Wall clock time and date at job start Wed Apr 1 2020 01:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00254 * 2 1 4 4 O 1.21630 * 120.00024 * 187.59711 * 3 2 1 5 5 C 1.47301 * 119.99636 * 7.59951 * 3 2 1 6 6 C 1.46614 * 120.61571 * 344.63079 * 5 3 2 7 7 C 1.34234 * 119.80899 * 180.02562 * 6 5 3 8 8 N 1.37390 * 120.96079 * 0.02562 * 7 6 5 9 9 C 1.34892 * 132.31467 * 179.97438 * 8 7 6 10 10 N 1.30986 * 109.50340 * 180.02562 * 9 8 7 11 11 C 1.33128 * 109.93663 * 359.97438 * 10 9 8 12 12 C 1.38197 * 120.82250 * 359.97438 * 8 7 6 13 13 C 1.38585 * 120.61500 * 164.35736 * 5 3 2 14 14 C 1.46507 * 120.00339 * 180.02562 * 2 1 3 15 15 C 1.53000 * 109.46582 * 296.43209 * 14 2 1 16 16 C 1.52999 * 109.47381 * 59.99827 * 15 14 2 17 17 C 1.52997 * 109.47221 * 59.99965 * 16 15 14 18 18 N 1.46500 * 109.47206 * 180.02562 * 17 16 15 19 19 C 1.36936 * 119.99872 * 274.99646 * 18 17 16 20 20 H 1.08004 * 120.00053 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00278 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00369 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99659 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47045 * 90.00131 * 23 21 19 25 25 H 1.48502 * 109.46933 * 209.99618 * 23 21 19 26 26 H 1.48498 * 109.47150 * 329.99905 * 23 21 19 27 27 C 1.53001 * 109.47260 * 299.99671 * 17 16 15 28 28 C 1.53003 * 109.46702 * 56.42764 * 14 2 1 29 29 H 1.09000 * 109.47260 * 187.32198 * 1 2 3 30 30 H 1.08993 * 109.47097 * 307.32634 * 1 2 3 31 31 H 1.09003 * 109.47062 * 67.32954 * 1 2 3 32 32 H 1.07997 * 120.09618 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.51795 * 179.97438 * 7 6 5 34 34 H 1.07996 * 125.24162 * 0.02562 * 9 8 7 35 35 H 1.07998 * 126.30745 * 179.97438 * 11 10 9 36 36 H 1.07998 * 120.48956 * 359.97438 * 13 5 3 37 37 H 1.08988 * 109.47422 * 176.42758 * 14 2 1 38 38 H 1.09005 * 109.46798 * 179.97438 * 15 14 2 39 39 H 1.08995 * 109.46992 * 299.99172 * 15 14 2 40 40 H 1.09001 * 109.46796 * 179.97438 * 16 15 14 41 41 H 1.08995 * 109.46952 * 299.99666 * 16 15 14 42 42 H 1.08995 * 109.47402 * 59.99976 * 17 16 15 43 43 H 0.96993 * 120.00406 * 94.99482 * 18 17 16 44 44 H 0.96998 * 120.00235 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.47155 * 300.00429 * 27 17 16 46 46 H 1.08994 * 109.47729 * 180.02562 * 27 17 16 47 47 H 1.08998 * 109.47440 * 60.00581 * 28 14 2 48 48 H 1.09005 * 109.46915 * 180.02562 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3472 1.1718 -0.1393 5 6 1.4121 2.4372 0.1687 6 6 -0.0436 2.4921 0.0032 7 6 -0.6896 3.6583 0.1602 8 7 -0.0063 4.8080 0.4745 9 6 -0.4119 6.0778 0.6810 10 7 0.6251 6.8288 0.9574 11 6 1.7347 6.0932 0.9441 12 6 1.3659 4.7939 0.6381 13 6 2.0909 3.6013 0.4924 14 6 2.1976 -1.2687 -0.0006 15 6 1.8965 -2.0320 1.2908 16 6 0.3947 -2.3102 1.3805 17 6 -0.0411 -3.1502 0.1783 18 7 -1.4792 -3.4161 0.2639 19 6 -1.9371 -4.4742 1.0026 20 1 -1.2380 -5.1126 1.5226 21 6 -3.2998 -4.7260 1.0842 22 7 -3.7399 -5.7427 1.7947 23 14 -4.5089 -3.6215 0.1855 24 1 -4.7444 -4.1539 -1.1806 25 1 -5.7931 -3.5842 0.9304 26 1 -3.9505 -2.2487 0.0924 27 6 0.2599 -2.3870 -1.1131 28 6 1.7617 -2.1087 -1.2029 29 1 -0.3634 -1.0193 0.1310 30 1 -0.3633 0.6231 0.8171 31 1 -0.3633 0.3961 -0.9483 32 1 -0.5947 1.5969 -0.2443 33 1 -1.7619 3.6935 0.0367 34 1 -1.4341 6.4221 0.6267 35 1 2.7375 6.4451 1.1358 36 1 3.1626 3.5917 0.6255 37 1 3.2674 -1.0706 -0.0645 38 1 2.4412 -2.9762 1.2902 39 1 2.2070 -1.4336 2.1473 40 1 0.1803 -2.8543 2.3004 41 1 -0.1503 -1.3663 1.3809 42 1 0.5039 -4.0941 0.1779 43 1 -2.1071 -2.8426 -0.2027 44 1 -4.6921 -5.9184 1.8520 45 1 -0.2851 -1.4429 -1.1127 46 1 -0.0509 -2.9851 -1.9696 47 1 1.9762 -1.5650 -2.1229 48 1 2.3065 -3.0529 -1.2031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963633607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:19 Heat of formation + Delta-G solvation = 151.259272 kcal Electronic energy + Delta-G solvation = -30381.056352 eV Core-core repulsion = 26441.110286 eV Total energy + Delta-G solvation = -3939.946067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.05545 -41.09962 -38.72468 -37.19478 -35.22698 -33.85461 -33.28882 -31.79718 -30.86158 -30.65031 -29.39658 -28.74955 -26.61727 -24.88146 -23.58464 -22.97325 -22.40230 -22.22631 -21.21814 -20.21413 -19.46780 -18.23207 -18.18137 -17.64866 -16.29595 -16.06184 -15.97682 -15.86591 -15.42308 -15.00879 -14.96950 -14.74826 -14.26225 -14.13222 -13.86563 -13.77376 -13.22666 -12.92331 -12.85023 -12.68259 -12.46423 -12.36575 -12.13678 -12.07264 -12.00397 -11.41752 -11.16504 -11.00954 -10.99033 -10.92799 -10.66808 -10.48700 -10.30436 -10.11056 -9.93071 -9.65584 -9.64128 -9.26583 -8.96899 -8.71266 -7.88130 -7.37766 -5.85256 -3.21961 0.19492 0.78159 2.25680 2.41286 2.72816 2.78632 3.25072 3.26985 3.29999 3.37084 4.02198 4.10186 4.25637 4.32682 4.49395 4.58002 4.59550 4.79265 4.82596 4.87377 5.01283 5.06949 5.10651 5.23961 5.32720 5.33804 5.38754 5.45742 5.51800 5.54555 5.61394 5.64975 5.67599 5.77391 5.78685 5.86799 6.08587 6.11492 6.15996 6.17091 6.23217 6.27123 6.45092 6.56163 6.76126 6.78297 6.89716 7.21507 7.48631 7.90405 7.96500 8.33263 9.11020 9.83114 10.01832 11.33046 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.003036 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.579741 B = 9219.253044 C =10780.633350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.589 5.589 3 C 0.565 3.435 4 O -0.541 6.541 5 C -0.146 4.146 6 C -0.151 4.151 7 C 0.035 3.965 8 N -0.364 5.364 9 C 0.150 3.850 10 N -0.461 5.461 11 C 0.005 3.995 12 C -0.019 4.019 13 C 0.006 3.994 14 C 0.140 3.860 15 C -0.125 4.125 16 C -0.164 4.164 17 C 0.179 3.821 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.165 4.165 28 C -0.120 4.120 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.196 0.804 33 H 0.170 0.830 34 H 0.212 0.788 35 H 0.184 0.816 36 H 0.158 0.842 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.359 0.641 44 H 0.260 0.740 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.024 19.117 -4.910 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.320 5.320 3 C 0.355 3.645 4 O -0.420 6.420 5 C -0.152 4.152 6 C -0.171 4.171 7 C -0.082 4.082 8 N -0.035 5.035 9 C -0.125 4.125 10 N -0.175 5.175 11 C -0.152 4.152 12 C -0.127 4.127 13 C -0.015 4.015 14 C 0.037 3.963 15 C -0.164 4.164 16 C -0.204 4.204 17 C 0.070 3.930 18 N -0.391 5.391 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.203 4.203 28 C -0.159 4.159 29 H 0.171 0.829 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.212 0.788 33 H 0.187 0.813 34 H 0.229 0.771 35 H 0.201 0.799 36 H 0.176 0.824 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.191 0.809 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.408 19.725 -4.688 22.351 hybrid contribution -1.211 -0.084 -0.670 1.386 sum 8.197 19.641 -5.358 21.947 Atomic orbital electron populations 1.24067 0.80902 1.08564 1.00338 1.47603 1.06631 1.05546 1.72213 1.17887 0.86689 0.83265 0.76697 1.90783 1.13841 1.87092 1.50309 1.20940 0.93210 0.94067 1.07004 1.23895 0.93929 0.99245 1.00002 1.21686 0.98582 0.83899 1.04068 1.43026 1.07993 1.08790 1.43730 1.24982 1.00788 0.78292 1.08425 1.69985 0.98120 1.32687 1.16670 1.22780 0.98422 0.87463 1.06488 1.19594 0.83283 0.97396 1.12474 1.20933 1.00456 0.87931 0.92165 1.21212 0.97147 0.82097 0.95821 1.21882 0.98350 0.99988 0.96213 1.22816 0.93855 1.01715 1.01980 1.20223 0.85840 0.96152 0.90772 1.42799 1.01156 1.34528 1.60625 1.19058 0.92051 1.03572 1.22690 0.89191 1.24691 0.96633 0.97893 0.99915 1.69694 1.13775 1.30176 1.44380 0.86565 0.81651 0.80533 0.79767 1.21114 1.21793 1.20421 1.22638 0.95811 1.02131 0.99717 1.21782 0.96987 0.99919 0.97203 0.82926 0.90718 0.91567 0.78795 0.81294 0.77130 0.79850 0.82430 0.88252 0.90667 0.92232 0.91193 0.90567 0.92304 0.80853 0.93012 0.89714 0.91462 0.91874 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 4.70 59.85 0.28 0.30 16 2 N -0.59 -6.84 2.76 -188.04 -0.52 -7.36 16 3 C 0.57 7.26 7.58 -12.57 -0.10 7.16 16 4 O -0.54 -8.43 15.84 5.25 0.08 -8.35 16 5 C -0.15 -1.61 5.98 -102.71 -0.61 -2.22 16 6 C -0.15 -1.31 8.01 -37.62 -0.30 -1.61 16 7 C 0.04 0.28 10.92 -16.47 -0.18 0.10 16 8 N -0.36 -3.46 2.94 -62.50 -0.18 -3.65 16 9 C 0.15 1.35 12.70 -90.11 -1.14 0.21 16 10 N -0.46 -5.12 11.18 -13.91 -0.16 -5.27 16 11 C 0.01 0.05 12.03 -16.90 -0.20 -0.15 16 12 C -0.02 -0.20 6.77 -84.12 -0.57 -0.77 16 13 C 0.01 0.07 9.70 -38.67 -0.37 -0.31 16 14 C 0.14 1.67 3.15 -67.93 -0.21 1.45 16 15 C -0.13 -1.56 5.63 -26.73 -0.15 -1.71 16 16 C -0.16 -2.43 5.13 -26.73 -0.14 -2.57 16 17 C 0.18 2.94 2.42 -67.93 -0.16 2.78 16 18 N -0.75 -15.61 4.92 -53.43 -0.26 -15.87 16 19 C -0.24 -6.37 10.41 -15.06 -0.16 -6.53 16 20 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 22 N -0.93 -28.13 13.97 55.49 0.78 -27.36 16 23 Si 0.88 20.55 27.74 -169.99 -4.71 15.84 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -5.81 6.52 56.52 0.37 -5.44 16 27 C -0.17 -2.15 5.01 -26.73 -0.13 -2.29 16 28 C -0.12 -1.37 5.62 -26.73 -0.15 -1.52 16 29 H 0.15 1.82 1.81 -51.93 -0.09 1.73 16 30 H 0.07 0.68 5.85 -51.93 -0.30 0.37 16 31 H 0.07 0.54 6.30 -51.93 -0.33 0.21 16 32 H 0.20 1.39 2.99 -68.08 -0.20 1.18 16 33 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.16 1.52 7.76 -52.49 -0.41 1.11 16 37 H 0.10 1.26 6.91 -51.94 -0.36 0.90 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.07 4.32 -51.93 -0.22 0.84 16 42 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 43 H 0.36 7.23 5.66 -40.82 -0.23 7.00 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.08 1.00 3.76 -51.93 -0.20 0.81 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -33.67 364.21 -10.06 -43.73 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.16 Total: 10.46 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.40 Total: -7.66 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.35 Total: -59.51 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.08 Total: -8.35 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.71 Total: 15.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.67 -10.06 -43.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963633607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.985 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds