Wall clock time and date at job start Wed Apr 1 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50708 * 109.46968 * 2 1 4 4 C 1.38133 * 120.03518 * 265.00153 * 3 2 1 5 5 C 1.38257 * 120.07091 * 180.02562 * 4 3 2 6 6 C 1.38303 * 120.15084 * 0.02562 * 5 4 3 7 7 C 1.38089 * 120.07082 * 0.02562 * 6 5 4 8 8 C 1.38870 * 120.04026 * 85.01663 * 3 2 1 9 9 N 1.39838 * 120.06990 * 359.96106 * 8 3 2 10 10 C 1.38138 * 119.99852 * 151.14046 * 9 8 3 11 11 N 1.32866 * 120.04664 * 353.53031 * 10 9 8 12 12 C 1.32839 * 119.82686 * 179.76896 * 11 10 9 13 13 N 1.37990 * 120.04443 * 180.22714 * 12 11 10 14 14 N 1.33125 * 119.91049 * 0.51273 * 12 11 10 15 15 C 1.32145 * 120.08667 * 359.74160 * 14 12 11 16 16 C 1.50695 * 119.91252 * 179.97438 * 15 14 12 17 17 N 1.46908 * 109.46876 * 270.01844 * 16 15 14 18 18 C 1.46895 * 111.00266 * 293.95688 * 17 16 15 19 19 C 1.46897 * 110.99657 * 169.99761 * 17 16 15 20 20 C 1.50709 * 109.46932 * 190.00037 * 19 17 16 21 21 H 1.07996 * 119.99719 * 0.02562 * 20 19 17 22 22 C 1.37874 * 120.00129 * 180.02562 * 20 19 17 23 23 N 1.31521 * 119.99669 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00231 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47020 * 59.99705 * 24 22 20 26 26 H 1.48500 * 109.47152 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46963 * 299.99862 * 24 22 20 28 28 N 1.32166 * 120.17552 * 359.97438 * 15 14 12 29 29 H 1.09000 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47569 * 300.00120 * 1 2 3 31 31 H 1.09005 * 109.47376 * 60.00473 * 1 2 3 32 32 H 1.08995 * 109.47569 * 239.99880 * 2 1 3 33 33 H 1.09000 * 109.47124 * 119.99150 * 2 1 3 34 34 H 1.07997 * 119.96431 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.92690 * 180.02562 * 5 4 3 36 36 H 1.07995 * 119.96981 * 179.72781 * 6 5 4 37 37 H 1.08004 * 120.04134 * 180.02562 * 7 6 5 38 38 H 0.97001 * 120.00012 * 331.13897 * 9 8 3 39 39 H 0.97006 * 120.00383 * 180.27831 * 13 12 11 40 40 H 0.97000 * 120.00429 * 0.28428 * 13 12 11 41 41 H 1.08997 * 109.47609 * 30.02030 * 16 15 14 42 42 H 1.09005 * 109.47393 * 150.02597 * 16 15 14 43 43 H 1.08996 * 109.47169 * 59.99405 * 18 17 16 44 44 H 1.08997 * 109.47201 * 180.02562 * 18 17 16 45 45 H 1.09006 * 109.46587 * 299.99913 * 18 17 16 46 46 H 1.08996 * 109.47953 * 310.00299 * 19 17 16 47 47 H 1.09004 * 109.47213 * 70.00902 * 19 17 16 48 48 H 0.97006 * 119.99352 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0380 -1.1913 5 6 2.8224 3.3413 -1.1921 6 6 2.9569 4.0314 -0.0011 7 6 2.6311 3.4199 1.1934 8 6 2.1655 2.1112 1.1976 9 7 1.8332 1.4895 2.4053 10 6 2.4716 1.8619 3.5724 11 7 3.4886 2.7159 3.5310 12 6 4.0965 3.0745 4.6564 13 7 5.1501 3.9648 4.6191 14 7 3.6914 2.5695 5.8196 15 6 2.6828 1.7165 5.8563 16 6 2.2279 1.1469 7.1751 17 7 2.9664 -0.0920 7.4542 18 6 2.6227 -1.1398 6.4837 19 6 2.7269 -0.5491 8.8296 20 6 3.6791 -1.6697 9.1595 21 1 4.3911 -2.0081 8.4214 22 6 3.6411 -2.2629 10.4035 23 7 2.7742 -1.8504 11.3025 24 14 4.8218 -3.6514 10.8127 25 1 6.2194 -3.1651 10.6896 26 1 4.5796 -4.1136 12.2030 27 1 4.6053 -4.7790 9.8709 28 7 2.0720 1.3617 4.7392 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.2574 1.5019 -2.1231 35 1 3.0783 3.8218 -2.1249 36 1 3.3218 5.0478 -0.0047 37 1 2.7360 3.9594 2.1232 38 1 1.1544 0.7969 2.4236 39 1 5.5962 4.2232 5.4409 40 1 5.4448 4.3323 3.7712 41 1 2.4182 1.8699 7.9683 42 1 1.1604 0.9309 7.1289 43 1 2.8751 -0.8013 5.4789 44 1 3.1830 -2.0460 6.7137 45 1 1.5545 -1.3497 6.5388 46 1 2.8864 0.2785 9.5206 47 1 1.7008 -0.9057 8.9205 48 1 2.7473 -2.2681 12.1776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133246607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:52 Heat of formation + Delta-G solvation = 96.171241 kcal Electronic energy + Delta-G solvation = -29250.511513 eV Core-core repulsion = 25340.469401 eV Total energy + Delta-G solvation = -3910.042112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.72969 -40.75548 -38.54966 -37.55915 -36.30595 -35.19608 -34.62258 -33.59058 -32.72313 -30.75802 -30.07697 -29.65919 -28.75444 -26.38928 -25.24889 -24.80426 -24.01031 -22.89532 -22.04419 -21.82845 -20.22085 -19.28673 -18.48862 -18.08156 -17.47387 -17.25414 -16.78238 -16.69033 -16.51445 -16.00707 -15.75831 -15.63133 -15.51070 -15.24208 -15.00503 -14.63425 -14.49252 -14.24192 -14.07779 -13.73415 -13.55166 -13.39145 -13.05383 -13.00684 -12.73057 -12.67866 -12.62660 -12.42069 -12.34599 -12.20114 -11.92936 -11.81409 -11.73409 -11.36635 -10.85580 -10.69142 -10.59090 -10.46341 -9.93998 -9.61233 -9.12500 -8.83772 -8.18650 -6.27972 -0.14056 0.13070 0.51264 0.72388 1.42397 1.44298 1.45521 1.53430 2.07630 2.40934 2.63141 2.78685 2.96543 3.14146 3.32899 3.50284 3.78499 3.82940 3.93371 4.20136 4.32563 4.33718 4.38453 4.46518 4.47985 4.57121 4.62531 4.66797 4.70163 4.77331 4.97457 5.03009 5.06951 5.08579 5.17651 5.18546 5.25524 5.32072 5.36198 5.38404 5.55335 5.60889 5.64145 5.70299 5.82902 6.01778 6.13134 6.17384 6.22477 6.37278 6.51320 6.70136 6.85300 7.40563 7.50223 8.92201 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002434 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.986861 B =11502.862906 C =12535.962576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.117 4.117 4 C -0.101 4.101 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.144 3.856 9 N -0.617 5.617 10 C 0.609 3.391 11 N -0.638 5.638 12 C 0.611 3.389 13 N -0.782 5.782 14 N -0.631 5.631 15 C 0.445 3.555 16 C 0.122 3.878 17 N -0.539 5.539 18 C 0.052 3.948 19 C 0.212 3.788 20 C -0.524 4.524 21 H 0.059 0.941 22 C 0.005 3.995 23 N -0.931 5.931 24 Si 0.968 3.032 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.269 1.269 28 N -0.636 5.636 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.428 0.572 39 H 0.427 0.573 40 H 0.427 0.573 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.021 0.979 46 H 0.013 0.987 47 H -0.026 1.026 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 12.100 -27.642 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.155 4.155 6 C -0.128 4.128 7 C -0.153 4.153 8 C 0.049 3.951 9 N -0.247 5.247 10 C 0.244 3.756 11 N -0.378 5.378 12 C 0.243 3.757 13 N -0.333 5.333 14 N -0.366 5.366 15 C 0.167 3.833 16 C -0.008 4.008 17 N -0.264 5.264 18 C -0.096 4.096 19 C 0.086 3.914 20 C -0.563 4.563 21 H 0.077 0.923 22 C -0.193 4.193 23 N -0.571 5.571 24 Si 0.792 3.208 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.194 1.194 28 N -0.370 5.370 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.269 0.731 39 H 0.261 0.739 40 H 0.261 0.739 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.032 0.968 47 H -0.009 1.009 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.570 12.254 -27.561 30.168 hybrid contribution -0.388 -0.833 0.951 1.323 sum -0.958 11.421 -26.609 28.973 Atomic orbital electron populations 1.21760 0.93906 1.02599 1.02044 1.20522 0.96724 0.91698 1.03383 1.19828 1.03585 0.96827 0.91746 1.21130 0.98347 0.95392 0.97066 1.21428 1.00363 0.94895 0.98781 1.21241 0.99311 1.00723 0.91521 1.21273 1.01312 0.93064 0.99628 1.17731 1.01311 0.92356 0.83721 1.41522 1.40512 1.40935 1.01720 1.19208 0.84756 0.85164 0.86441 1.68268 1.15086 1.24503 1.29955 1.19529 0.86696 0.85726 0.83740 1.41623 1.31653 1.45317 1.14738 1.68451 1.19903 1.19589 1.28619 1.22795 0.83368 0.84053 0.93129 1.20774 0.96274 0.93540 0.90178 1.61961 1.56147 1.03393 1.04928 1.22098 0.98182 0.94874 0.94481 1.19414 0.93940 0.94680 0.83366 1.21361 1.18524 1.17490 0.98896 0.92314 1.25844 0.97553 0.99942 0.95977 1.70068 1.37366 1.43577 1.06057 0.85467 0.79087 0.78996 0.77239 1.19586 1.20622 1.19358 1.68415 1.36512 1.34006 0.98072 0.91143 0.93738 0.91596 0.89038 0.92362 0.83484 0.83548 0.84153 0.85649 0.73129 0.73914 0.73925 0.88349 0.91914 0.92650 0.92282 0.96060 0.96844 1.00860 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.81 71.98 0.71 -1.15 16 2 C -0.09 -1.26 5.45 29.85 0.16 -1.10 16 3 C -0.12 -2.07 5.15 -19.74 -0.10 -2.17 16 4 C -0.10 -1.43 9.68 22.25 0.22 -1.22 16 5 C -0.14 -1.83 10.04 22.29 0.22 -1.60 16 6 C -0.11 -1.77 10.04 22.25 0.22 -1.54 16 7 C -0.13 -2.84 8.60 22.40 0.19 -2.65 16 8 C 0.14 3.20 6.35 38.18 0.24 3.44 16 9 N -0.62 -15.29 5.04 -190.32 -0.96 -16.25 16 10 C 0.61 18.68 8.23 261.18 2.15 20.83 16 11 N -0.64 -18.51 7.02 -200.48 -1.41 -19.92 16 12 C 0.61 17.83 8.76 261.25 2.29 20.12 16 13 N -0.78 -14.85 9.05 -59.47 -0.54 -15.39 16 14 N -0.63 -22.09 10.46 -190.36 -1.99 -24.08 16 15 C 0.45 16.39 6.44 138.53 0.89 17.28 16 16 C 0.12 4.81 5.45 85.55 0.47 5.27 16 17 N -0.54 -24.78 4.74 -931.64 -4.42 -29.20 16 18 C 0.05 2.21 9.11 127.69 1.16 3.37 16 19 C 0.21 11.42 4.72 85.56 0.40 11.82 16 20 C -0.52 -30.16 8.46 25.60 0.22 -29.95 16 21 H 0.06 3.36 7.12 -2.91 -0.02 3.33 16 22 C 0.01 0.30 5.46 84.65 0.46 0.76 16 23 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 24 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 N -0.64 -21.80 9.42 -190.24 -1.79 -23.59 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.64 7.37 -2.39 -0.02 0.62 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 33 H 0.06 1.01 7.33 -2.39 -0.02 0.99 16 34 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.13 3.05 5.94 -2.91 -0.02 3.03 16 38 H 0.43 9.57 6.97 -92.71 -0.65 8.93 16 39 H 0.43 6.88 8.95 -92.70 -0.83 6.05 16 40 H 0.43 5.78 8.95 -92.71 -0.83 4.95 16 41 H 0.10 3.82 7.93 -2.39 -0.02 3.80 16 42 H 0.06 2.36 8.12 -2.38 -0.02 2.35 16 43 H 0.05 2.20 6.57 -2.39 -0.02 2.19 16 44 H 0.06 2.64 6.76 -2.39 -0.02 2.63 16 45 H 0.02 0.86 8.14 -2.38 -0.02 0.85 16 46 H 0.01 0.77 7.93 -2.39 -0.02 0.75 16 47 H -0.03 -1.51 8.12 -2.39 -0.02 -1.53 16 48 H 0.27 14.99 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -70.49 394.65 -0.17 -70.66 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -1.29 Total: 25.09 kcal Atomic # 6 Polarization: 31.61 SS G_CDS: 9.91 Total: 41.52 kcal Atomic # 7 Polarization: -173.19 SS G_CDS: -10.82 Total: -184.01 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.49 -0.17 -70.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133246607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.835 kcal (2) G-P(sol) polarization free energy of solvation -70.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds