Wall clock time and date at job start Wed Apr 1 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99963 * 2 1 4 4 C 1.53005 * 109.47290 * 204.67317 * 3 2 1 5 5 N 1.46505 * 109.46918 * 294.03564 * 4 3 2 6 6 C 1.34269 * 119.37915 * 276.16928 * 5 4 3 7 7 O 1.21277 * 118.96996 * 2.24767 * 6 5 4 8 8 C 1.50282 * 122.05469 * 181.96658 * 6 5 4 9 9 O 1.42808 * 110.49937 * 341.61153 * 8 6 5 10 10 C 1.43381 * 113.34407 * 51.29449 * 9 8 6 11 11 C 1.45921 * 119.37960 * 96.14316 * 5 4 3 12 12 C 1.53504 * 113.74948 * 295.64570 * 11 5 4 13 13 N 1.48040 * 86.04840 * 91.14863 * 12 11 5 14 14 C 1.46901 * 110.99999 * 137.29268 * 13 12 11 15 15 C 1.53006 * 109.46802 * 90.55992 * 14 13 12 16 16 C 1.52999 * 109.46566 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46863 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99898 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99641 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00495 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99553 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46915 * 90.00405 * 21 19 17 23 23 H 1.48502 * 109.47442 * 209.99847 * 21 19 17 24 24 H 1.48497 * 109.47537 * 330.00335 * 21 19 17 25 25 C 1.48041 * 90.83014 * 24.36748 * 13 12 11 26 26 O 1.42895 * 109.47304 * 84.66889 * 3 2 1 27 27 C 1.42894 * 114.00251 * 285.39067 * 26 3 2 28 28 H 1.08995 * 109.46993 * 304.60984 * 1 2 3 29 29 H 1.09005 * 109.47261 * 64.61135 * 1 2 3 30 30 H 1.09006 * 109.47027 * 184.60571 * 1 2 3 31 31 H 1.09002 * 109.47504 * 324.66764 * 3 2 1 32 32 H 1.08994 * 109.47140 * 174.03971 * 4 3 2 33 33 H 1.09000 * 109.47083 * 54.03115 * 4 3 2 34 34 H 1.08995 * 109.26857 * 101.87723 * 8 6 5 35 35 H 1.09006 * 109.26684 * 221.35430 * 8 6 5 36 36 H 1.08999 * 109.70516 * 54.05917 * 10 9 8 37 37 H 1.09007 * 109.71051 * 174.63657 * 10 9 8 38 38 H 1.09003 * 113.77558 * 205.42998 * 12 11 5 39 39 H 1.08994 * 113.78221 * 336.86219 * 12 11 5 40 40 H 1.08995 * 109.46420 * 210.55369 * 14 13 12 41 41 H 1.08999 * 109.47000 * 330.55898 * 14 13 12 42 42 H 1.08994 * 109.47092 * 299.99733 * 15 14 13 43 43 H 1.09001 * 109.47046 * 59.99780 * 15 14 13 44 44 H 1.09004 * 109.47195 * 299.99832 * 16 15 14 45 45 H 1.08999 * 109.47722 * 59.99640 * 16 15 14 46 46 H 0.96997 * 120.00316 * 180.02562 * 20 19 17 47 47 H 1.09004 * 113.77693 * 221.33834 * 25 13 12 48 48 H 1.09007 * 113.77802 * 89.91500 * 25 13 12 49 49 H 1.09000 * 109.47815 * 192.93451 * 27 26 3 50 50 H 1.08996 * 109.47236 * 312.94195 * 27 26 3 51 51 H 1.09011 * 109.46783 * 72.93874 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4152 1.2382 -0.6022 5 7 4.2846 0.4487 0.2737 6 6 4.8735 1.0411 1.3249 7 8 4.6381 2.2096 1.5486 8 6 5.8103 0.2997 2.2367 9 8 5.6351 -1.1104 2.0943 10 6 5.6907 -1.5553 0.7324 11 6 4.4938 -0.9668 -0.0125 12 6 3.2208 -1.8163 0.1064 13 7 3.0246 -1.5395 -1.3346 14 6 2.5966 -2.7494 -2.0495 15 6 1.0683 -2.8235 -2.0570 16 6 0.6226 -4.0833 -2.8021 17 6 -0.8826 -4.1561 -2.8100 18 1 -1.4632 -3.3816 -2.3311 19 6 -1.5185 -5.2115 -3.4287 20 7 -0.8115 -6.1550 -4.0115 21 14 -3.3842 -5.3021 -3.4379 22 1 -3.9077 -4.6053 -4.6403 23 1 -3.8107 -6.7243 -3.4652 24 1 -3.9176 -4.6488 -2.2157 25 6 4.4759 -1.3054 -1.5093 26 8 2.0896 1.7915 1.3414 27 6 0.8345 2.2049 1.8851 28 1 -0.3633 0.5837 0.8458 29 1 -0.3634 0.4406 -0.9284 30 1 -0.3633 -1.0244 0.0825 31 1 1.3921 1.9784 -0.5943 32 1 3.8172 2.2466 -0.6999 33 1 3.3672 0.7693 -1.5850 34 1 6.8382 0.5616 1.9863 35 1 5.6081 0.5849 3.2691 36 1 6.6163 -1.2111 0.2709 37 1 5.6461 -2.6439 0.6991 38 1 3.4121 -2.8658 0.3303 39 1 2.4566 -1.3757 0.7466 40 1 2.9636 -2.7141 -3.0752 41 1 3.0007 -3.6293 -1.5489 42 1 0.7013 -2.8587 -1.0313 43 1 0.6643 -1.9436 -2.5575 44 1 0.9897 -4.0477 -3.8279 45 1 1.0267 -4.9635 -2.3020 46 1 -1.2588 -6.8973 -4.4471 47 1 4.7099 -0.4585 -2.1544 48 1 5.0385 -2.2038 -1.7635 49 1 1.0036 2.7669 2.8036 50 1 0.3160 2.8359 1.1633 51 1 0.2262 1.3270 2.1032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:42 Heat of formation + Delta-G solvation = -126.397048 kcal Electronic energy + Delta-G solvation = -33292.241882 eV Core-core repulsion = 29000.654063 eV Total energy + Delta-G solvation = -4291.587819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.45593 -40.09231 -39.88261 -38.38033 -36.74510 -36.39442 -35.34907 -33.67849 -31.46350 -30.68810 -29.01998 -28.25591 -27.30963 -26.85877 -26.70752 -25.88016 -23.61103 -23.25856 -21.89705 -21.56134 -19.48533 -18.78325 -18.43592 -18.11966 -18.01500 -17.61980 -17.07417 -16.74512 -16.58028 -16.35987 -16.26291 -15.79795 -15.59914 -15.25980 -15.11850 -14.78932 -14.69335 -14.38987 -14.34730 -14.14501 -13.87512 -13.63803 -13.43909 -13.19242 -13.12822 -12.93941 -12.71457 -12.66411 -12.56541 -12.31947 -12.15729 -12.11346 -12.02484 -11.77085 -11.39869 -11.31743 -11.26803 -11.01517 -10.73110 -10.56221 -10.52950 -10.25903 -9.69533 -9.43492 -8.18529 -6.28440 1.39381 1.40200 1.51119 1.55082 1.81096 2.41112 2.69165 2.75741 2.96582 3.05665 3.14738 3.34155 3.56343 3.66611 3.85698 4.01396 4.13712 4.19255 4.22255 4.25991 4.34805 4.38401 4.41200 4.50640 4.54106 4.55162 4.57212 4.59459 4.60942 4.68822 4.77713 4.83650 4.86076 4.88278 4.97510 4.99056 5.17473 5.30246 5.34311 5.45058 5.57080 5.63726 5.84134 5.87070 5.91356 6.18459 6.21398 6.25407 6.32734 6.49846 6.88720 7.14028 7.40363 8.93239 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.003233 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.628107 B = 8658.774004 C = 9902.643236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.359 6.359 3 C 0.222 3.778 4 C 0.138 3.862 5 N -0.565 5.565 6 C 0.486 3.514 7 O -0.557 6.557 8 C 0.054 3.946 9 O -0.379 6.379 10 C 0.062 3.938 11 C 0.113 3.887 12 C 0.005 3.995 13 N -0.460 5.460 14 C 0.036 3.964 15 C -0.071 4.071 16 C 0.025 3.975 17 C -0.537 4.537 18 H 0.056 0.944 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.960 3.040 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.265 1.265 25 C -0.001 4.001 26 O -0.395 6.395 27 C 0.022 3.978 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.044 0.956 44 H -0.010 1.010 45 H -0.012 1.012 46 H 0.263 0.737 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.086 0.914 50 H 0.050 0.950 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.299 15.150 10.213 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.278 6.278 3 C 0.126 3.874 4 C 0.015 3.985 5 N -0.296 5.296 6 C 0.275 3.725 7 O -0.436 6.436 8 C -0.026 4.026 9 O -0.297 6.297 10 C -0.015 4.015 11 C 0.026 3.974 12 C -0.124 4.124 13 N -0.182 5.182 14 C -0.093 4.093 15 C -0.109 4.109 16 C -0.012 4.012 17 C -0.575 4.575 18 H 0.074 0.926 19 C -0.197 4.197 20 N -0.574 5.574 21 Si 0.785 3.215 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.189 1.189 25 C -0.131 4.131 26 O -0.315 6.315 27 C -0.074 4.074 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.148 0.852 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.008 0.992 45 H 0.006 0.994 46 H 0.071 0.929 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.105 0.895 50 H 0.069 0.931 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.941 15.821 10.278 23.458 hybrid contribution -1.421 -0.793 -0.446 1.687 sum 12.520 15.027 9.832 21.891 Atomic orbital electron populations 1.23043 0.82166 1.02730 1.00130 1.88387 1.18736 1.27311 1.93399 1.23835 0.96001 0.83893 0.83719 1.21583 0.85607 0.96877 0.94456 1.47026 1.46221 1.08735 1.27618 1.21519 0.81597 0.87878 0.81516 1.90715 1.62879 1.18267 1.71721 1.22813 0.98730 0.80325 1.00691 1.88166 1.93576 1.21245 1.26697 1.23206 0.95725 1.01544 0.81035 1.22332 0.96763 0.81397 0.96927 1.24523 0.97521 0.98177 0.92210 1.68665 1.14696 1.30988 1.03825 1.22535 0.96338 0.91633 0.98747 1.21117 0.94135 0.96965 0.98655 1.19000 0.94782 0.93290 0.94142 1.21671 0.93540 1.07570 1.34715 0.92579 1.25929 1.03362 0.95369 0.95064 1.70086 1.37329 1.12334 1.37637 0.85528 0.79784 0.77353 0.78878 1.19826 1.20786 1.18883 1.24418 0.91272 1.02976 0.94402 1.88184 1.30745 1.81833 1.30754 1.23022 0.86039 0.98845 0.99460 0.92901 0.93953 0.90856 0.91973 0.89239 0.86114 0.87016 0.85067 0.89141 0.85244 0.90933 0.88556 0.91664 0.94525 0.94280 0.93689 0.99177 0.99351 0.92861 0.88074 0.88241 0.89536 0.93118 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.66 113.37 1.21 1.61 16 2 O -0.36 -9.76 5.14 -126.21 -0.65 -10.41 16 3 C 0.22 5.51 3.16 71.98 0.23 5.74 16 4 C 0.14 3.11 5.00 86.38 0.43 3.54 16 5 N -0.56 -12.51 2.62 -785.49 -2.06 -14.57 16 6 C 0.49 11.63 7.00 87.61 0.61 12.25 16 7 O -0.56 -17.01 15.04 16.36 0.25 -16.76 16 8 C 0.05 0.93 6.94 71.10 0.49 1.42 16 9 O -0.38 -7.07 10.84 -148.98 -1.61 -8.68 16 10 C 0.06 0.90 6.09 71.90 0.44 1.34 16 11 C 0.11 2.17 1.56 5.16 0.01 2.18 16 12 C 0.01 0.13 6.26 86.25 0.54 0.67 16 13 N -0.46 -11.67 3.60 -914.25 -3.29 -14.95 16 14 C 0.04 1.13 4.80 86.30 0.41 1.55 16 15 C -0.07 -2.87 5.46 30.60 0.17 -2.70 16 16 C 0.03 1.33 4.97 29.85 0.15 1.48 16 17 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16 18 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 21 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.00 -0.02 6.50 86.24 0.56 0.54 16 26 O -0.39 -10.89 8.19 -119.20 -0.98 -11.87 16 27 C 0.02 0.48 9.98 113.37 1.13 1.61 16 28 H 0.05 1.18 4.66 -2.39 -0.01 1.17 16 29 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 2.12 8.13 -2.38 -0.02 2.10 16 31 H 0.06 1.41 7.60 -2.39 -0.02 1.39 16 32 H 0.09 2.02 7.56 -2.39 -0.02 2.00 16 33 H 0.12 2.57 5.38 -2.39 -0.01 2.55 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.09 0.88 8.13 -2.39 -0.02 0.86 16 37 H 0.13 1.54 7.86 -2.38 -0.02 1.52 16 38 H 0.07 1.76 7.23 -2.39 -0.02 1.75 16 39 H 0.10 2.92 5.47 -2.39 -0.01 2.91 16 40 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 41 H 0.04 1.15 7.38 -2.39 -0.02 1.13 16 42 H 0.04 1.62 8.12 -2.39 -0.02 1.60 16 43 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 44 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 45 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 46 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 47 H 0.10 1.65 7.03 -2.38 -0.02 1.63 16 48 H 0.10 1.47 7.87 -2.38 -0.02 1.45 16 49 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.05 0.93 7.86 -2.39 -0.02 0.91 16 51 H 0.05 0.97 5.85 -2.38 -0.01 0.96 16 Total: -1.00 -72.52 389.77 1.97 -70.56 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.92 Total: 15.44 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 7.08 Total: 1.34 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -5.06 Total: -85.95 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -2.99 Total: -47.72 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.52 1.97 -70.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.841 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds