Wall clock time and date at job start Wed Apr 1 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99699 * 2 1 4 4 N 1.46902 * 109.47013 * 127.68612 * 3 2 1 5 5 C 1.38577 * 111.00089 * 53.13703 * 4 3 2 6 6 N 1.31208 * 126.38365 * 240.61312 * 5 4 3 7 7 N 1.28511 * 110.10033 * 180.02562 * 6 5 4 8 8 C 1.31209 * 109.96403 * 359.97438 * 7 6 5 9 9 C 1.47991 * 126.46999 * 179.97438 * 8 7 6 10 10 C 1.41015 * 126.25391 * 165.05093 * 9 8 7 11 11 N 1.30635 * 108.08254 * 179.97438 * 10 9 8 12 12 N 1.39996 * 108.58674 * 0.02562 * 11 10 9 13 13 C 1.46504 * 125.86956 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46878 * 305.02526 * 13 12 11 15 15 H 1.07993 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99777 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99693 * 0.27095 * 16 14 13 18 18 Si 1.86794 * 119.99864 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47300 * 59.99801 * 18 16 14 20 20 H 1.48500 * 109.47393 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47424 * 300.00141 * 18 16 14 22 22 C 1.34820 * 108.26413 * 0.25976 * 12 11 10 23 23 N 1.36646 * 126.37912 * 60.93095 * 5 4 3 24 24 C 1.46508 * 127.18048 * 0.02562 * 23 5 4 25 25 C 1.52999 * 109.47218 * 265.64528 * 24 23 5 26 26 C 1.46899 * 110.99714 * 289.18600 * 4 3 2 27 27 C 1.53004 * 117.50043 * 357.87557 * 26 4 3 28 28 C 1.52998 * 117.50033 * 289.25209 * 26 4 3 29 29 H 1.07995 * 120.00034 * 5.64252 * 1 2 3 30 30 H 1.08007 * 119.99744 * 185.64999 * 1 2 3 31 31 H 1.07998 * 119.99953 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47578 * 7.68580 * 3 2 1 33 33 H 1.09000 * 109.46812 * 247.68587 * 3 2 1 34 34 H 1.08003 * 125.95586 * 359.96603 * 10 9 8 35 35 H 1.08993 * 109.47518 * 185.02567 * 13 12 11 36 36 H 1.08998 * 109.46978 * 65.02139 * 13 12 11 37 37 H 0.96994 * 120.00555 * 359.73292 * 17 16 14 38 38 H 1.07992 * 126.21313 * 179.69915 * 22 12 11 39 39 H 1.08994 * 109.47009 * 25.64772 * 24 23 5 40 40 H 1.09003 * 109.46806 * 145.64569 * 24 23 5 41 41 H 1.08992 * 109.47486 * 185.15913 * 25 24 23 42 42 H 1.09002 * 109.46928 * 305.15338 * 25 24 23 43 43 H 1.08999 * 109.47154 * 65.15111 * 25 24 23 44 44 H 1.09000 * 115.55033 * 143.58606 * 26 4 3 45 45 H 1.08994 * 117.49442 * 359.97438 * 27 26 4 46 46 H 1.08997 * 117.49577 * 145.02391 * 27 26 4 47 47 H 1.09001 * 117.50118 * 214.98603 * 28 26 4 48 48 H 1.09004 * 117.50092 * 0.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0416 1.3059 1.0961 5 6 3.8528 0.1838 1.0386 6 7 3.9660 -0.7428 1.9606 7 7 4.8053 -1.6402 1.5841 8 6 5.2789 -1.3411 0.3976 9 6 6.2677 -2.1230 -0.3777 10 6 6.5576 -1.9744 -1.7497 11 7 7.4830 -2.8409 -2.0648 12 7 7.8187 -3.5717 -0.9188 13 6 8.8158 -4.6426 -0.8452 14 6 8.4963 -5.6980 -1.8724 15 1 7.6363 -5.5828 -2.5154 16 6 9.3013 -6.8111 -1.9905 17 7 10.3449 -6.9544 -1.2031 18 14 8.9049 -8.1196 -3.2633 19 1 8.9282 -7.5145 -4.6192 20 1 9.9156 -9.2051 -3.1887 21 1 7.5559 -8.6793 -2.9943 22 6 7.0623 -3.1250 0.1039 23 7 4.6883 -0.1605 0.0136 24 6 4.9072 0.5738 -1.2351 25 6 3.9886 0.0147 -2.3233 26 6 2.3714 1.4047 2.3995 27 6 0.8470 1.5367 2.4020 28 6 1.7199 2.7414 2.7594 29 1 -0.5400 0.9307 -0.0920 30 1 -0.5400 -0.9308 0.0921 31 1 1.8500 -0.9353 -0.0004 32 1 1.3632 2.1290 0.1374 33 1 2.5830 1.4247 -0.9507 34 1 6.0950 -1.2676 -2.4227 35 1 8.7988 -5.0871 0.1498 36 1 9.8058 -4.2314 -1.0425 37 1 10.5505 -6.2752 -0.5419 38 1 7.0825 -3.4909 1.1197 39 1 4.6853 1.6295 -1.0794 40 1 5.9465 0.4628 -1.5444 41 1 4.2154 0.4976 -3.2737 42 1 4.1465 -1.0600 -2.4152 43 1 2.9497 0.2077 -2.0564 44 1 2.8288 0.8340 3.2078 45 1 0.3416 1.5506 1.4364 46 1 0.3014 1.0527 3.2119 47 1 1.7483 3.0500 3.8044 48 1 1.7881 3.5475 2.0288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121746708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:57 Heat of formation + Delta-G solvation = 230.176758 kcal Electronic energy + Delta-G solvation = -29930.452195 eV Core-core repulsion = 26026.220998 eV Total energy + Delta-G solvation = -3904.231197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.86340 -40.62654 -39.61331 -36.06666 -34.78642 -34.16180 -33.52350 -31.75872 -31.06105 -30.47948 -28.45779 -26.98183 -25.86477 -24.32102 -23.58484 -22.75117 -22.59603 -21.80694 -21.15102 -20.40752 -19.88070 -19.33927 -17.76630 -17.22530 -16.93512 -16.56489 -16.25011 -15.66988 -15.16961 -14.75909 -14.51461 -14.43342 -14.19733 -13.94340 -13.84743 -13.47087 -13.31545 -13.02282 -12.69262 -12.52086 -12.40528 -12.35594 -12.17125 -11.94915 -11.68724 -11.43106 -11.33827 -11.25418 -11.19919 -10.82648 -10.72895 -10.44089 -10.23039 -10.20087 -10.14238 -9.83944 -9.68853 -9.42584 -8.84926 -8.68251 -8.52625 -7.50878 -6.65412 -4.40539 1.54063 1.81490 2.16242 2.47510 2.75294 3.18244 3.30800 3.35036 3.35976 3.54489 3.55448 3.69356 4.29409 4.35101 4.35633 4.46048 4.53428 4.61182 4.65849 4.67043 4.79178 4.84127 4.94674 5.02203 5.05849 5.12358 5.15351 5.24837 5.26016 5.35090 5.35817 5.47976 5.51015 5.62734 5.76288 5.80755 5.82631 5.86826 6.04636 6.14618 6.23192 6.29043 6.42642 6.46886 6.58572 6.61854 6.92530 7.16904 7.48820 7.57629 8.20839 8.24375 8.52081 8.93543 9.27564 10.72622 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002373 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.548275 B =11798.415226 C =12039.256422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.186 4.186 3 C 0.066 3.934 4 N -0.414 5.414 5 C 0.348 3.652 6 N -0.315 5.315 7 N -0.294 5.294 8 C 0.294 3.706 9 C -0.208 4.208 10 C 0.033 3.967 11 N -0.269 5.269 12 N -0.314 5.314 13 C 0.244 3.756 14 C -0.611 4.611 15 H 0.064 0.936 16 C 0.025 3.975 17 N -0.901 5.901 18 Si 1.077 2.923 19 H -0.285 1.285 20 H -0.279 1.279 21 H -0.285 1.285 22 C 0.109 3.891 23 N -0.477 5.477 24 C 0.101 3.899 25 C -0.186 4.186 26 C 0.032 3.968 27 C -0.210 4.210 28 C -0.169 4.169 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.176 0.824 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.179 0.821 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.138 0.862 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.276 20.590 1.967 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.205 4.205 3 C -0.060 4.060 4 N -0.134 5.134 5 C -0.008 4.008 6 N -0.159 5.159 7 N -0.133 5.133 8 C 0.029 3.971 9 C -0.224 4.224 10 C -0.154 4.154 11 N -0.090 5.090 12 N -0.091 5.091 13 C 0.126 3.874 14 C -0.649 4.649 15 H 0.083 0.917 16 C -0.180 4.180 17 N -0.536 5.536 18 Si 0.903 3.097 19 H -0.211 1.211 20 H -0.204 1.204 21 H -0.212 1.212 22 C -0.046 4.046 23 N -0.173 5.173 24 C -0.022 4.022 25 C -0.244 4.244 26 C -0.076 4.076 27 C -0.248 4.248 28 C -0.208 4.208 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.193 0.807 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.196 0.804 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.155 0.845 45 H 0.128 0.872 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.773 18.240 1.651 24.835 hybrid contribution -1.319 1.980 0.169 2.385 sum -18.092 20.221 1.821 27.194 Atomic orbital electron populations 1.23826 0.95583 1.02147 0.99281 1.23522 0.96892 0.98997 1.01111 1.21873 0.93916 0.96061 0.94194 1.58730 1.19423 1.30740 1.04532 1.22115 0.96734 0.93943 0.87976 1.74451 1.17028 1.00100 1.24345 1.74344 1.10191 1.19911 1.08903 1.21783 0.97315 0.85126 0.92877 1.17190 1.06054 1.05713 0.93420 1.23929 0.98000 0.99679 0.93799 1.77348 1.16309 1.06900 1.08398 1.49232 1.28851 1.26733 1.04323 1.19910 0.85198 0.82669 0.99602 1.22051 1.15923 1.06006 1.20969 0.91725 1.25935 0.92920 0.99100 1.00057 1.70853 1.26242 1.36815 1.19722 0.83416 0.76020 0.75337 0.74891 1.21071 1.20447 1.21158 1.22545 0.92199 0.94497 0.95312 1.46125 1.33997 1.20341 1.16788 1.21967 1.02298 0.96415 0.81498 1.22477 1.00174 1.03307 0.98426 1.22511 0.92789 1.01501 0.90791 1.23862 0.93938 1.02543 1.04445 1.23160 1.03145 0.91834 1.02613 0.88167 0.88022 0.87257 0.88475 0.88689 0.80722 0.93323 0.94234 0.92207 0.80381 0.88397 0.88132 0.89870 0.90785 0.91316 0.84485 0.87182 0.88398 0.88075 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 12.44 29.01 0.36 -0.89 16 2 C -0.19 -1.71 7.08 -36.03 -0.26 -1.96 16 3 C 0.07 0.53 5.02 -4.98 -0.02 0.50 16 4 N -0.41 -4.37 4.94 -168.25 -0.83 -5.20 16 5 C 0.35 4.77 5.61 -318.62 -1.79 2.98 16 6 N -0.32 -5.29 10.77 30.35 0.33 -4.96 16 7 N -0.29 -5.39 12.21 32.60 0.40 -4.99 16 8 C 0.29 4.87 7.91 -153.84 -1.22 3.66 16 9 C -0.21 -3.64 6.05 -105.42 -0.64 -4.28 16 10 C 0.03 0.57 10.39 -17.01 -0.18 0.39 16 11 N -0.27 -5.69 12.36 30.83 0.38 -5.31 16 12 N -0.31 -6.86 3.66 -62.22 -0.23 -7.09 16 13 C 0.24 5.91 5.57 -5.19 -0.03 5.88 16 14 C -0.61 -16.66 9.23 -34.44 -0.32 -16.98 16 15 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 16 C 0.03 0.69 5.46 -17.82 -0.10 0.59 16 17 N -0.90 -25.75 13.65 55.43 0.76 -25.00 16 18 Si 1.08 24.45 29.90 -169.99 -5.08 19.36 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.11 2.08 11.40 -16.81 -0.19 1.89 16 23 N -0.48 -6.31 2.83 -114.61 -0.32 -6.63 16 24 C 0.10 0.94 5.16 -4.04 -0.02 0.92 16 25 C -0.19 -1.47 9.14 37.16 0.34 -1.13 16 26 C 0.03 0.32 5.61 -67.71 -0.38 -0.06 16 27 C -0.21 -1.61 8.54 -26.73 -0.23 -1.84 16 28 C -0.17 -1.23 10.14 -26.73 -0.27 -1.50 16 29 H 0.10 0.54 7.15 -52.49 -0.38 0.16 16 30 H 0.10 0.75 8.06 -52.48 -0.42 0.32 16 31 H 0.11 1.36 7.37 -52.49 -0.39 0.98 16 32 H 0.10 0.61 6.01 -51.93 -0.31 0.30 16 33 H 0.10 0.68 4.15 -51.93 -0.22 0.46 16 34 H 0.18 2.27 4.71 -52.48 -0.25 2.03 16 35 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 36 H 0.04 0.99 8.01 -51.93 -0.42 0.58 16 37 H 0.27 7.46 7.22 -40.82 -0.29 7.16 16 38 H 0.18 3.04 8.06 -52.49 -0.42 2.61 16 39 H 0.10 0.74 7.57 -51.93 -0.39 0.34 16 40 H 0.10 0.93 6.47 -51.93 -0.34 0.59 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.74 6.80 -51.93 -0.35 0.39 16 43 H 0.07 0.52 5.08 -51.93 -0.26 0.26 16 44 H 0.14 1.66 7.09 -51.93 -0.37 1.29 16 45 H 0.11 0.75 3.07 -51.93 -0.16 0.59 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -32.41 381.53 -10.06 -42.47 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.27 Total: 3.43 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -4.94 Total: -11.83 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.48 Total: -59.18 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.41 -10.06 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121746708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.646 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 240.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 230.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds