Wall clock time and date at job start Wed Apr 1 2020 01:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00254 * 2 1 4 4 O 1.21630 * 120.00024 * 187.59711 * 3 2 1 5 5 C 1.47301 * 119.99636 * 7.59951 * 3 2 1 6 6 C 1.46614 * 120.61571 * 344.63079 * 5 3 2 7 7 C 1.34234 * 119.80899 * 180.02562 * 6 5 3 8 8 N 1.37390 * 120.96079 * 0.02562 * 7 6 5 9 9 C 1.34892 * 132.31467 * 179.97438 * 8 7 6 10 10 N 1.30986 * 109.50340 * 180.02562 * 9 8 7 11 11 C 1.33128 * 109.93663 * 359.97438 * 10 9 8 12 12 C 1.38197 * 120.82250 * 359.97438 * 8 7 6 13 13 C 1.38585 * 120.61500 * 164.35736 * 5 3 2 14 14 C 1.46507 * 120.00339 * 180.02562 * 2 1 3 15 15 C 1.53000 * 109.46582 * 296.43209 * 14 2 1 16 16 C 1.52999 * 109.47381 * 59.99827 * 15 14 2 17 17 C 1.52997 * 109.47221 * 59.99965 * 16 15 14 18 18 N 1.46500 * 109.47206 * 180.02562 * 17 16 15 19 19 C 1.36936 * 119.99872 * 274.99646 * 18 17 16 20 20 H 1.08004 * 120.00053 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00278 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00369 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99659 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47045 * 90.00131 * 23 21 19 25 25 H 1.48502 * 109.46933 * 209.99618 * 23 21 19 26 26 H 1.48498 * 109.47150 * 329.99905 * 23 21 19 27 27 C 1.53001 * 109.47260 * 299.99671 * 17 16 15 28 28 C 1.53003 * 109.46702 * 56.42764 * 14 2 1 29 29 H 1.09000 * 109.47260 * 187.32198 * 1 2 3 30 30 H 1.08993 * 109.47097 * 307.32634 * 1 2 3 31 31 H 1.09003 * 109.47062 * 67.32954 * 1 2 3 32 32 H 1.07997 * 120.09618 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.51795 * 179.97438 * 7 6 5 34 34 H 1.07996 * 125.24162 * 0.02562 * 9 8 7 35 35 H 1.07998 * 126.30745 * 179.97438 * 11 10 9 36 36 H 1.07998 * 120.48956 * 359.97438 * 13 5 3 37 37 H 1.08988 * 109.47422 * 176.42758 * 14 2 1 38 38 H 1.09005 * 109.46798 * 179.97438 * 15 14 2 39 39 H 1.08995 * 109.46992 * 299.99172 * 15 14 2 40 40 H 1.09001 * 109.46796 * 179.97438 * 16 15 14 41 41 H 1.08995 * 109.46952 * 299.99666 * 16 15 14 42 42 H 1.08995 * 109.47402 * 59.99976 * 17 16 15 43 43 H 0.96993 * 120.00406 * 94.99482 * 18 17 16 44 44 H 0.96998 * 120.00235 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.47155 * 300.00429 * 27 17 16 46 46 H 1.08994 * 109.47729 * 180.02562 * 27 17 16 47 47 H 1.08998 * 109.47440 * 60.00581 * 28 14 2 48 48 H 1.09005 * 109.46915 * 180.02562 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3472 1.1718 -0.1393 5 6 1.4121 2.4372 0.1687 6 6 -0.0436 2.4921 0.0032 7 6 -0.6896 3.6583 0.1602 8 7 -0.0063 4.8080 0.4745 9 6 -0.4119 6.0778 0.6810 10 7 0.6251 6.8288 0.9574 11 6 1.7347 6.0932 0.9441 12 6 1.3659 4.7939 0.6381 13 6 2.0909 3.6013 0.4924 14 6 2.1976 -1.2687 -0.0006 15 6 1.8965 -2.0320 1.2908 16 6 0.3947 -2.3102 1.3805 17 6 -0.0411 -3.1502 0.1783 18 7 -1.4792 -3.4161 0.2639 19 6 -1.9371 -4.4742 1.0026 20 1 -1.2380 -5.1126 1.5226 21 6 -3.2998 -4.7260 1.0842 22 7 -3.7399 -5.7427 1.7947 23 14 -4.5089 -3.6215 0.1855 24 1 -4.7444 -4.1539 -1.1806 25 1 -5.7931 -3.5842 0.9304 26 1 -3.9505 -2.2487 0.0924 27 6 0.2599 -2.3870 -1.1131 28 6 1.7617 -2.1087 -1.2029 29 1 -0.3634 -1.0193 0.1310 30 1 -0.3633 0.6231 0.8171 31 1 -0.3633 0.3961 -0.9483 32 1 -0.5947 1.5969 -0.2443 33 1 -1.7619 3.6935 0.0367 34 1 -1.4341 6.4221 0.6267 35 1 2.7375 6.4451 1.1358 36 1 3.1626 3.5917 0.6255 37 1 3.2674 -1.0706 -0.0645 38 1 2.4412 -2.9762 1.2902 39 1 2.2070 -1.4336 2.1473 40 1 0.1803 -2.8543 2.3004 41 1 -0.1503 -1.3663 1.3809 42 1 0.5039 -4.0941 0.1779 43 1 -2.1071 -2.8426 -0.2027 44 1 -4.6921 -5.9184 1.8520 45 1 -0.2851 -1.4429 -1.1127 46 1 -0.0509 -2.9851 -1.9696 47 1 1.9762 -1.5650 -2.1229 48 1 2.3065 -3.0529 -1.2031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963633607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:18 Heat of formation + Delta-G solvation = 131.439604 kcal Electronic energy + Delta-G solvation = -30381.915798 eV Core-core repulsion = 26441.110286 eV Total energy + Delta-G solvation = -3940.805512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.73427 -42.08401 -39.78138 -37.94154 -36.61662 -34.94100 -34.26895 -33.30556 -31.88047 -31.73184 -30.60111 -29.49210 -27.70574 -25.80875 -24.95229 -23.92914 -23.49936 -22.90596 -22.32820 -21.40838 -20.45783 -19.53372 -18.98535 -18.86239 -17.12026 -16.99336 -16.90521 -16.68599 -16.58617 -16.39601 -15.73564 -15.68855 -15.43752 -15.14533 -14.87022 -14.69992 -14.55057 -14.38909 -13.93163 -13.76974 -13.64290 -13.22679 -13.11816 -13.11540 -12.86398 -12.82213 -12.78910 -12.24402 -12.08748 -11.97938 -11.76374 -11.73497 -11.50151 -11.39494 -11.29443 -11.06197 -10.86706 -10.35924 -10.17776 -9.65867 -9.25142 -8.56413 -7.96104 -5.30047 -0.55430 0.14170 1.41514 1.48498 1.55674 1.58543 1.64088 1.88932 2.03911 2.48635 2.55270 3.29323 3.35218 3.45132 3.52711 3.63652 3.77143 3.84941 3.87489 3.89388 3.97004 4.11689 4.19010 4.24583 4.29045 4.40071 4.44587 4.55703 4.59760 4.65058 4.67598 4.72456 4.76637 4.78803 4.89631 4.95771 5.00509 5.09159 5.16438 5.20972 5.34511 5.41719 5.44684 5.48667 5.59967 5.65236 5.84351 6.18042 6.27103 6.30736 6.79583 7.02828 7.15016 7.89604 8.10699 9.25719 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.003036 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.579741 B = 9219.253044 C =10780.633350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.586 5.586 3 C 0.563 3.437 4 O -0.578 6.578 5 C -0.158 4.158 6 C -0.161 4.161 7 C 0.044 3.956 8 N -0.371 5.371 9 C 0.159 3.841 10 N -0.494 5.494 11 C -0.005 4.005 12 C -0.037 4.037 13 C -0.002 4.002 14 C 0.143 3.857 15 C -0.117 4.117 16 C -0.155 4.155 17 C 0.176 3.824 18 N -0.747 5.747 19 C -0.225 4.225 20 H 0.049 0.951 21 C -0.071 4.071 22 N -0.990 5.990 23 Si 0.956 3.044 24 H -0.283 1.283 25 H -0.304 1.304 26 H -0.233 1.233 27 C -0.156 4.156 28 C -0.112 4.112 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.214 0.786 33 H 0.211 0.789 34 H 0.249 0.751 35 H 0.199 0.801 36 H 0.155 0.845 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.093 0.907 42 H 0.036 0.964 43 H 0.368 0.632 44 H 0.255 0.745 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 22.020 -6.701 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 N -0.316 5.316 3 C 0.354 3.646 4 O -0.460 6.460 5 C -0.164 4.164 6 C -0.179 4.179 7 C -0.073 4.073 8 N -0.042 5.042 9 C -0.117 4.117 10 N -0.208 5.208 11 C -0.161 4.161 12 C -0.146 4.146 13 C -0.023 4.023 14 C 0.040 3.960 15 C -0.156 4.156 16 C -0.194 4.194 17 C 0.069 3.931 18 N -0.391 5.391 19 C -0.356 4.356 20 H 0.067 0.933 21 C -0.262 4.262 22 N -0.641 5.641 23 Si 0.783 3.217 24 H -0.209 1.209 25 H -0.231 1.231 26 H -0.156 1.156 27 C -0.193 4.193 28 C -0.151 4.151 29 H 0.152 0.848 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.229 0.771 33 H 0.228 0.772 34 H 0.265 0.735 35 H 0.216 0.784 36 H 0.172 0.828 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.054 0.946 43 H 0.202 0.798 44 H 0.064 0.936 45 H 0.125 0.875 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.160 22.662 -6.501 24.948 hybrid contribution -0.706 -0.990 -0.052 1.217 sum 7.454 21.672 -6.554 23.837 Atomic orbital electron populations 1.24186 0.79703 1.07850 1.02784 1.47616 1.07355 1.04983 1.71625 1.18181 0.86346 0.84047 0.76060 1.90762 1.15462 1.87624 1.52128 1.20932 0.94600 0.93018 1.07800 1.24015 0.92574 1.00438 1.00917 1.22349 1.00262 0.82811 1.01874 1.43235 1.07636 1.09551 1.43823 1.25759 1.01802 0.77859 1.06237 1.69997 0.98965 1.33750 1.18083 1.23149 0.99173 0.87589 1.06170 1.19657 0.84213 0.97329 1.13355 1.20957 1.00562 0.88239 0.92546 1.21111 0.97041 0.82363 0.95435 1.21796 0.96568 1.00351 0.96916 1.22676 0.95710 1.01629 0.99391 1.20384 0.83148 0.96099 0.93502 1.42721 1.03223 1.33232 1.59884 1.18970 0.91396 1.03768 1.21437 0.93258 1.25587 0.98938 0.99971 1.01680 1.69910 1.13826 1.33088 1.47274 0.85399 0.78057 0.80593 0.77683 1.20905 1.23104 1.15630 1.22563 0.97151 1.02486 0.97095 1.21727 0.95797 1.00197 0.97396 0.84761 0.89101 0.88465 0.77059 0.77239 0.73488 0.78437 0.82763 0.88894 0.90449 0.92161 0.94559 0.88879 0.94563 0.79830 0.93606 0.87544 0.91609 0.90564 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 4.70 127.77 0.60 0.51 16 2 N -0.59 -12.13 2.76 -867.09 -2.39 -14.52 16 3 C 0.56 13.55 7.58 86.63 0.66 14.21 16 4 O -0.58 -17.75 15.84 -4.12 -0.07 -17.82 16 5 C -0.16 -3.15 5.98 -18.62 -0.11 -3.26 16 6 C -0.16 -2.16 8.01 23.54 0.19 -1.97 16 7 C 0.04 0.49 10.92 82.91 0.91 1.40 16 8 N -0.37 -5.92 2.94 -351.65 -1.03 -6.95 16 9 C 0.16 2.36 12.70 180.17 2.29 4.65 16 10 N -0.49 -10.10 11.18 -197.91 -2.21 -12.31 16 11 C 0.00 -0.09 12.03 84.55 1.02 0.92 16 12 C -0.04 -0.73 6.77 38.71 0.26 -0.47 16 13 C 0.00 -0.04 9.70 22.86 0.22 0.19 16 14 C 0.14 3.17 3.15 44.99 0.14 3.32 16 15 C -0.12 -2.83 5.63 30.59 0.17 -2.66 16 16 C -0.15 -4.47 5.13 30.59 0.16 -4.31 16 17 C 0.18 5.61 2.42 44.99 0.11 5.72 16 18 N -0.75 -30.19 4.92 -322.94 -1.59 -31.78 16 19 C -0.22 -11.92 10.41 84.03 0.87 -11.05 16 20 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 21 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 22 N -0.99 -61.75 13.97 21.65 0.30 -61.44 16 23 Si 0.96 41.50 27.74 68.60 1.90 43.40 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.23 -8.27 6.52 99.48 0.65 -7.62 16 27 C -0.16 -3.62 5.01 30.60 0.15 -3.46 16 28 C -0.11 -2.29 5.62 30.60 0.17 -2.12 16 29 H 0.14 2.70 1.81 -2.39 0.00 2.69 16 30 H 0.09 1.24 5.85 -2.39 -0.01 1.23 16 31 H 0.10 1.03 6.30 -2.39 -0.02 1.02 16 32 H 0.21 1.92 2.99 -17.56 -0.05 1.87 16 33 H 0.21 0.50 8.06 -2.91 -0.02 0.48 16 34 H 0.25 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.15 3.05 7.76 -2.91 -0.02 3.02 16 37 H 0.09 2.26 6.91 -2.39 -0.02 2.25 16 38 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 2.39 4.32 -2.39 -0.01 2.38 16 42 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 43 H 0.37 13.59 5.66 -92.71 -0.52 13.07 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.11 2.06 3.76 -2.38 -0.01 2.05 16 46 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -76.96 364.21 3.58 -73.38 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.39 Total: 29.92 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 8.28 Total: -1.89 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -6.93 Total: -127.00 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.07 Total: -17.82 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.90 Total: 43.40 kcal Total: -76.96 3.58 -73.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963633607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.824 kcal (2) G-P(sol) polarization free energy of solvation -76.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds