Wall clock time and date at job start Wed Apr 1 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99963 * 2 1 4 4 C 1.53005 * 109.47290 * 204.67317 * 3 2 1 5 5 N 1.46505 * 109.46918 * 294.03564 * 4 3 2 6 6 C 1.34269 * 119.37915 * 276.16928 * 5 4 3 7 7 O 1.21277 * 118.96996 * 2.24767 * 6 5 4 8 8 C 1.50282 * 122.05469 * 181.96658 * 6 5 4 9 9 O 1.42808 * 110.49937 * 341.61153 * 8 6 5 10 10 C 1.43381 * 113.34407 * 51.29449 * 9 8 6 11 11 C 1.45921 * 119.37960 * 96.14316 * 5 4 3 12 12 C 1.53504 * 113.74948 * 295.64570 * 11 5 4 13 13 N 1.48040 * 86.04840 * 91.14863 * 12 11 5 14 14 C 1.46901 * 110.99999 * 137.29268 * 13 12 11 15 15 C 1.53006 * 109.46802 * 90.55992 * 14 13 12 16 16 C 1.52999 * 109.46566 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46863 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99898 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99641 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00495 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99553 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46915 * 90.00405 * 21 19 17 23 23 H 1.48502 * 109.47442 * 209.99847 * 21 19 17 24 24 H 1.48497 * 109.47537 * 330.00335 * 21 19 17 25 25 C 1.48041 * 90.83014 * 24.36748 * 13 12 11 26 26 O 1.42895 * 109.47304 * 84.66889 * 3 2 1 27 27 C 1.42894 * 114.00251 * 285.39067 * 26 3 2 28 28 H 1.08995 * 109.46993 * 304.60984 * 1 2 3 29 29 H 1.09005 * 109.47261 * 64.61135 * 1 2 3 30 30 H 1.09006 * 109.47027 * 184.60571 * 1 2 3 31 31 H 1.09002 * 109.47504 * 324.66764 * 3 2 1 32 32 H 1.08994 * 109.47140 * 174.03971 * 4 3 2 33 33 H 1.09000 * 109.47083 * 54.03115 * 4 3 2 34 34 H 1.08995 * 109.26857 * 101.87723 * 8 6 5 35 35 H 1.09006 * 109.26684 * 221.35430 * 8 6 5 36 36 H 1.08999 * 109.70516 * 54.05917 * 10 9 8 37 37 H 1.09007 * 109.71051 * 174.63657 * 10 9 8 38 38 H 1.09003 * 113.77558 * 205.42998 * 12 11 5 39 39 H 1.08994 * 113.78221 * 336.86219 * 12 11 5 40 40 H 1.08995 * 109.46420 * 210.55369 * 14 13 12 41 41 H 1.08999 * 109.47000 * 330.55898 * 14 13 12 42 42 H 1.08994 * 109.47092 * 299.99733 * 15 14 13 43 43 H 1.09001 * 109.47046 * 59.99780 * 15 14 13 44 44 H 1.09004 * 109.47195 * 299.99832 * 16 15 14 45 45 H 1.08999 * 109.47722 * 59.99640 * 16 15 14 46 46 H 0.96997 * 120.00316 * 180.02562 * 20 19 17 47 47 H 1.09004 * 113.77693 * 221.33834 * 25 13 12 48 48 H 1.09007 * 113.77802 * 89.91500 * 25 13 12 49 49 H 1.09000 * 109.47815 * 192.93451 * 27 26 3 50 50 H 1.08996 * 109.47236 * 312.94195 * 27 26 3 51 51 H 1.09011 * 109.46783 * 72.93874 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4152 1.2382 -0.6022 5 7 4.2846 0.4487 0.2737 6 6 4.8735 1.0411 1.3249 7 8 4.6381 2.2096 1.5486 8 6 5.8103 0.2997 2.2367 9 8 5.6351 -1.1104 2.0943 10 6 5.6907 -1.5553 0.7324 11 6 4.4938 -0.9668 -0.0125 12 6 3.2208 -1.8163 0.1064 13 7 3.0246 -1.5395 -1.3346 14 6 2.5966 -2.7494 -2.0495 15 6 1.0683 -2.8235 -2.0570 16 6 0.6226 -4.0833 -2.8021 17 6 -0.8826 -4.1561 -2.8100 18 1 -1.4632 -3.3816 -2.3311 19 6 -1.5185 -5.2115 -3.4287 20 7 -0.8115 -6.1550 -4.0115 21 14 -3.3842 -5.3021 -3.4379 22 1 -3.9077 -4.6053 -4.6403 23 1 -3.8107 -6.7243 -3.4652 24 1 -3.9176 -4.6488 -2.2157 25 6 4.4759 -1.3054 -1.5093 26 8 2.0896 1.7915 1.3414 27 6 0.8345 2.2049 1.8851 28 1 -0.3633 0.5837 0.8458 29 1 -0.3634 0.4406 -0.9284 30 1 -0.3633 -1.0244 0.0825 31 1 1.3921 1.9784 -0.5943 32 1 3.8172 2.2466 -0.6999 33 1 3.3672 0.7693 -1.5850 34 1 6.8382 0.5616 1.9863 35 1 5.6081 0.5849 3.2691 36 1 6.6163 -1.2111 0.2709 37 1 5.6461 -2.6439 0.6991 38 1 3.4121 -2.8658 0.3303 39 1 2.4566 -1.3757 0.7466 40 1 2.9636 -2.7141 -3.0752 41 1 3.0007 -3.6293 -1.5489 42 1 0.7013 -2.8587 -1.0313 43 1 0.6643 -1.9436 -2.5575 44 1 0.9897 -4.0477 -3.8279 45 1 1.0267 -4.9635 -2.3020 46 1 -1.2588 -6.8973 -4.4471 47 1 4.7099 -0.4585 -2.1544 48 1 5.0385 -2.2038 -1.7635 49 1 1.0036 2.7669 2.8036 50 1 0.3160 2.8359 1.1633 51 1 0.2262 1.3270 2.1032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:43 Heat of formation + Delta-G solvation = -103.931616 kcal Electronic energy + Delta-G solvation = -33291.267708 eV Core-core repulsion = 29000.654063 eV Total energy + Delta-G solvation = -4290.613645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53937 -39.08603 -38.91780 -37.52071 -35.72735 -35.04399 -33.74304 -31.94507 -30.36713 -29.70065 -27.81490 -27.10284 -26.34334 -25.87946 -25.67721 -24.41866 -22.41592 -22.07760 -20.78937 -19.97935 -18.62398 -17.87718 -17.18389 -17.07161 -16.71358 -16.33671 -16.14661 -15.72890 -15.52790 -15.07755 -14.90189 -14.63367 -14.41988 -14.28967 -14.09425 -13.74906 -13.47703 -13.34775 -13.22577 -12.83196 -12.57342 -12.39816 -12.26969 -12.17496 -11.86133 -11.68573 -11.63214 -11.24411 -11.10358 -11.05658 -10.89885 -10.75953 -10.54215 -10.48872 -10.45542 -9.79067 -9.57927 -9.55513 -9.45965 -9.21156 -9.02845 -8.72912 -8.39352 -8.33574 -5.99364 -4.01013 2.48526 2.67451 3.31073 3.37517 3.40446 3.44875 3.68465 3.91641 4.01528 4.17257 4.41789 4.46365 4.50363 4.80446 4.81158 5.01221 5.02649 5.12031 5.14913 5.21812 5.27375 5.31020 5.36567 5.40422 5.42555 5.44487 5.46985 5.54872 5.60451 5.69093 5.70305 5.77271 5.93865 6.01105 6.26694 6.35487 6.41916 6.56555 6.63695 6.81366 6.92267 7.15137 7.21917 7.24798 7.35543 7.43335 7.70327 7.86556 8.01961 8.06882 8.45467 9.06293 9.62803 11.12120 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.003233 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.628107 B = 8658.774004 C = 9902.643236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.349 6.349 3 C 0.225 3.775 4 C 0.138 3.862 5 N -0.565 5.565 6 C 0.492 3.508 7 O -0.522 6.522 8 C 0.050 3.950 9 O -0.366 6.366 10 C 0.062 3.938 11 C 0.106 3.894 12 C 0.009 3.991 13 N -0.452 5.452 14 C 0.023 3.977 15 C -0.090 4.090 16 C 0.020 3.980 17 C -0.515 4.515 18 H 0.053 0.947 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.010 4.010 26 O -0.373 6.373 27 C 0.025 3.975 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.013 0.987 45 H 0.012 0.988 46 H 0.260 0.740 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.037 0.963 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.545 14.571 9.915 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.268 6.268 3 C 0.128 3.872 4 C 0.015 3.985 5 N -0.297 5.297 6 C 0.279 3.721 7 O -0.398 6.398 8 C -0.029 4.029 9 O -0.284 6.284 10 C -0.015 4.015 11 C 0.018 3.982 12 C -0.120 4.120 13 N -0.174 5.174 14 C -0.105 4.105 15 C -0.129 4.129 16 C -0.017 4.017 17 C -0.554 4.554 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.140 4.140 26 O -0.293 6.293 27 C -0.071 4.071 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.108 0.892 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.055 0.945 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.181 15.243 9.977 22.486 hybrid contribution -1.180 -0.623 -0.363 1.383 sum 12.001 14.619 9.615 21.218 Atomic orbital electron populations 1.23088 0.82201 1.03575 0.99407 1.88388 1.18543 1.26564 1.93309 1.23699 0.95394 0.84173 0.83889 1.21576 0.85913 0.96684 0.94326 1.46938 1.46662 1.08323 1.27789 1.20939 0.81611 0.88089 0.81438 1.90735 1.61519 1.16675 1.70852 1.22747 0.98111 0.80926 1.01149 1.88171 1.93478 1.21034 1.25697 1.23039 0.95785 1.00790 0.81903 1.22350 0.97064 0.82394 0.96391 1.24575 0.96772 0.97685 0.93012 1.68733 1.12030 1.32867 1.03777 1.22805 0.99470 0.90111 0.98131 1.21431 0.90976 1.00173 1.00270 1.19099 0.95829 0.91691 0.95111 1.21234 0.92027 1.07365 1.34723 0.92828 1.25020 0.98097 0.95804 0.95576 1.69960 1.35168 1.11671 1.36848 0.86635 0.86083 0.77143 0.78367 1.20729 1.21270 1.19930 1.24352 0.93495 1.01738 0.94421 1.88209 1.29306 1.81656 1.30167 1.22920 0.86769 0.98605 0.98823 0.94361 0.94091 0.89131 0.92832 0.89217 0.86564 0.89867 0.85519 0.91804 0.86629 0.91198 0.86232 0.91763 0.94595 0.93612 0.93039 0.96890 0.96995 0.93083 0.89248 0.90272 0.90239 0.94469 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.66 101.05 1.08 1.25 16 2 O -0.35 -4.76 5.14 -59.04 -0.30 -5.07 16 3 C 0.23 2.85 3.16 37.16 0.12 2.97 16 4 C 0.14 1.62 5.00 -4.04 -0.02 1.60 16 5 N -0.56 -6.68 2.62 -162.12 -0.42 -7.10 16 6 C 0.49 6.22 7.00 -11.42 -0.08 6.14 16 7 O -0.52 -8.13 15.04 -14.71 -0.22 -8.35 16 8 C 0.05 0.49 6.94 35.80 0.25 0.74 16 9 O -0.37 -3.87 10.84 -35.23 -0.38 -4.25 16 10 C 0.06 0.55 6.09 37.04 0.23 0.78 16 11 C 0.11 1.12 1.56 -135.16 -0.21 0.91 16 12 C 0.01 0.11 6.26 -2.94 -0.02 0.09 16 13 N -0.45 -6.00 3.60 -240.33 -0.86 -6.87 16 14 C 0.02 0.37 4.80 -3.82 -0.02 0.35 16 15 C -0.09 -1.81 5.46 -26.73 -0.15 -1.96 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.01 -0.10 6.50 -2.96 -0.02 -0.12 16 26 O -0.37 -5.22 8.19 -66.38 -0.54 -5.77 16 27 C 0.03 0.28 9.98 101.05 1.01 1.29 16 28 H 0.04 0.43 4.66 -51.93 -0.24 0.19 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.05 0.63 7.60 -51.93 -0.39 0.23 16 32 H 0.09 1.04 7.56 -51.93 -0.39 0.65 16 33 H 0.12 1.32 5.38 -51.93 -0.28 1.04 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 37 H 0.12 0.88 7.86 -51.93 -0.41 0.47 16 38 H 0.07 0.89 7.23 -51.93 -0.38 0.51 16 39 H 0.12 1.82 5.47 -51.93 -0.28 1.53 16 40 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 41 H 0.04 0.58 7.38 -51.93 -0.38 0.19 16 42 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.09 0.86 7.03 -51.93 -0.36 0.50 16 48 H 0.08 0.72 7.87 -51.93 -0.41 0.32 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.04 0.36 7.86 -51.93 -0.41 -0.05 16 51 H 0.05 0.51 5.85 -51.92 -0.30 0.20 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -33.23 389.77 -7.97 -41.19 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.43 Total: -1.24 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 1.61 Total: 1.15 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.55 Total: -40.10 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.45 Total: -23.44 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.23 -7.97 -41.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.738 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds