Wall clock time and date at job start Wed Apr 1 2020 03:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99916 * 2 1 4 4 C 1.53005 * 109.47239 * 184.71572 * 3 2 1 5 5 N 1.46908 * 109.46712 * 69.63540 * 4 3 2 6 6 C 1.46900 * 110.99786 * 286.08208 * 5 4 3 7 7 C 1.50691 * 109.47525 * 302.80101 * 6 5 4 8 8 H 1.08004 * 120.00143 * 4.51760 * 7 6 5 9 9 C 1.37883 * 120.00293 * 184.51530 * 7 6 5 10 10 N 1.31510 * 119.99888 * 354.85060 * 9 7 6 11 11 Si 1.86802 * 120.00135 * 174.84866 * 9 7 6 12 12 H 1.48494 * 109.47102 * 94.99355 * 11 9 7 13 13 H 1.48502 * 109.46956 * 214.99883 * 11 9 7 14 14 H 1.48504 * 109.46880 * 334.99267 * 11 9 7 15 15 C 1.46897 * 110.99948 * 162.13128 * 5 4 3 16 16 C 1.50696 * 109.47316 * 190.00113 * 15 5 4 17 17 O 1.21286 * 120.00068 * 359.97438 * 16 15 5 18 18 N 1.34774 * 120.00344 * 180.02562 * 16 15 5 19 19 C 1.46496 * 120.00229 * 180.02562 * 18 16 15 20 20 C 1.50695 * 109.47483 * 59.99291 * 19 18 16 21 21 O 1.20825 * 120.00288 * 145.00348 * 20 19 18 22 22 O 1.34235 * 119.99981 * 325.00337 * 20 19 18 23 23 C 1.53005 * 109.46841 * 299.99321 * 19 18 16 24 24 C 1.52997 * 109.47010 * 300.00099 * 23 19 18 25 25 C 1.52998 * 109.47421 * 299.99813 * 24 23 19 26 26 C 1.53005 * 109.46876 * 60.00105 * 25 24 23 27 27 C 1.52997 * 109.47010 * 300.00146 * 26 25 24 28 28 H 1.09004 * 109.46564 * 304.93457 * 1 2 3 29 29 H 1.08997 * 109.47430 * 64.93239 * 1 2 3 30 30 H 1.09000 * 109.47089 * 184.93893 * 1 2 3 31 31 H 1.09003 * 109.46878 * 64.72482 * 3 2 1 32 32 H 1.08998 * 109.47442 * 304.71954 * 3 2 1 33 33 H 1.09003 * 109.46875 * 309.63912 * 4 3 2 34 34 H 1.08998 * 109.47312 * 189.63509 * 4 3 2 35 35 H 1.08998 * 109.47148 * 62.80522 * 6 5 4 36 36 H 1.08998 * 109.47085 * 182.79592 * 6 5 4 37 37 H 0.97003 * 120.00047 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.47419 * 69.99924 * 15 5 4 39 39 H 1.09005 * 109.47105 * 310.00221 * 15 5 4 40 40 H 0.97004 * 119.99617 * 359.97438 * 18 16 15 41 41 H 0.96695 * 116.99801 * 179.97438 * 22 20 19 42 42 H 1.09004 * 109.46990 * 180.02562 * 23 19 18 43 43 H 1.08999 * 109.46962 * 59.99833 * 23 19 18 44 44 H 1.09010 * 109.47036 * 179.97438 * 24 23 19 45 45 H 1.09004 * 109.47279 * 60.00134 * 24 23 19 46 46 H 1.09003 * 109.47572 * 180.02562 * 25 24 23 47 47 H 1.09004 * 109.47156 * 300.00396 * 25 24 23 48 48 H 1.09004 * 109.46990 * 60.00190 * 26 25 24 49 49 H 1.08999 * 109.46962 * 180.02562 * 26 25 24 50 50 H 1.09002 * 109.47218 * 180.02562 * 27 26 25 51 51 H 1.09004 * 109.47279 * 299.99866 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5310 1.1866 -0.1186 5 7 3.8816 0.7118 -1.4639 6 6 3.5744 -0.7168 -1.6145 7 6 4.3076 -1.5025 -0.5581 8 1 4.8801 -0.9865 0.1986 9 6 4.2475 -2.8800 -0.5573 10 7 3.4704 -3.5047 -1.4148 11 14 5.2700 -3.8588 0.6617 12 1 4.4468 -4.1756 1.8562 13 1 5.7250 -5.1209 0.0250 14 1 6.4511 -3.0579 1.0726 15 6 5.2937 0.9813 -1.7659 16 6 5.5560 0.7102 -3.2248 17 8 4.6554 0.3294 -3.9424 18 7 6.7917 0.8898 -3.7322 19 6 7.0465 0.6267 -5.1506 20 6 6.1737 1.5216 -5.9922 21 8 6.5873 1.9559 -7.0411 22 8 4.9367 1.8362 -5.5767 23 6 6.7279 -0.8368 -5.4631 24 6 7.6140 -1.7453 -4.6087 25 6 9.0849 -1.4653 -4.9230 26 6 9.4035 -0.0018 -4.6105 27 6 8.5174 0.9067 -5.4650 28 1 -0.3632 0.5885 0.8425 29 1 -0.3634 0.4354 -0.9308 30 1 -0.3633 -1.0239 0.0885 31 1 1.7571 1.8158 0.9293 32 1 1.6233 1.8754 -0.8447 33 1 3.8992 0.4787 0.6240 34 1 3.9861 2.1622 0.0524 35 1 2.5012 -0.8714 -1.5029 36 1 3.8892 -1.0540 -2.6020 37 1 3.4284 -4.4738 -1.4145 38 1 5.9254 0.3346 -1.1568 39 1 5.5202 2.0241 -1.5436 40 1 7.5121 1.1939 -3.1582 41 1 4.4146 2.4136 -6.1502 42 1 6.9179 -1.0326 -6.5185 43 1 5.6800 -1.0363 -5.2391 44 1 7.3867 -2.7880 -4.8310 45 1 7.4244 -1.5496 -3.5532 46 1 9.7163 -2.1129 -4.3146 47 1 9.2745 -1.6611 -5.9785 48 1 9.2139 0.1939 -3.5551 49 1 10.4513 0.1978 -4.8349 50 1 8.7447 1.9494 -5.2427 51 1 8.7070 0.7110 -6.5204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831724832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:19 Heat of formation + Delta-G solvation = -160.462184 kcal Electronic energy + Delta-G solvation = -33175.185132 eV Core-core repulsion = 28882.120138 eV Total energy + Delta-G solvation = -4293.064994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.01003 -39.00380 -37.95883 -37.24458 -35.84253 -35.38299 -33.46260 -32.28936 -30.86476 -30.43666 -29.26084 -27.30468 -25.86447 -24.72779 -24.26028 -22.79756 -22.59313 -21.15760 -20.66219 -19.53702 -18.87168 -17.96200 -16.93780 -16.71197 -16.12010 -15.92923 -15.72435 -15.46798 -15.00248 -14.86095 -14.53978 -14.25324 -14.09947 -13.81171 -13.67397 -13.41707 -13.19349 -13.04181 -12.70042 -12.41611 -12.27840 -12.24961 -12.11770 -11.71319 -11.30733 -11.25575 -11.21689 -11.04146 -11.00758 -10.86447 -10.79171 -10.62513 -10.55353 -10.50363 -10.26598 -10.11465 -10.02084 -9.74259 -9.43262 -8.91729 -8.74918 -8.71801 -8.09604 -7.04135 -5.82912 -3.87421 2.28434 3.14408 3.33669 3.41056 3.41330 3.42997 3.50245 4.44348 4.52686 4.56329 4.67151 4.83863 5.04731 5.10924 5.18780 5.34574 5.46446 5.47451 5.48366 5.52197 5.65063 5.68185 5.69987 5.79828 5.87823 5.89118 5.94933 5.96558 6.00176 6.08350 6.08936 6.10395 6.18943 6.27612 6.30151 6.39536 6.46775 6.52817 6.66398 6.74899 6.78258 7.45557 7.79058 7.91226 7.96342 8.12785 8.18931 8.29162 8.47958 8.55550 8.97555 9.22971 9.74228 11.22676 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.004515 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.323424 B = 6200.181331 C = 7869.732864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.353 6.353 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.520 5.520 6 C 0.178 3.822 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.068 3.932 10 N -0.885 5.885 11 Si 0.877 3.123 12 H -0.284 1.284 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.045 3.955 16 C 0.519 3.481 17 O -0.472 6.472 18 N -0.734 5.734 19 C 0.200 3.800 20 C 0.479 3.521 21 O -0.532 6.532 22 O -0.471 6.471 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.110 4.110 28 H 0.026 0.974 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.257 0.743 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.398 0.602 41 H 0.393 0.607 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.852 10.563 -3.984 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C -0.004 4.004 4 C -0.073 4.073 5 N -0.245 5.245 6 C 0.053 3.947 7 C -0.575 4.575 8 H 0.067 0.933 9 C -0.134 4.134 10 N -0.524 5.524 11 Si 0.705 3.295 12 H -0.210 1.210 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.087 4.087 16 C 0.305 3.695 17 O -0.342 6.342 18 N -0.392 5.392 19 C 0.111 3.889 20 C 0.321 3.679 21 O -0.422 6.422 22 O -0.278 6.278 23 C -0.167 4.167 24 C -0.150 4.150 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.148 4.148 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.233 0.767 41 H 0.250 0.750 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.222 10.042 -4.933 13.317 hybrid contribution 0.850 -0.349 1.220 1.527 sum 8.073 9.694 -3.713 13.150 Atomic orbital electron populations 1.22624 0.83327 1.01956 0.98553 1.88325 1.17516 1.26478 1.94748 1.22428 0.94471 0.85362 0.98139 1.22031 0.93614 0.98895 0.92804 1.62439 1.14557 1.23410 1.24092 1.20117 0.98632 0.78984 0.96932 1.21669 1.30748 0.91802 1.13312 0.93273 1.24837 0.95326 0.97769 0.95421 1.69976 1.37706 1.08175 1.36530 0.86843 0.80768 0.80021 0.81835 1.20989 1.21415 1.20278 1.21730 0.94259 1.00383 0.92308 1.20682 0.81266 0.77084 0.90421 1.90663 1.42893 1.40847 1.59815 1.46152 1.12585 1.72285 1.08208 1.19965 0.93061 0.94233 0.81617 1.24000 0.81143 0.78074 0.84700 1.90670 1.74575 1.52199 1.24757 1.85056 1.26316 1.63876 1.52564 1.21951 1.03743 0.90802 1.00154 1.21437 0.93399 0.99196 1.01013 1.21592 0.97014 0.95861 1.01420 1.21546 0.98903 0.95089 0.99917 1.21699 0.90482 1.00418 1.02206 0.95496 0.94867 0.90263 0.94671 0.93578 0.92059 0.92124 0.92636 0.93424 0.93318 0.91409 0.90673 0.76697 0.74989 0.91340 0.88153 0.91356 0.90749 0.91744 0.92042 0.91445 0.91301 0.90990 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.46 7.98 -35.23 -0.28 -7.74 16 3 C 0.07 1.31 6.20 37.16 0.23 1.54 16 4 C 0.06 1.03 5.32 -3.82 -0.02 1.01 16 5 N -0.52 -10.93 4.39 -237.52 -1.04 -11.97 16 6 C 0.18 4.62 4.37 -4.98 -0.02 4.60 16 7 C -0.54 -14.48 7.35 -34.44 -0.25 -14.73 16 8 H 0.05 1.30 5.96 -52.48 -0.31 0.99 16 9 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 10 N -0.88 -26.44 13.29 55.43 0.74 -25.71 16 11 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.04 0.80 5.29 -4.98 -0.03 0.77 16 16 C 0.52 9.22 6.43 -10.99 -0.07 9.15 16 17 O -0.47 -10.08 9.61 -18.95 -0.18 -10.27 16 18 N -0.73 -10.00 4.03 -48.69 -0.20 -10.20 16 19 C 0.20 2.71 0.63 -132.97 -0.08 2.63 16 20 C 0.48 7.30 7.08 36.00 0.25 7.55 16 21 O -0.53 -8.77 16.85 -18.75 -0.32 -9.09 16 22 O -0.47 -7.23 9.59 -47.38 -0.45 -7.69 16 23 C -0.13 -1.91 4.50 -26.73 -0.12 -2.03 16 24 C -0.11 -1.57 5.76 -26.73 -0.15 -1.72 16 25 C -0.12 -1.29 5.92 -26.73 -0.16 -1.44 16 26 C -0.12 -1.08 5.75 -26.73 -0.15 -1.24 16 27 C -0.11 -1.17 4.31 -26.73 -0.12 -1.29 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.29 5.86 -51.93 -0.30 0.99 16 34 H 0.06 0.92 7.77 -51.93 -0.40 0.52 16 35 H 0.06 1.61 5.73 -51.93 -0.30 1.31 16 36 H 0.05 1.38 5.80 -51.93 -0.30 1.08 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.27 6.86 -51.93 -0.36 0.91 16 39 H 0.08 1.08 7.84 -51.93 -0.41 0.67 16 40 H 0.40 4.27 7.32 -40.82 -0.30 3.97 16 41 H 0.39 4.38 9.10 45.56 0.41 4.79 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.88 6.16 -51.93 -0.32 1.56 16 44 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 45 H 0.07 1.18 7.60 -51.93 -0.39 0.79 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.61 6.86 -51.93 -0.36 0.25 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.09 0.97 7.87 -51.93 -0.41 0.57 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -34.75 390.59 -8.08 -42.83 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.53 Total: 9.26 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.32 Total: 8.27 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.50 Total: -47.87 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.23 Total: -34.78 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.75 -8.08 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831724832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.632 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds