 H 0.04 0.86 6.57 -51.93 -0.34 0.52 16 44 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.03 0.93 7.93 -51.93 -0.41 0.52 16 47 H 0.00 -0.12 8.12 -51.93 -0.42 -0.54 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -32.51 394.65 -15.28 -47.79 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.91 Total: 6.49 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: -8.74 Total: 8.39 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -0.55 Total: -85.38 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.51 -15.28 -47.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133246607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.455 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds