Wall clock time and date at job start Wed Apr 1 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46908 * 110.99394 * 2 1 4 4 C 1.50703 * 109.46996 * 288.43323 * 3 2 1 5 5 C 1.35066 * 126.07038 * 105.18669 * 4 3 2 6 6 N 1.35048 * 107.98426 * 180.25421 * 5 4 3 7 7 C 1.46502 * 125.93184 * 179.74340 * 6 5 4 8 8 C 1.50701 * 109.47373 * 124.99951 * 7 6 5 9 9 H 1.07995 * 119.99854 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99778 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00176 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99927 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47252 * 59.99667 * 12 10 8 14 14 H 1.48502 * 109.47185 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47450 * 299.99719 * 12 10 8 16 16 N 1.40080 * 108.14292 * 359.75828 * 6 5 4 17 17 C 1.31649 * 108.09919 * 0.02562 * 16 6 5 18 18 C 1.48366 * 126.04036 * 179.97438 * 17 16 6 19 19 C 1.39772 * 120.90251 * 317.41434 * 18 17 16 20 20 C 1.37960 * 119.02224 * 180.02562 * 19 18 17 21 21 N 1.31938 * 120.87926 * 359.97438 * 20 19 18 22 22 C 1.31936 * 122.00417 * 0.02562 * 21 20 19 23 23 C 1.37958 * 120.88063 * 359.97438 * 22 21 20 24 24 C 1.46896 * 111.00102 * 123.95062 * 2 1 3 25 25 C 1.53780 * 113.61154 * 153.54221 * 24 2 1 26 26 C 1.53783 * 87.08145 * 220.02030 * 25 24 2 27 27 O 1.42900 * 113.61665 * 270.88699 * 26 25 24 28 28 C 1.53779 * 87.08010 * 25.43446 * 26 25 24 29 29 H 1.08997 * 109.47242 * 55.00322 * 1 2 3 30 30 H 1.09002 * 109.46788 * 174.99865 * 1 2 3 31 31 H 1.08997 * 109.46977 * 294.99741 * 1 2 3 32 32 H 1.08999 * 109.46584 * 168.43891 * 3 2 1 33 33 H 1.08993 * 109.47239 * 48.43532 * 3 2 1 34 34 H 1.07998 * 126.01116 * 359.97438 * 5 4 3 35 35 H 1.09005 * 109.46958 * 244.99625 * 7 6 5 36 36 H 1.09003 * 109.46984 * 4.99211 * 7 6 5 37 37 H 0.96999 * 119.99944 * 180.02562 * 11 10 8 38 38 H 1.07999 * 120.49122 * 0.02562 * 19 18 17 39 39 H 1.07997 * 119.56332 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.55875 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.49066 * 180.02562 * 23 22 21 42 42 H 1.08994 * 112.85373 * 284.85493 * 24 2 1 43 43 H 1.09000 * 113.62056 * 334.57613 * 25 24 2 44 44 H 1.09007 * 113.60878 * 105.47662 * 25 24 2 45 45 H 1.08999 * 113.60836 * 139.98378 * 26 25 24 46 46 H 0.96701 * 113.99742 * 277.49723 * 27 26 25 47 47 H 1.09000 * 113.61767 * 220.01420 * 28 26 25 48 48 H 1.09001 * 113.61046 * 89.10978 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.7559 2.0015 -1.3480 5 6 0.8211 2.9329 -1.6357 6 7 0.9238 3.2354 -2.9478 7 6 0.0932 4.1979 -3.6758 8 6 0.9774 5.2114 -4.3556 9 1 2.0506 5.1455 -4.2550 10 6 0.4161 6.2235 -5.1050 11 7 -0.8909 6.3041 -5.2270 12 14 1.5120 7.4802 -5.9469 13 1 2.4174 6.7884 -6.8993 14 1 0.6700 8.4558 -6.6849 15 1 2.3198 8.1953 -4.9265 16 7 1.9622 2.4687 -3.4922 17 6 2.4688 1.7252 -2.5311 18 6 3.5890 0.7625 -2.6706 19 6 3.6672 -0.0930 -3.7732 20 6 4.7255 -0.9734 -3.8635 21 7 5.6548 -1.0134 -2.9278 22 6 5.6182 -0.2235 -1.8717 23 6 4.5949 0.6863 -1.7031 24 6 1.9955 -0.7659 1.1376 25 6 3.3939 -1.3553 0.8890 26 6 2.9044 -2.6190 1.6158 27 8 3.1157 -2.5849 3.0287 28 6 1.4816 -2.2141 1.1958 29 1 -0.3633 0.5894 -0.8418 30 1 -0.3633 -1.0238 -0.0896 31 1 -0.3633 0.4343 0.9314 32 1 3.0655 1.3500 0.2060 33 1 1.4890 1.9550 0.7688 34 1 0.1127 3.3576 -0.9399 35 1 -0.4998 3.6728 -4.4247 36 1 -0.5714 4.7059 -2.9770 37 1 -1.2858 7.0159 -5.7545 38 1 2.9103 -0.0653 -4.5431 39 1 4.7944 -1.6386 -4.7115 40 1 6.3997 -0.2899 -1.1293 41 1 4.5714 1.3303 -0.8364 42 1 1.9068 -0.2328 2.0841 43 1 3.6185 -1.5172 -0.1653 44 1 4.1896 -0.8289 1.4163 45 1 3.2476 -3.5466 1.1578 46 1 4.0088 -2.8385 3.2990 47 1 0.7334 -2.3812 1.9706 48 1 1.1833 -2.6109 0.2254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571601721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:47 Heat of formation + Delta-G solvation = 93.399875 kcal Electronic energy + Delta-G solvation = -29989.359377 eV Core-core repulsion = 26046.904338 eV Total energy + Delta-G solvation = -3942.455038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.82308 -39.72627 -39.54667 -36.58662 -34.34431 -33.71765 -32.89493 -31.17231 -30.90404 -30.04493 -27.82832 -26.81525 -25.37185 -24.93070 -24.21488 -23.22270 -22.49103 -21.68864 -20.09236 -19.63632 -19.36743 -17.38608 -16.75651 -16.60546 -16.16480 -15.85640 -15.66863 -15.56955 -15.28836 -14.89134 -14.45597 -14.22960 -14.02396 -13.67296 -13.62499 -13.52413 -13.15697 -12.87036 -12.70292 -12.45012 -12.31244 -12.24523 -12.10119 -11.78168 -11.66885 -11.45769 -11.15014 -11.02636 -10.97013 -10.86875 -10.38358 -10.32339 -10.10357 -10.01530 -9.88850 -9.44842 -9.34301 -8.97472 -8.70578 -8.45044 -8.23383 -7.70287 -6.31756 -4.37396 1.27869 1.33588 2.61839 3.15065 3.21491 3.25101 3.28552 3.40010 3.82313 4.06202 4.17133 4.25847 4.36690 4.57616 4.59576 4.64226 4.77641 4.97019 5.00435 5.04365 5.17362 5.21838 5.28425 5.35211 5.38461 5.50879 5.58801 5.59026 5.64260 5.67976 5.72309 5.80271 5.88203 5.92412 5.99365 6.05196 6.10388 6.16022 6.20142 6.43871 6.52363 6.83072 6.85156 6.93709 7.14309 7.15147 7.26083 7.37496 7.60934 7.77610 7.87253 8.10923 8.42948 8.70574 9.28953 10.77131 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.003065 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.565597 B = 9134.561384 C =10571.536325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.523 5.523 3 C 0.139 3.861 4 C -0.233 4.233 5 C 0.053 3.947 6 N -0.317 5.317 7 C 0.257 3.743 8 C -0.532 4.532 9 H 0.069 0.931 10 C 0.064 3.936 11 N -0.894 5.894 12 Si 0.908 3.092 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.275 1.275 16 N -0.259 5.259 17 C 0.082 3.918 18 C 0.073 3.927 19 C -0.150 4.150 20 C 0.095 3.905 21 N -0.494 5.494 22 C 0.093 3.907 23 C -0.151 4.151 24 C 0.062 3.938 25 C -0.152 4.152 26 C 0.075 3.925 27 O -0.554 6.554 28 C -0.122 4.122 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.164 0.836 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.269 0.731 38 H 0.134 0.866 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.132 0.868 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.379 0.621 47 H 0.071 0.929 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -16.122 13.427 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.247 5.247 3 C 0.011 3.989 4 C -0.246 4.246 5 C -0.097 4.097 6 N -0.097 5.097 7 C 0.139 3.861 8 C -0.570 4.570 9 H 0.087 0.913 10 C -0.139 4.139 11 N -0.532 5.532 12 Si 0.735 3.265 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.200 1.200 16 N -0.083 5.083 17 C -0.081 4.081 18 C 0.063 3.937 19 C -0.171 4.171 20 C -0.061 4.061 21 N -0.203 5.203 22 C -0.064 4.064 23 C -0.172 4.172 24 C -0.046 4.046 25 C -0.190 4.190 26 C 0.016 3.984 27 O -0.360 6.360 28 C -0.160 4.160 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.181 0.819 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.152 0.848 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.149 0.851 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.227 0.773 47 H 0.090 0.910 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.782 -16.164 11.474 20.950 hybrid contribution -0.253 1.604 1.127 1.976 sum 6.530 -14.560 12.601 20.332 Atomic orbital electron populations 1.22296 0.87609 1.01753 1.00375 1.62239 1.07673 1.13911 1.40878 1.20230 0.99515 0.86945 0.92228 1.19514 1.03501 1.05678 0.95871 1.22230 1.00682 0.98938 0.87842 1.49405 1.24198 1.29965 1.06174 1.19780 0.88894 0.84996 0.92385 1.21185 0.93812 1.10338 1.31673 0.91324 1.24931 0.95310 0.97766 0.95902 1.69902 1.09682 1.33441 1.40216 0.86382 0.80125 0.80386 0.79625 1.19826 1.20969 1.19994 1.77683 1.01940 1.07551 1.21161 1.20221 0.97482 0.98343 0.92051 1.18057 0.90839 0.91745 0.93072 1.22224 1.00037 0.96392 0.98453 1.22565 0.89927 0.96711 0.96946 1.67585 1.26899 1.23486 1.02371 1.22498 0.96837 0.91858 0.95159 1.22062 0.94834 1.00414 0.99910 1.23030 0.95979 0.93190 0.92423 1.23669 0.96590 0.96938 1.01847 1.22628 0.97833 0.96857 0.81115 1.86455 1.36221 1.91745 1.21535 1.23112 0.95509 0.95601 1.01758 0.91073 0.91887 0.96120 0.90676 0.94643 0.81908 0.93538 0.92678 0.92177 0.84775 0.83052 0.83231 0.85067 0.91675 0.88421 0.91352 0.91360 0.77337 0.91036 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.15 60.07 0.55 0.88 16 2 N -0.52 -6.32 4.67 -235.35 -1.10 -7.42 16 3 C 0.14 1.80 4.95 -4.97 -0.02 1.78 16 4 C -0.23 -3.81 4.80 -104.76 -0.50 -4.31 16 5 C 0.05 0.94 10.89 -17.26 -0.19 0.76 16 6 N -0.32 -6.90 3.67 -62.58 -0.23 -7.13 16 7 C 0.26 6.27 6.26 -5.19 -0.03 6.24 16 8 C -0.53 -14.45 9.23 -34.44 -0.32 -14.77 16 9 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -24.86 13.29 55.43 0.74 -24.13 16 12 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 N -0.26 -5.68 12.44 33.42 0.42 -5.27 16 17 C 0.08 1.50 6.72 -82.78 -0.56 0.94 16 18 C 0.07 1.14 5.77 -104.58 -0.60 0.54 16 19 C -0.15 -2.21 9.89 -39.11 -0.39 -2.59 16 20 C 0.09 1.23 11.17 -17.61 -0.20 1.03 16 21 N -0.49 -6.57 10.35 -13.35 -0.14 -6.71 16 22 C 0.09 1.11 11.17 -17.61 -0.20 0.91 16 23 C -0.15 -1.96 8.83 -39.11 -0.35 -2.31 16 24 C 0.06 0.65 3.10 -66.90 -0.21 0.44 16 25 C -0.15 -1.42 7.46 -25.92 -0.19 -1.61 16 26 C 0.08 0.65 5.28 -25.92 -0.14 0.51 16 27 O -0.55 -4.78 13.59 -35.23 -0.48 -5.26 16 28 C -0.12 -1.16 6.45 -25.92 -0.17 -1.33 16 29 H 0.07 0.95 7.01 -51.93 -0.36 0.59 16 30 H 0.06 0.68 7.09 -51.93 -0.37 0.31 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.92 5.48 -51.93 -0.28 0.63 16 33 H 0.04 0.44 8.04 -51.93 -0.42 0.02 16 34 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.32 8.07 -51.93 -0.42 0.91 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.13 1.55 6.30 -52.49 -0.33 1.22 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.05 7.96 -51.93 -0.41 0.64 16 44 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.38 1.63 9.12 45.56 0.42 2.05 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.96 7.89 -51.93 -0.41 0.55 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -31.04 399.60 -9.76 -40.80 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.36 Total: 4.25 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.60 Total: -11.26 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.31 Total: -50.65 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.48 Total: -5.26 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.04 -9.76 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571601721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.197 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds