Wall clock time and date at job start Wed Apr 1 2020 02:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48506 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47001 * 299.99743 * 3 2 1 6 6 H 1.48500 * 109.47670 * 59.99466 * 3 2 1 7 7 C 1.38817 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00037 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99683 * 0.02562 * 7 2 1 10 10 C 1.47431 * 125.65006 * 359.96738 * 9 7 2 11 11 C 1.54913 * 104.83170 * 155.91487 * 10 9 7 12 12 C 1.55156 * 101.58359 * 37.00821 * 11 10 9 13 13 H 1.09001 * 110.71678 * 83.03990 * 12 11 10 14 14 C 1.53000 * 110.72136 * 206.13404 * 12 11 10 15 15 H 1.09005 * 109.58300 * 69.83008 * 14 12 11 16 16 C 1.53193 * 109.70194 * 309.47653 * 14 12 11 17 17 C 1.53038 * 109.31063 * 185.50596 * 16 14 12 18 18 C 1.53043 * 109.53762 * 61.36200 * 17 16 14 19 19 C 1.53192 * 109.31329 * 298.63362 * 18 17 16 20 20 N 1.46923 * 109.58677 * 190.11461 * 14 12 11 21 21 C 1.34775 * 120.63139 * 353.55537 * 20 14 12 22 22 O 1.21277 * 119.99863 * 6.61477 * 21 20 14 23 23 C 1.50700 * 120.00149 * 186.61254 * 21 20 14 24 24 C 1.50699 * 109.47186 * 180.02562 * 23 21 20 25 25 C 1.38230 * 119.99871 * 269.72324 * 24 23 21 26 26 C 1.38234 * 120.00088 * 179.79068 * 25 24 23 27 27 C 1.38239 * 119.99832 * 0.45950 * 26 25 24 28 28 C 1.38235 * 119.99800 * 359.77250 * 27 26 25 29 29 C 1.38231 * 120.00158 * 89.99941 * 24 23 21 30 30 C 1.47323 * 125.61866 * 180.19975 * 9 7 2 31 31 H 0.96993 * 120.00317 * 0.02562 * 1 2 3 32 32 H 1.08996 * 110.36673 * 37.07349 * 10 9 7 33 33 H 1.09004 * 110.36575 * 274.75357 * 10 9 7 34 34 H 1.08997 * 111.00086 * 278.93234 * 11 10 9 35 35 H 1.09000 * 111.03640 * 155.09674 * 11 10 9 36 36 H 1.09000 * 109.49540 * 305.45429 * 16 14 12 37 37 H 1.08994 * 109.49774 * 65.55297 * 16 14 12 38 38 H 1.08998 * 109.46038 * 301.34706 * 17 16 14 39 39 H 1.08997 * 109.46160 * 181.38084 * 17 16 14 40 40 H 1.09005 * 109.49689 * 178.68627 * 18 17 16 41 41 H 1.09004 * 109.52468 * 58.60554 * 18 17 16 42 42 H 1.08996 * 109.59011 * 294.84654 * 19 18 17 43 43 H 1.08997 * 109.58349 * 174.42152 * 19 18 17 44 44 H 1.09001 * 109.46973 * 300.00293 * 23 21 20 45 45 H 1.09002 * 109.47206 * 59.99954 * 23 21 20 46 46 H 1.08006 * 120.00211 * 0.02562 * 25 24 23 47 47 H 1.07997 * 120.00253 * 180.25609 * 26 25 24 48 48 H 1.07999 * 119.99751 * 179.78923 * 27 26 25 49 49 H 1.08005 * 119.99683 * 179.97438 * 28 27 26 50 50 H 1.08004 * 120.00453 * 359.97438 * 29 24 23 51 51 H 1.09000 * 110.06401 * 61.66601 * 30 9 7 52 52 H 1.09007 * 109.84408 * 300.41312 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1415 -2.5332 0.0007 11 6 -0.4015 -3.9327 -0.6105 12 6 0.7786 -4.7525 -0.0251 13 1 0.5448 -5.1002 0.9811 14 6 1.1233 -5.9318 -0.9368 15 1 1.5721 -5.5619 -1.8588 16 6 -0.1487 -6.7199 -1.2650 17 6 0.2234 -7.9724 -2.0618 18 6 1.1390 -8.8624 -1.2182 19 6 2.4256 -8.0986 -0.8895 20 7 2.0688 -6.8238 -0.2520 21 6 2.5987 -6.4793 0.9384 22 8 2.2075 -5.4845 1.5111 23 6 3.6772 -7.3304 1.5577 24 6 4.0941 -6.7318 2.8764 25 6 5.1239 -5.8108 2.9226 26 6 5.5035 -5.2585 4.1316 27 6 4.8597 -5.6343 5.2957 28 6 3.8331 -6.5590 5.2501 29 6 3.4507 -7.1080 4.0405 30 6 1.9339 -3.7298 0.0052 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5993 -1.7592 -0.6152 33 1 -0.5272 -2.4863 1.0191 34 1 -0.3520 -3.8990 -1.6988 35 1 -1.3589 -4.3334 -0.2773 36 1 -0.6449 -7.0117 -0.3394 37 1 -0.8194 -6.0978 -1.8575 38 1 0.7416 -7.6810 -2.9754 39 1 -0.6822 -8.5223 -2.3178 40 1 1.3848 -9.7653 -1.7774 41 1 0.6310 -9.1346 -0.2930 42 1 2.9806 -7.9054 -1.8075 43 1 3.0373 -8.6894 -0.2078 44 1 3.2958 -8.3383 1.7210 45 1 4.5369 -7.3712 0.8888 46 1 5.6294 -5.5198 2.0135 47 1 6.3053 -4.5358 4.1671 48 1 5.1585 -5.2054 6.2407 49 1 3.3303 -6.8529 6.1597 50 1 2.6488 -7.8307 4.0051 51 1 2.5278 -3.8680 0.9087 52 1 2.5624 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039213200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:46 Heat of formation + Delta-G solvation = 42.330175 kcal Electronic energy + Delta-G solvation = -31472.001354 eV Core-core repulsion = 27630.872111 eV Total energy + Delta-G solvation = -3841.129243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.72231 -39.07823 -37.23110 -36.79886 -33.50404 -32.76928 -32.39112 -30.95789 -30.81370 -28.72916 -28.02395 -26.91825 -25.12703 -24.00034 -22.92201 -22.52290 -21.74366 -20.73144 -19.80676 -19.48113 -18.92791 -17.06641 -16.77214 -16.23409 -15.86074 -15.62017 -15.10715 -14.80998 -14.70277 -14.51169 -14.10266 -13.92307 -13.69992 -13.45733 -13.35482 -13.28251 -12.98329 -12.86348 -12.35432 -12.31287 -12.09614 -11.97837 -11.52856 -11.38906 -11.29061 -11.07381 -11.02207 -10.94443 -10.89757 -10.77140 -10.65151 -10.53258 -9.94290 -9.91804 -9.75348 -9.48765 -9.30827 -8.81783 -8.78215 -8.53220 -8.38316 -8.25547 -6.54082 -5.46125 -2.84578 1.40268 1.50410 2.86082 3.10673 3.49505 3.54401 3.57269 3.87670 4.56434 4.60407 4.65849 4.73683 4.75172 4.84918 4.93439 5.05182 5.06072 5.15607 5.22542 5.27040 5.30700 5.39120 5.44803 5.56859 5.61284 5.66171 5.67050 5.69899 5.77183 5.85444 5.89786 5.97652 6.03619 6.05241 6.06548 6.10232 6.24994 6.36658 6.45361 6.51708 6.58643 6.61846 6.64524 6.68661 6.88487 7.04941 7.07345 7.21989 7.49982 7.61934 7.75497 7.83555 8.05837 8.52276 8.61223 9.43223 10.05422 10.73622 11.57886 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007752 B = 0.004605 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.987676 B = 6078.359147 C = 8944.644769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.018 4.018 3 Si 0.909 3.091 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.208 4.208 8 H 0.073 0.927 9 N -0.606 5.606 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.090 4.090 13 H 0.101 0.899 14 C 0.160 3.840 15 H 0.068 0.932 16 C -0.128 4.128 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.108 3.892 20 N -0.613 5.613 21 C 0.495 3.505 22 O -0.484 6.484 23 C -0.101 4.101 24 C -0.063 4.063 25 C -0.102 4.102 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.121 4.121 29 C -0.106 4.106 30 C 0.147 3.853 31 H 0.248 0.752 32 H 0.101 0.899 33 H 0.007 0.993 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.057 0.943 52 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 -23.163 1.370 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.212 4.212 3 Si 0.741 3.259 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.337 4.337 8 H 0.091 0.909 9 N -0.332 5.332 10 C 0.032 3.968 11 C -0.185 4.185 12 C -0.109 4.109 13 H 0.119 0.881 14 C 0.057 3.943 15 H 0.085 0.915 16 C -0.166 4.166 17 C -0.158 4.158 18 C -0.172 4.172 19 C -0.015 4.015 20 N -0.349 5.349 21 C 0.283 3.717 22 O -0.358 6.358 23 C -0.141 4.141 24 C -0.063 4.063 25 C -0.120 4.120 26 C -0.135 4.135 27 C -0.140 4.140 28 C -0.139 4.139 29 C -0.124 4.124 30 C 0.022 3.978 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.074 0.926 52 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 5.770 -22.392 1.692 23.185 hybrid contribution 0.446 0.814 -0.114 0.935 sum 6.215 -21.578 1.578 22.511 Atomic orbital electron populations 1.69825 1.04784 1.24159 1.58756 1.24740 0.95675 0.97435 1.03362 0.86050 0.78629 0.84110 0.77121 1.20702 1.21958 1.21937 1.19130 0.90395 0.82807 1.41405 0.90866 1.44650 1.01960 1.00121 1.86431 1.21827 0.84920 0.92325 0.97775 1.23154 0.96417 0.99525 0.99398 1.22600 0.96704 0.92570 0.98994 0.88098 1.21378 0.88022 0.89439 0.95412 0.91452 1.21969 0.97699 0.96393 1.00580 1.21532 0.99343 0.96431 0.98470 1.21913 0.96437 0.98206 1.00673 1.21683 0.96799 0.84705 0.98327 1.48051 1.46040 1.20067 1.20723 1.20435 0.83739 0.86014 0.81489 1.90834 1.59364 1.24651 1.60989 1.20745 0.98729 0.99521 0.95120 1.19261 0.96045 0.97497 0.93512 1.20978 0.97100 0.96052 0.97905 1.21100 1.00211 0.99527 0.92653 1.21114 0.96736 0.97905 0.98265 1.21056 0.97529 0.97619 0.97662 1.20911 0.98937 1.00341 0.92245 1.21830 0.93794 0.84654 0.97527 0.94108 0.88091 0.97550 0.92868 0.92941 0.91646 0.90413 0.91871 0.91897 0.91050 0.91574 0.91581 0.90048 0.88638 0.88541 0.86323 0.86174 0.86366 0.86337 0.86545 0.92602 0.98181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 10.09 55.49 0.56 -28.19 16 2 C -0.02 -0.53 5.49 -17.43 -0.10 -0.63 16 3 Si 0.91 23.46 29.55 -169.99 -5.02 18.44 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.21 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.07 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.61 -17.17 3.40 -169.82 -0.58 -17.75 16 10 C 0.16 4.19 5.89 -2.52 -0.01 4.18 16 11 C -0.15 -3.02 5.17 -24.58 -0.13 -3.15 16 12 C -0.09 -1.76 1.87 -88.79 -0.17 -1.93 16 13 H 0.10 2.16 5.99 -51.94 -0.31 1.85 16 14 C 0.16 2.40 2.49 -67.60 -0.17 2.23 16 15 H 0.07 1.07 7.81 -51.93 -0.41 0.67 16 16 C -0.13 -1.57 4.87 -26.61 -0.13 -1.70 16 17 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16 18 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 19 C 0.11 0.92 6.32 -3.71 -0.02 0.90 16 20 N -0.61 -7.83 2.97 -165.23 -0.49 -8.32 16 21 C 0.50 7.17 7.34 -10.99 -0.08 7.09 16 22 O -0.48 -9.32 8.89 5.56 0.05 -9.27 16 23 C -0.10 -1.08 4.27 -29.04 -0.12 -1.20 16 24 C -0.06 -0.80 4.37 -104.63 -0.46 -1.26 16 25 C -0.10 -1.36 9.70 -39.59 -0.38 -1.74 16 26 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 27 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 28 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 29 C -0.11 -1.31 9.70 -39.59 -0.38 -1.70 16 30 C 0.15 3.51 5.86 -2.90 -0.02 3.50 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.10 2.98 5.87 -51.93 -0.31 2.67 16 33 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.05 1.06 7.84 -51.93 -0.41 0.66 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.97 7.15 -51.93 -0.37 0.60 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.52 5.97 -51.93 -0.31 0.21 16 44 H 0.10 0.76 7.36 -51.93 -0.38 0.38 16 45 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 46 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 47 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 49 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 50 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 51 H 0.06 1.45 5.53 -52.47 -0.29 1.16 16 52 H 0.00 0.01 7.61 -51.93 -0.39 -0.39 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -35.49 392.72 -12.04 -47.53 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.64 Total: 1.57 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.84 Total: -9.94 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.51 Total: -54.25 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.05 Total: -9.27 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.44 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.49 -12.04 -47.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039213200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.861 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds