Wall clock time and date at job start Wed Apr 1 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36122 * 126.30542 * 2 1 4 4 N 1.30083 * 110.03956 * 180.02562 * 3 2 1 5 5 C 1.35858 * 109.53734 * 359.97438 * 4 3 2 6 6 C 1.39714 * 133.51087 * 180.02562 * 5 4 3 7 7 C 1.37842 * 120.10829 * 180.02562 * 6 5 4 8 8 C 1.38323 * 120.72522 * 359.97438 * 7 6 5 9 9 C 1.39393 * 120.28370 * 0.02562 * 8 7 6 10 10 C 1.47530 * 120.24945 * 179.97438 * 9 8 7 11 11 O 1.21597 * 119.99855 * 187.21198 * 10 9 8 12 12 N 1.34778 * 120.00371 * 7.20739 * 10 9 8 13 13 C 1.46489 * 120.00077 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46952 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.69863 * 56.33470 * 14 13 12 16 16 C 1.53623 * 109.66469 * 176.92558 * 14 13 12 17 17 C 1.53038 * 109.24296 * 174.54813 * 16 14 13 18 18 C 1.53043 * 109.53975 * 298.51317 * 17 16 14 19 19 C 1.53190 * 109.31347 * 61.36134 * 18 17 16 20 20 N 1.46922 * 109.58564 * 295.97734 * 14 13 12 21 21 C 1.36933 * 120.63453 * 6.62877 * 20 14 13 22 22 H 1.08005 * 119.99704 * 328.35701 * 21 20 14 23 23 C 1.38814 * 120.00525 * 148.62858 * 21 20 14 24 24 N 1.31616 * 119.99552 * 345.28313 * 23 21 20 25 25 Si 1.86802 * 120.00128 * 165.28221 * 23 21 20 26 26 H 1.48496 * 109.47008 * 90.00071 * 25 23 21 27 27 H 1.48499 * 109.46783 * 209.99985 * 25 23 21 28 28 H 1.48503 * 109.46885 * 329.99847 * 25 23 21 29 29 C 1.37507 * 126.31228 * 180.29604 * 2 1 3 30 30 H 1.09002 * 109.47019 * 111.18563 * 1 2 3 31 31 H 1.08997 * 109.46996 * 231.18162 * 1 2 3 32 32 H 1.08997 * 109.47435 * 351.18348 * 1 2 3 33 33 H 1.07995 * 124.98077 * 0.03252 * 3 2 1 34 34 H 1.08010 * 119.95125 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.63524 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.85820 * 179.97438 * 8 7 6 37 37 H 0.97003 * 119.99074 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47678 * 60.00729 * 13 12 10 39 39 H 1.09003 * 109.47485 * 299.99699 * 13 12 10 40 40 H 1.09005 * 109.63690 * 54.56059 * 16 14 13 41 41 H 1.09002 * 109.45960 * 294.43090 * 16 14 13 42 42 H 1.09000 * 109.46143 * 178.49018 * 17 16 14 43 43 H 1.09004 * 109.44926 * 58.52711 * 17 16 14 44 44 H 1.08998 * 109.49625 * 301.41242 * 18 17 16 45 45 H 1.08998 * 109.52483 * 181.33310 * 18 17 16 46 46 H 1.08994 * 109.58902 * 185.57667 * 19 18 17 47 47 H 1.09004 * 109.70103 * 65.22416 * 19 18 17 48 48 H 0.97008 * 119.99930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.0970 0.0000 4 7 3.5198 0.7326 -0.0005 5 6 3.5973 -0.6238 -0.0004 6 6 4.6638 -1.5263 -0.0003 7 6 4.4213 -2.8832 -0.0006 8 6 3.1265 -3.3698 -0.0005 9 6 2.0451 -2.4902 -0.0006 10 6 0.6644 -3.0100 -0.0010 11 8 -0.2726 -2.2464 -0.1333 12 7 0.4415 -4.3312 0.1451 13 6 -0.9294 -4.8472 0.1440 14 6 -0.9027 -6.3663 0.3255 15 1 -0.3665 -6.6176 1.2406 16 6 -2.3400 -6.9032 0.4021 17 6 -2.3054 -8.4325 0.4465 18 6 -1.6595 -8.9672 -0.8338 19 6 -0.2193 -8.4536 -0.9274 20 7 -0.2324 -6.9879 -0.8247 21 6 0.3736 -6.2163 -1.7799 22 1 -0.0209 -5.2386 -2.0144 23 6 1.4915 -6.6929 -2.4508 24 7 2.1419 -7.7384 -1.9859 25 14 2.0727 -5.8503 -4.0134 26 1 3.0435 -4.7811 -3.6675 27 1 2.7281 -6.8465 -4.8984 28 1 0.9087 -5.2536 -4.7164 29 6 2.2793 -1.1080 -0.0057 30 1 -0.3633 -0.3714 -0.9582 31 1 -0.3633 -0.6442 0.8007 32 1 -0.3634 1.0155 0.1575 33 1 1.9245 2.1198 0.0005 34 1 5.6800 -1.1602 -0.0008 35 1 5.2515 -3.5741 -0.0001 36 1 2.9526 -4.4357 -0.0012 37 1 1.1891 -4.9402 0.2509 38 1 -1.4091 -4.6027 -0.8037 39 1 -1.4890 -4.3938 0.9622 40 1 -2.9000 -6.5772 -0.4744 41 1 -2.8217 -6.5239 1.3034 42 1 -3.3223 -8.8165 0.5279 43 1 -1.7243 -8.7576 1.3095 44 1 -2.2258 -8.6219 -1.6987 45 1 -1.6564 -10.0570 -0.8125 46 1 0.2126 -8.7491 -1.8834 47 1 0.3735 -8.8716 -0.1138 48 1 2.9233 -8.0713 -2.4545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024514939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:27 Heat of formation + Delta-G solvation = 71.735708 kcal Electronic energy + Delta-G solvation = -31045.796779 eV Core-core repulsion = 27102.402312 eV Total energy + Delta-G solvation = -3943.394467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.08323 -39.32945 -37.78267 -36.95728 -34.41194 -33.73732 -33.11440 -31.33550 -30.20642 -29.91623 -29.18949 -26.80947 -26.05220 -24.94370 -23.54567 -22.20653 -21.98421 -21.56591 -20.64444 -19.57995 -19.07513 -17.47825 -17.12566 -16.55648 -16.21007 -15.88640 -15.51936 -15.27519 -15.01473 -14.42783 -14.14815 -13.99081 -13.78917 -13.69223 -13.48237 -13.32873 -13.00550 -12.89491 -12.50498 -12.36957 -12.04251 -11.85841 -11.74736 -11.49081 -11.29654 -11.16279 -10.98422 -10.78093 -10.59764 -10.35078 -10.25104 -10.20470 -10.17900 -10.04238 -9.58062 -9.44570 -9.12570 -8.61738 -8.34932 -8.26084 -7.90223 -6.71247 -5.89278 -3.35684 0.78084 1.63673 2.63740 2.82122 3.31239 3.39484 3.42248 3.43355 3.72611 4.12861 4.31682 4.40090 4.65550 4.96556 5.08422 5.14580 5.18667 5.27401 5.38960 5.44539 5.51510 5.57018 5.60147 5.63641 5.68608 5.85907 5.91792 5.97506 6.00894 6.07773 6.22136 6.26658 6.31128 6.36236 6.47833 6.54277 6.56593 6.62025 6.65835 6.68652 6.80596 6.90484 6.91907 7.09389 7.23858 7.32723 7.59366 7.74654 7.91486 8.12490 8.35541 8.72511 9.11361 9.72802 10.31148 11.17393 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.004087 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.859289 B = 6849.786410 C = 8082.171292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.480 5.480 3 C 0.248 3.752 4 N -0.499 5.499 5 C 0.028 3.972 6 C -0.044 4.044 7 C -0.136 4.136 8 C -0.055 4.055 9 C -0.123 4.123 10 C 0.552 3.448 11 O -0.568 6.568 12 N -0.683 5.683 13 C 0.135 3.865 14 C 0.160 3.840 15 H 0.032 0.968 16 C -0.126 4.126 17 C -0.107 4.107 18 C -0.144 4.144 19 C 0.174 3.826 20 N -0.588 5.588 21 C -0.252 4.252 22 H 0.067 0.933 23 C 0.013 3.987 24 N -0.897 5.897 25 Si 0.887 3.113 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.281 1.281 29 C 0.097 3.903 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.212 0.788 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.412 0.588 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.083 0.917 47 H 0.019 0.981 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 8.400 6.635 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.168 5.168 3 C -0.038 4.038 4 N -0.219 5.219 5 C -0.090 4.090 6 C -0.064 4.064 7 C -0.157 4.157 8 C -0.075 4.075 9 C -0.129 4.129 10 C 0.340 3.660 11 O -0.452 6.452 12 N -0.332 5.332 13 C 0.012 3.988 14 C 0.053 3.947 15 H 0.049 0.951 16 C -0.166 4.166 17 C -0.145 4.145 18 C -0.183 4.183 19 C 0.048 3.952 20 N -0.312 5.312 21 C -0.382 4.382 22 H 0.085 0.915 23 C -0.187 4.187 24 N -0.541 5.541 25 Si 0.716 3.284 26 H -0.209 1.209 27 H -0.215 1.215 28 H -0.206 1.206 29 C -0.016 4.016 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.228 0.772 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.251 0.749 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.037 0.963 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.228 9.343 6.474 11.583 hybrid contribution -0.061 -0.473 -1.018 1.124 sum -2.288 8.870 5.455 10.661 Atomic orbital electron populations 1.22359 0.74387 1.01182 1.06426 1.45275 1.08387 1.04923 1.58186 1.25310 0.85325 0.93429 0.99716 1.70453 1.18391 1.10626 1.22414 1.18997 0.91915 0.90334 1.07759 1.20397 0.97313 0.91440 0.97216 1.20867 0.97008 0.94646 1.03154 1.21385 0.91501 0.99878 0.94747 1.18923 0.94193 0.89641 1.10142 1.18160 0.88317 0.82685 0.76849 1.90724 1.45350 1.56033 1.53120 1.45903 1.10319 1.06770 1.70235 1.21318 0.82599 0.93780 1.01151 1.20825 0.92245 0.89998 0.91673 0.95051 1.22007 0.98020 0.96052 1.00557 1.21361 0.99073 0.95510 0.98557 1.22189 1.00843 0.98463 0.96834 1.20745 0.90078 0.82827 1.01524 1.44083 1.63383 1.01586 1.22121 1.19116 1.05674 1.00704 1.12701 0.91520 1.25022 0.95858 0.98252 0.99547 1.70005 1.19197 1.26070 1.38835 0.86533 0.78836 0.78942 0.84052 1.20920 1.21519 1.20629 1.18611 0.91021 0.88328 1.03617 0.89640 0.88218 0.91834 0.77208 0.85201 0.84672 0.83885 0.74937 0.91241 0.92611 0.92085 0.93117 0.93724 0.92874 0.92838 0.93524 0.89864 0.96317 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.25 9.09 59.85 0.54 1.79 16 2 N -0.48 -7.08 3.19 -122.94 -0.39 -7.47 16 3 C 0.25 3.20 12.47 -89.73 -1.12 2.08 16 4 N -0.50 -7.86 11.28 -12.05 -0.14 -7.99 16 5 C 0.03 0.47 7.22 -84.71 -0.61 -0.14 16 6 C -0.04 -0.64 10.09 -39.18 -0.40 -1.04 16 7 C -0.14 -1.96 9.99 -39.69 -0.40 -2.36 16 8 C -0.05 -0.89 9.51 -39.12 -0.37 -1.27 16 9 C -0.12 -2.16 5.88 -104.95 -0.62 -2.78 16 10 C 0.55 10.16 7.75 -12.47 -0.10 10.06 16 11 O -0.57 -10.72 10.77 5.28 0.06 -10.66 16 12 N -0.68 -12.46 3.98 -61.35 -0.24 -12.71 16 13 C 0.14 2.41 4.42 -4.05 -0.02 2.39 16 14 C 0.16 2.93 2.98 -67.37 -0.20 2.73 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 16 C -0.13 -2.03 5.40 -26.39 -0.14 -2.17 16 17 C -0.11 -1.69 5.88 -26.69 -0.16 -1.85 16 18 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 19 C 0.17 3.78 5.27 -3.71 -0.02 3.76 16 20 N -0.59 -12.88 2.97 -164.52 -0.49 -13.37 16 21 C -0.25 -6.09 7.22 -15.06 -0.11 -6.20 16 22 H 0.07 1.68 5.91 -52.48 -0.31 1.37 16 23 C 0.01 0.32 4.95 -17.43 -0.09 0.24 16 24 N -0.90 -23.49 11.28 55.49 0.63 -22.86 16 25 Si 0.89 20.89 29.58 -169.99 -5.03 15.87 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.10 1.66 6.78 -83.77 -0.57 1.10 16 30 H 0.09 1.25 7.04 -51.93 -0.37 0.88 16 31 H 0.10 1.43 6.22 -51.93 -0.32 1.11 16 32 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.21 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.14 2.36 6.46 -52.48 -0.34 2.02 16 37 H 0.41 7.78 5.80 -40.82 -0.24 7.54 16 38 H 0.07 1.37 7.18 -51.93 -0.37 1.00 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 2.06 6.22 -51.93 -0.32 1.74 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -29.09 374.02 -11.39 -40.49 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.90 Total: 9.46 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -4.53 Total: 3.61 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.64 Total: -64.39 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.09 -11.39 -40.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024514939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.223 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds