Wall clock time and date at job start Wed Apr 1 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 119.99909 * 2 1 4 4 H 1.07994 * 119.99983 * 213.54334 * 3 2 1 5 5 C 1.38815 * 120.00162 * 33.54329 * 3 2 1 6 6 N 1.31617 * 119.99878 * 5.68352 * 5 3 2 7 7 Si 1.86792 * 120.00140 * 185.68567 * 5 3 2 8 8 H 1.48506 * 109.47332 * 89.99787 * 7 5 3 9 9 H 1.48497 * 109.47356 * 209.99708 * 7 5 3 10 10 H 1.48498 * 109.47140 * 330.00114 * 7 5 3 11 11 C 1.46501 * 119.99815 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47119 * 90.00257 * 11 2 1 13 13 C 1.52995 * 109.47403 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47302 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00211 * 270.00187 * 14 13 12 16 16 C 1.34775 * 119.99966 * 90.00496 * 14 13 12 17 17 O 1.21705 * 119.99880 * 0.95283 * 16 14 13 18 18 C 1.46656 * 120.00278 * 180.95587 * 16 14 13 19 19 C 1.37834 * 126.82141 * 169.96271 * 18 16 14 20 20 N 1.32966 * 107.98881 * 179.97438 * 19 18 16 21 21 C 1.31795 * 109.77572 * 359.97438 * 20 19 18 22 22 C 1.47823 * 125.50717 * 180.02562 * 21 20 19 23 23 C 1.39586 * 120.14473 * 179.70238 * 22 21 20 24 24 C 1.37953 * 119.85010 * 179.74594 * 23 22 21 25 25 C 1.38366 * 120.14579 * 0.50196 * 24 23 22 26 26 C 1.38359 * 120.29546 * 359.77371 * 25 24 23 27 27 C 1.37952 * 120.14301 * 359.97274 * 26 25 24 28 28 N 1.35902 * 108.98625 * 359.97438 * 21 20 19 29 29 H 0.97006 * 126.55659 * 180.26031 * 28 21 20 30 30 H 1.08999 * 109.47016 * 265.09868 * 1 2 3 31 31 H 1.08997 * 109.47372 * 25.09995 * 1 2 3 32 32 H 1.09002 * 109.47153 * 145.09918 * 1 2 3 33 33 H 0.97002 * 119.99879 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47301 * 330.00224 * 11 2 1 35 35 H 1.09005 * 109.47016 * 210.00171 * 11 2 1 36 36 H 1.09007 * 109.47345 * 59.99838 * 12 11 2 37 37 H 1.09005 * 109.47106 * 299.99859 * 12 11 2 38 38 H 1.08998 * 109.46769 * 60.00120 * 13 12 11 39 39 H 1.08997 * 109.47529 * 300.00211 * 13 12 11 40 40 H 1.08999 * 109.47193 * 263.28078 * 15 14 13 41 41 H 1.08992 * 109.46992 * 23.28246 * 15 14 13 42 42 H 1.08997 * 109.47107 * 143.28103 * 15 14 13 43 43 H 1.07999 * 126.00565 * 359.93789 * 19 18 16 44 44 H 1.07997 * 120.07162 * 359.97134 * 23 22 21 45 45 H 1.08000 * 119.92968 * 180.25296 * 24 23 22 46 46 H 1.08004 * 119.84837 * 179.74463 * 25 24 23 47 47 H 1.07994 * 119.93030 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.07579 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0947 1.2638 -0.5168 5 6 1.6290 2.2880 0.6643 6 7 0.5357 2.1649 1.3866 7 14 2.4799 3.9456 0.5329 8 1 1.9287 4.6947 -0.6248 9 1 2.2497 4.7204 1.7786 10 1 3.9379 3.7397 0.3403 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2180 -3.0357 -1.4412 14 7 3.4617 -3.4595 -2.8222 15 6 2.4850 -4.3062 -3.5118 16 6 4.5844 -3.0705 -3.4583 17 8 5.4040 -2.3816 -2.8797 18 6 4.8184 -3.4774 -4.8478 19 6 5.8055 -3.0119 -5.6897 20 7 5.6740 -3.6316 -6.8588 21 6 4.6566 -4.4679 -6.8082 22 6 4.2017 -5.3346 -7.9159 23 6 3.1102 -6.1861 -7.7369 24 6 2.6876 -6.9884 -8.7765 25 6 3.3494 -6.9580 -9.9912 26 6 4.4356 -6.1205 -10.1734 27 6 4.8652 -5.3092 -9.1437 28 7 4.0940 -4.4056 -5.5726 29 1 3.3319 -4.9168 -5.2583 30 1 -0.3633 -0.0878 1.0239 31 1 -0.3634 0.9306 -0.4359 32 1 -0.3633 -0.8428 -0.5880 33 1 0.1716 2.9351 1.8505 34 1 1.6084 -2.0282 0.5147 35 1 3.1499 -1.1382 0.5144 36 1 3.0417 -0.9516 -1.9559 37 1 1.5001 -1.8416 -1.9555 38 1 2.6292 -3.7953 -0.9270 39 1 4.1704 -2.9049 -0.9275 40 1 2.7937 -5.3491 -3.4405 41 1 1.5065 -4.1843 -3.0474 42 1 2.4281 -4.0150 -4.5607 43 1 6.5538 -2.2731 -5.4434 44 1 2.5956 -6.2140 -6.7879 45 1 1.8407 -7.6447 -8.6407 46 1 3.0170 -7.5912 -10.8005 47 1 4.9475 -6.1011 -11.1241 48 1 5.7129 -4.6555 -9.2873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673474513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:12 Heat of formation + Delta-G solvation = 88.442482 kcal Electronic energy + Delta-G solvation = -28557.463645 eV Core-core repulsion = 24614.793638 eV Total energy + Delta-G solvation = -3942.670007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.50661 -39.73170 -39.19210 -36.40711 -35.50943 -33.45054 -32.65774 -32.07591 -31.35467 -30.28918 -28.98561 -27.44278 -26.01362 -25.56070 -23.96010 -23.32447 -22.65007 -21.69667 -21.07433 -20.26194 -20.13424 -18.18011 -17.28393 -16.67683 -16.46872 -16.17972 -16.05098 -15.65916 -15.13987 -15.00004 -14.71056 -14.28663 -14.24343 -13.96957 -13.80037 -13.69578 -13.44871 -13.35064 -13.14931 -12.93161 -12.70616 -12.44507 -11.90342 -11.79085 -11.60497 -11.32060 -10.95829 -10.82258 -10.74888 -10.62821 -10.51614 -10.41383 -10.21298 -10.06449 -9.95247 -9.90113 -9.69588 -9.46749 -8.88562 -8.46220 -8.31047 -6.54392 -5.71808 -3.25938 0.28673 0.89945 1.33000 2.37681 2.57395 2.81789 3.17457 3.41335 3.44069 3.47313 3.50632 3.77126 4.19414 4.33167 4.43557 4.49880 4.53574 4.64291 4.71658 4.79458 4.92202 4.98608 5.10728 5.15013 5.28913 5.30239 5.41242 5.43716 5.46420 5.57143 5.74455 5.89118 5.94666 5.96460 6.01122 6.05233 6.10793 6.29319 6.41180 6.46431 6.52783 6.76538 6.78906 6.84818 7.04193 7.14967 7.35722 7.55944 7.68363 7.87616 7.98859 8.52463 9.29843 9.89772 10.44503 11.34501 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.001974 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.275332 B =14182.038814 C =14601.220598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.600 5.600 3 C -0.257 4.257 4 H 0.064 0.936 5 C 0.008 3.992 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.155 3.845 12 C -0.152 4.152 13 C 0.117 3.883 14 N -0.611 5.611 15 C 0.059 3.941 16 C 0.591 3.409 17 O -0.512 6.512 18 C -0.072 4.072 19 C 0.073 3.927 20 N -0.477 5.477 21 C 0.263 3.737 22 C -0.019 4.019 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.109 4.109 26 C -0.118 4.118 27 C -0.074 4.074 28 N -0.553 5.553 29 H 0.426 0.574 30 H 0.019 0.981 31 H 0.048 0.952 32 H -0.009 1.009 33 H 0.253 0.747 34 H 0.033 0.967 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.189 0.811 44 H 0.117 0.883 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.130 0.870 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -23.336 -20.949 31.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.387 4.387 4 H 0.081 0.919 5 C -0.191 4.191 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.202 1.202 11 C 0.027 3.973 12 C -0.193 4.193 13 C -0.004 4.004 14 N -0.344 5.344 15 C -0.085 4.085 16 C 0.378 3.622 17 O -0.387 6.387 18 C -0.188 4.188 19 C -0.083 4.083 20 N -0.196 5.196 21 C 0.004 3.996 22 C -0.021 4.021 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.093 4.093 28 N -0.166 5.166 29 H 0.273 0.727 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.010 0.990 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.206 0.794 44 H 0.135 0.865 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.148 0.852 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.167 -22.671 -21.097 31.247 hybrid contribution -0.750 0.567 0.791 1.228 sum 3.418 -22.104 -20.306 30.209 Atomic orbital electron populations 1.20722 0.83261 0.96771 0.97421 1.43761 1.01480 1.00716 1.86274 1.19138 1.04877 0.88030 1.26688 0.91867 1.25293 0.97938 0.99260 0.96628 1.70009 1.22325 1.29382 1.33316 0.86273 0.79527 0.83920 0.76967 1.21427 1.21625 1.20216 1.20636 0.96257 0.88535 0.91867 1.22620 0.99114 0.95246 1.02319 1.21695 1.01858 0.97221 0.79664 1.47821 1.20031 1.51101 1.15484 1.22152 0.94669 0.94098 0.97625 1.16849 0.81743 0.80212 0.83401 1.90903 1.44749 1.37481 1.65572 1.21605 1.00614 1.01443 0.95146 1.22943 0.97748 0.99924 0.87647 1.70262 1.16249 1.09145 1.23920 1.21414 0.93537 0.99265 0.85416 1.17638 0.96921 0.96126 0.91392 1.21061 0.96094 0.96451 0.99399 1.21027 1.00164 0.99179 0.93026 1.21343 0.95562 0.98483 0.97416 1.21185 0.97067 0.96201 0.99130 1.21271 0.99127 0.97887 0.91060 1.44491 1.27364 1.33054 1.11642 0.72678 0.96239 0.93353 0.99035 0.93720 0.94867 0.93245 0.91652 0.92995 0.90622 0.89457 0.92318 0.88957 0.91550 0.79364 0.86469 0.85352 0.85582 0.85209 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 9.00 59.85 0.54 4.62 16 2 N -0.60 -15.55 2.89 -181.12 -0.52 -16.08 16 3 C -0.26 -7.35 9.55 -15.06 -0.14 -7.50 16 4 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 5 C 0.01 0.22 5.16 -17.43 -0.09 0.13 16 6 N -0.91 -27.07 11.08 55.49 0.61 -26.46 16 7 Si 0.90 22.55 29.56 -169.99 -5.02 17.52 16 8 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.16 3.23 5.69 -4.04 -0.02 3.21 16 12 C -0.15 -2.69 5.86 -26.74 -0.16 -2.85 16 13 C 0.12 1.63 5.38 -4.04 -0.02 1.61 16 14 N -0.61 -7.63 2.87 -183.14 -0.53 -8.16 16 15 C 0.06 0.46 8.91 59.85 0.53 0.99 16 16 C 0.59 8.71 7.64 -12.86 -0.10 8.61 16 17 O -0.51 -9.48 16.50 5.18 0.09 -9.40 16 18 C -0.07 -0.91 6.69 -81.71 -0.55 -1.45 16 19 C 0.07 0.95 11.70 -17.21 -0.20 0.75 16 20 N -0.48 -6.05 10.79 -10.76 -0.12 -6.17 16 21 C 0.26 2.82 7.74 -154.89 -1.20 1.62 16 22 C -0.02 -0.16 5.87 -104.97 -0.62 -0.78 16 23 C -0.11 -0.71 9.69 -39.18 -0.38 -1.09 16 24 C -0.12 -0.62 10.03 -39.64 -0.40 -1.02 16 25 C -0.11 -0.57 10.04 -39.49 -0.40 -0.97 16 26 C -0.12 -0.71 10.03 -39.64 -0.40 -1.10 16 27 C -0.07 -0.59 9.69 -39.18 -0.38 -0.97 16 28 N -0.55 -5.33 5.03 -7.13 -0.04 -5.36 16 29 H 0.43 2.82 4.19 -40.82 -0.17 2.65 16 30 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 31 H 0.05 1.30 7.21 -51.93 -0.37 0.93 16 32 H -0.01 -0.19 8.11 -51.93 -0.42 -0.61 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 34 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 39 H 0.09 1.33 7.41 -51.93 -0.38 0.95 16 40 H 0.06 0.31 7.78 -51.93 -0.40 -0.09 16 41 H 0.09 0.64 8.02 -51.93 -0.42 0.23 16 42 H 0.07 0.48 5.15 -51.93 -0.27 0.21 16 43 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 44 H 0.12 0.50 7.14 -52.49 -0.37 0.13 16 45 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 46 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 47 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 48 H 0.14 1.13 7.82 -52.48 -0.41 0.72 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -35.66 398.15 -10.47 -46.13 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.97 Total: -1.84 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -3.98 Total: 3.81 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.59 Total: -62.22 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.66 -10.47 -46.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673474513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.573 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds