Wall clock time and date at job start Wed Apr 1 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99886 * 2 1 4 4 C 1.53007 * 109.46567 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.54513 * 299.99532 * 4 3 2 6 6 O 1.21276 * 120.00623 * 239.82473 * 5 4 3 7 7 N 1.34782 * 119.99514 * 59.82734 * 5 4 3 8 8 C 1.46503 * 119.99836 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47047 * 180.02562 * 8 7 5 10 10 O 1.42897 * 110.88565 * 303.88129 * 9 8 7 11 11 C 1.55152 * 111.00471 * 180.02562 * 9 8 7 12 12 C 1.54318 * 102.94511 * 206.42492 * 11 9 8 13 13 N 1.47022 * 107.27253 * 22.18990 * 12 11 9 14 14 C 1.36933 * 125.65341 * 181.02674 * 13 12 11 15 15 H 1.08006 * 120.00444 * 153.90406 * 14 13 12 16 16 C 1.38817 * 119.99751 * 333.90252 * 14 13 12 17 17 N 1.31616 * 120.00100 * 145.63931 * 16 14 13 18 18 Si 1.86797 * 119.99742 * 325.63468 * 16 14 13 19 19 H 1.48495 * 109.47312 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46991 * 120.00404 * 18 16 14 21 21 H 1.48502 * 109.47132 * 239.99993 * 18 16 14 22 22 C 1.47424 * 108.69946 * 1.29134 * 13 12 11 23 23 C 1.53174 * 109.61624 * 60.22558 * 4 3 2 24 24 C 1.53094 * 109.16325 * 176.88760 * 23 4 3 25 25 O 1.42903 * 109.41431 * 302.39281 * 24 23 4 26 26 C 1.42901 * 114.10220 * 61.15377 * 25 24 23 27 27 C 1.53089 * 109.41563 * 298.84805 * 26 25 24 28 28 H 1.09003 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47414 * 300.00015 * 1 2 3 30 30 H 1.08998 * 109.46695 * 60.00499 * 1 2 3 31 31 H 1.09005 * 109.47201 * 59.99944 * 3 2 1 32 32 H 1.08994 * 109.47465 * 299.99650 * 3 2 1 33 33 H 0.97004 * 120.00175 * 359.97438 * 7 5 4 34 34 H 1.09001 * 109.47026 * 59.99836 * 8 7 5 35 35 H 1.08997 * 109.47190 * 300.00375 * 8 7 5 36 36 H 0.96701 * 114.00137 * 56.12335 * 10 9 8 37 37 H 1.09001 * 110.72609 * 88.05778 * 11 9 8 38 38 H 1.09005 * 110.72274 * 324.78637 * 11 9 8 39 39 H 1.09006 * 109.88476 * 262.77823 * 12 11 9 40 40 H 1.08998 * 109.88900 * 141.61115 * 12 11 9 41 41 H 0.97006 * 120.00091 * 5.05677 * 17 16 14 42 42 H 1.09000 * 110.36988 * 94.48149 * 22 13 12 43 43 H 1.09005 * 110.36594 * 216.80532 * 22 13 12 44 44 H 1.08999 * 109.51782 * 296.79219 * 23 4 3 45 45 H 1.09000 * 109.52715 * 56.98258 * 23 4 3 46 46 H 1.08994 * 109.48360 * 182.40536 * 24 23 4 47 47 H 1.09002 * 109.48054 * 62.37195 * 24 23 4 48 48 H 1.08993 * 109.48559 * 178.85932 * 26 25 24 49 49 H 1.09000 * 109.48948 * 58.83075 * 26 25 24 50 50 H 1.09001 * 109.51767 * 297.69603 * 27 26 25 51 51 H 1.09004 * 109.52474 * 177.51469 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9815 0.4371 1.2309 6 8 4.7259 0.9689 2.0270 7 7 3.5531 -0.8225 1.4464 8 6 3.9870 -1.5493 2.6421 9 6 3.3624 -2.9460 2.6446 10 8 1.9383 -2.8674 2.5575 11 6 3.7990 -3.7482 3.8988 12 6 3.6903 -5.2135 3.4271 13 7 3.7668 -5.2063 1.9589 14 6 3.6884 -6.3085 1.1502 15 1 3.3373 -6.2087 0.1337 16 6 4.0603 -7.5542 1.6368 17 7 3.4256 -8.6345 1.2338 18 14 5.4616 -7.6973 2.8636 19 1 6.0059 -6.3464 3.1533 20 1 4.9588 -8.3079 4.1204 21 1 6.5339 -8.5516 2.2929 22 6 3.9482 -3.8165 1.5019 23 6 3.9921 0.4294 -1.2514 24 6 5.5220 0.3821 -1.2799 25 8 6.0390 1.7140 -1.2510 26 6 5.6838 2.4527 -0.0805 27 6 4.1604 2.5831 -0.0038 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 2.9574 -1.2478 0.8098 34 1 3.6688 -1.0069 3.5324 35 1 5.0734 -1.6375 2.6394 36 1 1.6177 -2.3750 1.7894 37 1 3.1219 -3.5600 4.7320 38 1 4.8259 -3.5066 4.1730 39 1 2.7376 -5.6361 3.7465 40 1 4.5137 -5.7975 3.8384 41 1 2.7479 -8.5695 0.5427 42 1 5.0069 -3.5987 1.3606 43 1 3.3983 -3.6466 0.5762 44 1 3.5966 -0.5861 -1.2287 45 1 3.6270 0.9436 -2.1404 46 1 5.8534 -0.1169 -2.1905 47 1 5.8849 -0.1675 -0.4113 48 1 6.1317 3.4452 -0.1270 49 1 6.0488 1.9303 0.8039 50 1 3.7987 3.1409 -0.8676 51 1 3.8852 3.1079 0.9111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724400607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:14 Heat of formation + Delta-G solvation = -147.018354 kcal Electronic energy + Delta-G solvation = -32965.715222 eV Core-core repulsion = 28673.233196 eV Total energy + Delta-G solvation = -4292.482026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.23135 -39.12135 -38.12116 -38.00819 -35.31457 -34.48844 -34.12712 -32.35900 -31.32919 -29.96102 -28.74530 -28.33409 -26.42260 -25.91700 -23.93130 -23.74238 -22.94947 -21.90566 -20.64703 -20.09153 -19.62803 -17.49223 -17.45270 -16.82078 -16.74523 -16.46842 -16.17080 -15.97702 -15.60961 -15.42138 -14.99410 -14.79182 -14.66777 -14.55494 -14.04911 -13.83046 -13.52186 -13.42261 -13.06746 -12.95000 -12.74908 -12.59734 -12.51431 -12.33332 -12.11577 -11.80840 -11.74106 -11.53009 -11.30154 -11.13881 -10.95833 -10.80229 -10.73624 -10.59845 -10.44754 -10.14906 -9.89729 -9.73581 -9.55908 -9.49791 -9.26644 -9.05979 -8.23928 -7.05188 -6.30604 -3.24618 2.46261 2.99897 3.26026 3.47092 3.53541 3.68143 3.71452 4.20512 4.26957 4.36622 4.46504 4.60371 4.63483 4.72809 4.75425 4.90379 4.92483 5.00930 5.02970 5.05872 5.10011 5.14636 5.27133 5.31886 5.32292 5.38023 5.42481 5.46007 5.50455 5.56001 5.68729 5.73788 5.74842 5.78766 5.87918 5.93594 6.12166 6.18586 6.35754 6.43389 6.44722 6.65158 6.73843 6.89568 7.01810 7.44187 7.83977 7.92030 8.13982 8.38042 9.01699 9.61395 10.35017 11.06417 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.003322 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.111972 B = 8426.489737 C = 8898.777226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.075 3.925 4 C -0.078 4.078 5 C 0.526 3.474 6 O -0.543 6.543 7 N -0.711 5.711 8 C 0.102 3.898 9 C 0.104 3.896 10 O -0.537 6.537 11 C -0.114 4.114 12 C 0.128 3.872 13 N -0.595 5.595 14 C -0.342 4.342 15 H 0.065 0.935 16 C -0.004 4.004 17 N -0.902 5.902 18 Si 1.049 2.951 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.298 1.298 22 C 0.111 3.889 23 C -0.140 4.140 24 C 0.057 3.943 25 O -0.383 6.383 26 C 0.051 3.949 27 C -0.127 4.127 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.367 0.633 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.028 0.972 43 H 0.042 0.958 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.051 0.949 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 24.263 -3.070 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.002 4.002 4 C -0.081 4.081 5 C 0.312 3.688 6 O -0.421 6.421 7 N -0.365 5.365 8 C -0.022 4.022 9 C 0.062 3.938 10 O -0.342 6.342 11 C -0.153 4.153 12 C 0.003 3.997 13 N -0.322 5.322 14 C -0.469 4.469 15 H 0.083 0.917 16 C -0.208 4.208 17 N -0.540 5.540 18 Si 0.880 3.120 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.226 1.226 22 C -0.015 4.015 23 C -0.177 4.177 24 C -0.020 4.020 25 O -0.302 6.302 26 C -0.026 4.026 27 C -0.165 4.165 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.245 0.755 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.213 0.787 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.117 0.883 47 H 0.070 0.930 48 H 0.111 0.889 49 H 0.096 0.904 50 H 0.097 0.903 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.296 22.998 -1.216 23.067 hybrid contribution -1.605 1.281 -1.583 2.593 sum -2.901 24.279 -2.799 24.612 Atomic orbital electron populations 1.22801 0.79855 1.03576 1.00120 1.87692 1.20634 1.27445 1.95449 1.22492 0.90988 0.85379 1.01326 1.20975 0.94962 0.97327 0.94855 1.20202 0.80220 0.81686 0.86694 1.90643 1.36317 1.67900 1.47221 1.46049 1.50230 1.14586 1.25676 1.22004 1.00178 0.92130 0.87918 1.22670 0.81151 0.91502 0.98453 1.86587 1.19659 1.78145 1.49803 1.22568 1.00889 0.96041 0.95775 1.21579 0.99203 0.93039 0.85876 1.44522 1.85445 1.01486 1.00734 1.19738 1.43556 0.85742 0.97879 0.91740 1.26049 1.00568 0.91144 1.03044 1.70920 1.23683 1.31316 1.28057 0.84037 0.77505 0.74670 0.75813 1.20597 1.21891 1.22551 1.22272 0.97071 0.87466 0.94733 1.22222 0.97332 1.01883 0.96308 1.22614 0.92276 0.84356 1.02741 1.87908 1.74610 1.25430 1.42271 1.22804 0.93308 0.97198 0.89272 1.21975 0.97411 0.93738 1.03352 0.88850 0.93818 0.93840 0.92515 0.91803 0.75464 0.90876 0.90446 0.78657 0.90314 0.90213 0.94280 0.95198 0.92389 0.95485 0.94001 0.89437 0.89834 0.88257 0.93031 0.88925 0.90380 0.90338 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.35 7.61 -35.23 -0.27 -3.62 16 3 C 0.08 0.59 4.81 37.16 0.18 0.77 16 4 C -0.08 -0.74 0.53 -155.48 -0.08 -0.82 16 5 C 0.53 6.53 5.15 -10.99 -0.06 6.47 16 6 O -0.54 -8.20 13.84 5.56 0.08 -8.13 16 7 N -0.71 -8.75 4.73 -60.29 -0.29 -9.03 16 8 C 0.10 1.42 4.88 -4.04 -0.02 1.40 16 9 C 0.10 1.71 0.97 -88.35 -0.09 1.62 16 10 O -0.54 -8.87 13.21 -35.23 -0.47 -9.34 16 11 C -0.11 -1.97 6.15 -24.90 -0.15 -2.13 16 12 C 0.13 2.85 6.04 -3.07 -0.02 2.83 16 13 N -0.59 -14.67 3.05 -169.93 -0.52 -15.19 16 14 C -0.34 -9.80 10.24 -15.06 -0.15 -9.95 16 15 H 0.06 1.96 8.06 -52.48 -0.42 1.53 16 16 C 0.00 -0.12 5.29 -17.43 -0.09 -0.21 16 17 N -0.90 -27.95 13.70 55.49 0.76 -27.19 16 18 Si 1.05 26.37 26.22 -169.99 -4.46 21.92 16 19 H -0.28 -6.61 6.18 56.52 0.35 -6.26 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 22 C 0.11 2.19 6.23 -2.41 -0.02 2.18 16 23 C -0.14 -1.28 4.67 -26.59 -0.12 -1.41 16 24 C 0.06 0.61 6.62 37.21 0.25 0.85 16 25 O -0.38 -4.50 10.77 -35.23 -0.38 -4.88 16 26 C 0.05 0.53 6.55 37.20 0.24 0.77 16 27 C -0.13 -1.12 4.56 -26.59 -0.12 -1.24 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.41 4.72 4.65 -40.82 -0.19 4.53 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.37 4.89 7.69 45.56 0.35 5.24 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.69 3.85 -51.93 -0.20 0.49 16 41 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 42 H 0.03 0.54 7.99 -51.93 -0.41 0.13 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.83 7.18 -51.93 -0.37 0.46 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 0.63 7.38 -51.93 -0.38 0.24 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.99 5.80 -51.93 -0.30 0.69 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -34.20 388.53 -6.71 -40.91 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.89 Total: 6.22 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 0.86 Total: 2.47 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.04 Total: -51.41 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.04 Total: -25.96 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.46 Total: 21.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.20 -6.71 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724400607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.104 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds