Wall clock time and date at job start Wed Apr 1 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00014 * 2 1 4 4 O 1.21282 * 119.99741 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00240 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.47218 * 180.02562 * 5 3 2 7 7 N 1.30237 * 126.10233 * 269.68186 * 6 5 3 8 8 N 1.39874 * 110.08474 * 179.90096 * 7 6 5 9 9 H 0.96997 * 125.46238 * 180.14264 * 8 7 6 10 10 C 1.37034 * 109.07629 * 0.37266 * 8 7 6 11 11 C 1.39284 * 133.85319 * 179.78616 * 10 8 7 12 12 C 1.36594 * 119.85468 * 180.02562 * 11 10 8 13 13 C 1.38971 * 120.81304 * 0.02562 * 12 11 10 14 14 C 1.36463 * 120.62591 * 359.97438 * 13 12 11 15 15 C 1.39937 * 119.63842 * 0.02562 * 14 13 12 16 16 C 1.46507 * 119.99627 * 179.97438 * 2 1 3 17 17 C 1.53036 * 109.45897 * 60.00447 * 16 2 1 18 18 C 1.53191 * 109.31166 * 178.61271 * 17 16 2 19 19 N 1.46926 * 108.89452 * 54.56289 * 18 17 16 20 20 C 1.36934 * 120.63630 * 126.46229 * 19 18 17 21 21 H 1.08000 * 119.99464 * 331.92669 * 20 19 18 22 22 C 1.38810 * 120.00385 * 151.92945 * 20 19 18 23 23 N 1.31619 * 119.99689 * 343.17004 * 22 20 19 24 24 Si 1.86795 * 119.99988 * 163.17171 * 22 20 19 25 25 H 1.48503 * 109.47611 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47271 * 120.00121 * 24 22 20 27 27 H 1.48496 * 109.47355 * 239.99904 * 24 22 20 28 28 C 1.46973 * 118.71425 * 306.64410 * 19 18 17 29 29 C 1.53043 * 109.45897 * 299.93127 * 16 2 1 30 30 H 1.08994 * 109.47201 * 270.00443 * 1 2 3 31 31 H 1.09000 * 109.46830 * 30.00191 * 1 2 3 32 32 H 1.08996 * 109.47301 * 149.99881 * 1 2 3 33 33 H 1.09009 * 109.46867 * 299.99560 * 5 3 2 34 34 H 1.08998 * 109.47719 * 59.99016 * 5 3 2 35 35 H 1.07996 * 120.07436 * 0.02562 * 11 10 8 36 36 H 1.07998 * 119.59219 * 179.97438 * 12 11 10 37 37 H 1.07998 * 119.68141 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.17463 * 179.97438 * 14 13 12 39 39 H 1.08996 * 109.45453 * 179.97438 * 16 2 1 40 40 H 1.09001 * 109.50071 * 58.66060 * 17 16 2 41 41 H 1.09005 * 109.49477 * 298.56396 * 17 16 2 42 42 H 1.09000 * 109.58954 * 174.41929 * 18 17 16 43 43 H 1.08996 * 109.58649 * 294.70243 * 18 17 16 44 44 H 0.97000 * 119.99637 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.46458 * 293.56938 * 28 19 18 46 46 H 1.08992 * 109.71060 * 173.28601 * 28 19 18 47 47 H 1.08995 * 109.49931 * 301.34255 * 29 16 2 48 48 H 1.08997 * 109.49588 * 61.40711 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3648 3.6177 -0.0002 7 7 2.8599 4.2048 1.0517 8 7 3.7366 5.2238 0.6651 9 1 4.2295 5.8012 1.2688 10 6 3.7836 5.2789 -0.7033 11 6 4.4681 6.0805 -1.6139 12 6 4.2988 5.8832 -2.9549 13 6 3.4490 4.8900 -3.4266 14 6 2.7655 4.0896 -2.5581 15 6 2.9221 4.2720 -1.1795 16 6 2.1975 -1.2688 0.0006 17 6 1.8276 -2.0716 -1.2488 18 6 2.6211 -3.3818 -1.2624 19 7 2.3880 -4.0925 0.0023 20 6 1.9570 -5.3922 0.0031 21 1 1.3676 -5.7662 -0.8210 22 6 2.2775 -6.2291 1.0632 23 7 3.2475 -5.9014 1.8903 24 14 1.3321 -7.8202 1.3159 25 1 0.2988 -7.9555 0.2580 26 1 2.2693 -8.9698 1.2430 27 1 0.6762 -7.8001 2.6480 28 6 2.6223 -3.3800 1.2662 29 6 1.8288 -2.0698 1.2515 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 0.7585 2.5302 -0.8893 34 1 0.7590 2.5299 0.8907 35 1 5.1312 6.8562 -1.2604 36 1 4.8313 6.5075 -3.6571 37 1 3.3292 4.7497 -4.4907 38 1 2.1067 3.3202 -2.9327 39 1 3.2690 -1.0694 0.0000 40 1 2.0689 -1.4908 -2.1391 41 1 0.7603 -2.2927 -1.2363 42 1 2.2898 -4.0011 -2.0959 43 1 3.6839 -3.1643 -1.3687 44 1 3.4717 -6.4864 2.6308 45 1 3.6854 -3.1622 1.3686 46 1 2.2936 -3.9970 2.1024 47 1 2.0709 -1.4877 2.1406 48 1 0.7614 -2.2905 1.2406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006438021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:32 Heat of formation + Delta-G solvation = 75.428186 kcal Electronic energy + Delta-G solvation = -29597.381869 eV Core-core repulsion = 25654.147520 eV Total energy + Delta-G solvation = -3943.234349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.50856 -39.86781 -37.53850 -37.24629 -35.08057 -33.60951 -32.46085 -30.78613 -30.18455 -29.92228 -29.58219 -28.29758 -26.84563 -24.95804 -23.25678 -22.44987 -22.28306 -22.16113 -20.54329 -19.12516 -18.73721 -18.04768 -17.12346 -17.05943 -16.70594 -15.87381 -15.52504 -15.42716 -14.90278 -14.73641 -14.51737 -14.14168 -13.87500 -13.61311 -13.48416 -13.23636 -13.19204 -13.00191 -12.60789 -12.42879 -12.29327 -12.13883 -12.08852 -12.06528 -11.46257 -11.31203 -11.11393 -10.90291 -10.79668 -10.73014 -10.41856 -10.33917 -10.17370 -10.07415 -9.76027 -9.66189 -9.45022 -8.87462 -8.53000 -8.28979 -8.19133 -6.67674 -5.78486 -3.21281 0.73645 1.30449 2.19234 2.47816 2.74234 3.20834 3.37233 3.44947 3.46991 3.60037 4.16315 4.31981 4.46821 4.49589 4.61533 4.74936 4.95982 5.06082 5.14453 5.16252 5.22151 5.33676 5.38463 5.40561 5.44494 5.52662 5.60163 5.67544 5.73479 5.75519 5.89012 6.08428 6.09879 6.21830 6.26409 6.29637 6.34213 6.50316 6.60015 6.63215 6.64044 6.78384 6.92079 6.97502 7.09556 7.35889 7.41410 7.55687 7.68052 7.80130 8.32021 8.45243 9.21242 9.84622 10.41798 11.30335 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.002220 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.489885 B =12608.542316 C =12852.450232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.515 3.485 4 O -0.532 6.532 5 C -0.063 4.063 6 C 0.126 3.874 7 N -0.238 5.238 8 N -0.509 5.509 9 H 0.439 0.561 10 C 0.129 3.871 11 C -0.144 4.144 12 C -0.071 4.071 13 C -0.161 4.161 14 C -0.036 4.036 15 C -0.164 4.164 16 C 0.146 3.854 17 C -0.137 4.137 18 C 0.148 3.852 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.173 3.827 29 C -0.144 4.144 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.253 0.747 45 H 0.020 0.980 46 H 0.090 0.910 47 H 0.050 0.950 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 24.794 -7.682 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C 0.301 3.699 4 O -0.408 6.408 5 C -0.105 4.105 6 C -0.053 4.053 7 N -0.052 5.052 8 N -0.223 5.223 9 H 0.284 0.716 10 C 0.013 3.987 11 C -0.167 4.167 12 C -0.091 4.091 13 C -0.181 4.181 14 C -0.056 4.056 15 C -0.171 4.171 16 C 0.044 3.956 17 C -0.178 4.178 18 C 0.021 3.979 19 N -0.315 5.315 20 C -0.381 4.381 21 H 0.084 0.916 22 C -0.197 4.197 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.047 3.953 29 C -0.184 4.184 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.108 0.892 47 H 0.069 0.931 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.143 24.719 -6.234 25.827 hybrid contribution -0.171 -0.487 -0.190 0.550 sum -4.314 24.232 -6.424 25.438 Atomic orbital electron populations 1.21802 0.80040 1.03136 1.02005 1.48124 1.06920 1.06205 1.72796 1.20197 0.88029 0.84768 0.76886 1.90737 1.13768 1.87052 1.49229 1.20116 0.95947 0.88392 1.06001 1.22677 0.97478 0.96123 0.89035 1.76516 1.05062 1.00550 1.23041 1.45831 1.41182 1.31776 1.03508 0.71612 1.18838 0.97616 0.97220 0.84989 1.19810 1.03129 1.01591 0.92122 1.20716 0.96898 0.97075 0.94431 1.20659 0.99831 0.97791 0.99812 1.20360 0.97473 0.97455 0.90340 1.19696 1.03400 0.99853 0.94195 1.21193 0.97307 0.80805 0.96299 1.22367 1.01323 0.98042 0.96028 1.20857 0.95847 0.90931 0.90306 1.44093 1.77982 1.10033 0.99409 1.19209 1.25865 0.86481 1.06589 0.91613 1.25067 0.96953 0.97696 0.99989 1.70044 1.28288 1.38150 1.18141 0.86234 0.79479 0.83387 0.77730 1.20259 1.21737 1.21588 1.20758 0.95335 0.88697 0.90504 1.22540 1.01573 0.98876 0.95448 0.92470 0.91476 0.90299 0.86694 0.86851 0.85765 0.85400 0.85561 0.85605 0.88753 0.92908 0.92019 0.92483 0.96260 0.93646 0.96211 0.89193 0.93114 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 9.33 59.85 0.56 1.30 16 2 N -0.61 -8.63 2.76 -173.89 -0.48 -9.11 16 3 C 0.52 7.70 7.67 -10.99 -0.08 7.62 16 4 O -0.53 -10.44 15.36 5.56 0.09 -10.35 16 5 C -0.06 -0.67 4.85 -29.03 -0.14 -0.82 16 6 C 0.13 1.65 5.92 -80.19 -0.48 1.18 16 7 N -0.24 -3.32 12.55 34.84 0.44 -2.88 16 8 N -0.51 -5.86 7.37 32.36 0.24 -5.62 16 9 H 0.44 3.58 8.96 -182.77 -1.64 1.94 16 10 C 0.13 1.50 7.34 -84.18 -0.62 0.89 16 11 C -0.14 -1.31 10.03 -39.79 -0.40 -1.71 16 12 C -0.07 -0.57 9.96 -39.90 -0.40 -0.97 16 13 C -0.16 -1.41 9.97 -39.95 -0.40 -1.80 16 14 C -0.04 -0.37 10.07 -39.59 -0.40 -0.77 16 15 C -0.16 -2.05 6.33 -105.21 -0.67 -2.71 16 16 C 0.15 2.58 2.48 -67.89 -0.17 2.41 16 17 C -0.14 -2.36 5.31 -26.61 -0.14 -2.50 16 18 C 0.15 3.10 6.51 -3.71 -0.02 3.07 16 19 N -0.59 -14.76 3.00 -172.29 -0.52 -15.28 16 20 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 21 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 22 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 23 N -0.90 -26.29 11.20 55.49 0.62 -25.67 16 24 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.17 4.17 5.30 -3.69 -0.02 4.15 16 29 C -0.14 -2.78 5.34 -26.61 -0.14 -2.92 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16 32 H 0.08 0.82 6.45 -51.93 -0.34 0.49 16 33 H 0.12 0.85 7.40 -51.92 -0.38 0.46 16 34 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.09 1.94 6.90 -51.93 -0.36 1.59 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -35.23 385.90 -10.88 -46.10 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.30 Total: 1.09 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -3.74 Total: -0.61 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.30 Total: -58.56 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.23 -10.88 -46.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006438021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.529 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds