Wall clock time and date at job start Wed Apr 1 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99699 * 2 1 4 4 N 1.46902 * 109.47013 * 127.68612 * 3 2 1 5 5 C 1.38577 * 111.00089 * 53.13703 * 4 3 2 6 6 N 1.31208 * 126.38365 * 240.61312 * 5 4 3 7 7 N 1.28511 * 110.10033 * 180.02562 * 6 5 4 8 8 C 1.31209 * 109.96403 * 359.97438 * 7 6 5 9 9 C 1.47991 * 126.46999 * 179.97438 * 8 7 6 10 10 C 1.41015 * 126.25391 * 165.05093 * 9 8 7 11 11 N 1.30635 * 108.08254 * 179.97438 * 10 9 8 12 12 N 1.39996 * 108.58674 * 0.02562 * 11 10 9 13 13 C 1.46504 * 125.86956 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46878 * 305.02526 * 13 12 11 15 15 H 1.07993 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99777 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99693 * 0.27095 * 16 14 13 18 18 Si 1.86794 * 119.99864 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47300 * 59.99801 * 18 16 14 20 20 H 1.48500 * 109.47393 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47424 * 300.00141 * 18 16 14 22 22 C 1.34820 * 108.26413 * 0.25976 * 12 11 10 23 23 N 1.36646 * 126.37912 * 60.93095 * 5 4 3 24 24 C 1.46508 * 127.18048 * 0.02562 * 23 5 4 25 25 C 1.52999 * 109.47218 * 265.64528 * 24 23 5 26 26 C 1.46899 * 110.99714 * 289.18600 * 4 3 2 27 27 C 1.53004 * 117.50043 * 357.87557 * 26 4 3 28 28 C 1.52998 * 117.50033 * 289.25209 * 26 4 3 29 29 H 1.07995 * 120.00034 * 5.64252 * 1 2 3 30 30 H 1.08007 * 119.99744 * 185.64999 * 1 2 3 31 31 H 1.07998 * 119.99953 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47578 * 7.68580 * 3 2 1 33 33 H 1.09000 * 109.46812 * 247.68587 * 3 2 1 34 34 H 1.08003 * 125.95586 * 359.96603 * 10 9 8 35 35 H 1.08993 * 109.47518 * 185.02567 * 13 12 11 36 36 H 1.08998 * 109.46978 * 65.02139 * 13 12 11 37 37 H 0.96994 * 120.00555 * 359.73292 * 17 16 14 38 38 H 1.07992 * 126.21313 * 179.69915 * 22 12 11 39 39 H 1.08994 * 109.47009 * 25.64772 * 24 23 5 40 40 H 1.09003 * 109.46806 * 145.64569 * 24 23 5 41 41 H 1.08992 * 109.47486 * 185.15913 * 25 24 23 42 42 H 1.09002 * 109.46928 * 305.15338 * 25 24 23 43 43 H 1.08999 * 109.47154 * 65.15111 * 25 24 23 44 44 H 1.09000 * 115.55033 * 143.58606 * 26 4 3 45 45 H 1.08994 * 117.49442 * 359.97438 * 27 26 4 46 46 H 1.08997 * 117.49577 * 145.02391 * 27 26 4 47 47 H 1.09001 * 117.50118 * 214.98603 * 28 26 4 48 48 H 1.09004 * 117.50092 * 0.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0416 1.3059 1.0961 5 6 3.8528 0.1838 1.0386 6 7 3.9660 -0.7428 1.9606 7 7 4.8053 -1.6402 1.5841 8 6 5.2789 -1.3411 0.3976 9 6 6.2677 -2.1230 -0.3777 10 6 6.5576 -1.9744 -1.7497 11 7 7.4830 -2.8409 -2.0648 12 7 7.8187 -3.5717 -0.9188 13 6 8.8158 -4.6426 -0.8452 14 6 8.4963 -5.6980 -1.8724 15 1 7.6363 -5.5828 -2.5154 16 6 9.3013 -6.8111 -1.9905 17 7 10.3449 -6.9544 -1.2031 18 14 8.9049 -8.1196 -3.2633 19 1 8.9282 -7.5145 -4.6192 20 1 9.9156 -9.2051 -3.1887 21 1 7.5559 -8.6793 -2.9943 22 6 7.0623 -3.1250 0.1039 23 7 4.6883 -0.1605 0.0136 24 6 4.9072 0.5738 -1.2351 25 6 3.9886 0.0147 -2.3233 26 6 2.3714 1.4047 2.3995 27 6 0.8470 1.5367 2.4020 28 6 1.7199 2.7414 2.7594 29 1 -0.5400 0.9307 -0.0920 30 1 -0.5400 -0.9308 0.0921 31 1 1.8500 -0.9353 -0.0004 32 1 1.3632 2.1290 0.1374 33 1 2.5830 1.4247 -0.9507 34 1 6.0950 -1.2676 -2.4227 35 1 8.7988 -5.0871 0.1498 36 1 9.8058 -4.2314 -1.0425 37 1 10.5505 -6.2752 -0.5419 38 1 7.0825 -3.4909 1.1197 39 1 4.6853 1.6295 -1.0794 40 1 5.9465 0.4628 -1.5444 41 1 4.2154 0.4976 -3.2737 42 1 4.1465 -1.0600 -2.4152 43 1 2.9497 0.2077 -2.0564 44 1 2.8288 0.8340 3.2078 45 1 0.3416 1.5506 1.4364 46 1 0.3014 1.0527 3.2119 47 1 1.7483 3.0500 3.8044 48 1 1.7881 3.5475 2.0288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121746708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:55 Heat of formation + Delta-G solvation = 212.105887 kcal Electronic energy + Delta-G solvation = -29931.235806 eV Core-core repulsion = 26026.220998 eV Total energy + Delta-G solvation = -3905.014808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.99864 -42.14023 -40.38246 -37.00958 -36.15840 -35.42751 -34.40963 -33.45023 -32.29544 -31.46509 -29.81515 -28.58035 -26.75862 -25.49634 -25.13552 -23.91141 -23.22526 -22.93689 -22.14504 -21.64663 -21.11302 -20.27375 -19.29775 -18.54317 -17.88084 -17.70075 -17.51363 -16.62328 -16.38942 -16.04745 -15.76658 -15.60223 -15.31261 -15.18195 -14.78055 -14.64478 -14.29257 -14.14892 -14.08875 -13.86213 -13.57632 -13.32839 -13.23586 -13.11745 -12.77457 -12.61266 -12.43742 -12.40901 -12.01078 -11.96729 -11.94026 -11.86506 -11.45775 -11.34534 -11.24529 -11.19060 -11.00238 -10.72490 -10.43639 -10.33220 -9.78740 -8.90741 -8.74521 -6.59121 0.34444 0.98076 1.08753 1.21145 1.50711 1.51820 1.56916 1.59561 1.78855 2.21220 2.47107 2.51059 2.98662 3.00768 3.30819 3.49907 3.65969 3.69092 3.77872 3.83682 3.89139 3.96917 4.00828 4.10399 4.17882 4.20150 4.22314 4.28108 4.45921 4.50738 4.55174 4.57749 4.73211 4.78083 4.79379 4.81822 4.90444 5.02044 5.06185 5.15148 5.20526 5.26507 5.37654 5.39491 5.51494 5.57706 5.62448 5.75912 5.78091 6.13002 6.16837 6.34550 6.69318 7.16364 7.74083 8.56138 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002373 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.548275 B =11798.415226 C =12039.256422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.206 4.206 3 C 0.067 3.933 4 N -0.408 5.408 5 C 0.369 3.631 6 N -0.353 5.353 7 N -0.326 5.326 8 C 0.278 3.722 9 C -0.197 4.197 10 C 0.058 3.942 11 N -0.311 5.311 12 N -0.338 5.338 13 C 0.254 3.746 14 C -0.622 4.622 15 H 0.049 0.951 16 C -0.018 4.018 17 N -0.922 5.922 18 Si 1.119 2.881 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.272 1.272 22 C 0.098 3.902 23 N -0.470 5.470 24 C 0.091 3.909 25 C -0.181 4.181 26 C -0.002 4.002 27 C -0.198 4.198 28 C -0.147 4.147 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.215 0.785 35 H 0.050 0.950 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.189 0.811 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.124 0.876 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.039 23.448 0.541 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.225 4.225 3 C -0.058 4.058 4 N -0.129 5.129 5 C 0.012 3.988 6 N -0.197 5.197 7 N -0.166 5.166 8 C 0.010 3.990 9 C -0.212 4.212 10 C -0.130 4.130 11 N -0.131 5.131 12 N -0.116 5.116 13 C 0.135 3.865 14 C -0.660 4.660 15 H 0.067 0.933 16 C -0.218 4.218 17 N -0.558 5.558 18 Si 0.940 3.060 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.198 1.198 22 C -0.055 4.055 23 N -0.164 5.164 24 C -0.030 4.030 25 C -0.239 4.239 26 C -0.110 4.110 27 C -0.236 4.236 28 C -0.185 4.185 29 H 0.149 0.851 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.125 0.875 34 H 0.232 0.768 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.206 0.794 39 H 0.141 0.859 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.125 0.875 45 H 0.141 0.859 46 H 0.116 0.884 47 H 0.128 0.872 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.560 21.142 0.232 28.804 hybrid contribution -0.659 1.301 0.692 1.614 sum -20.220 22.443 0.924 30.222 Atomic orbital electron populations 1.24039 0.94905 1.03433 0.96474 1.23305 0.97464 0.97950 1.03820 1.22036 0.93844 0.96254 0.93650 1.58920 1.20033 1.28265 1.05677 1.22476 0.95937 0.93476 0.86883 1.74378 1.17992 1.01225 1.26108 1.74231 1.11028 1.21296 1.10029 1.21521 0.97981 0.86582 0.92870 1.17257 1.05333 1.04903 0.93701 1.24502 0.95992 0.98501 0.93990 1.77283 1.18432 1.08461 1.08952 1.48918 1.29853 1.27446 1.05362 1.19517 0.85334 0.82844 0.98776 1.22252 1.15366 1.07036 1.21361 0.93262 1.27282 0.92325 1.01094 1.01118 1.70944 1.27279 1.37022 1.20563 0.82885 0.76449 0.73330 0.73341 1.19721 1.20089 1.19768 1.22848 0.92211 0.95044 0.95419 1.46276 1.33022 1.19386 1.17759 1.22381 1.02983 0.97429 0.80241 1.22470 1.00146 1.01946 0.99295 1.22492 0.94424 1.04074 0.89978 1.23910 0.92228 1.02357 1.05109 1.23257 1.00566 0.91036 1.03619 0.85102 0.88403 0.91228 0.85619 0.87494 0.76828 0.93232 0.95736 0.92945 0.79410 0.85861 0.87849 0.86719 0.93078 0.90818 0.87452 0.85850 0.88447 0.87244 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 12.44 67.78 0.84 -0.93 16 2 C -0.21 -3.39 7.08 25.64 0.18 -3.21 16 3 C 0.07 0.87 5.02 85.56 0.43 1.30 16 4 N -0.41 -7.83 4.94 -686.22 -3.39 -11.22 16 5 C 0.37 9.93 5.61 260.02 1.46 11.39 16 6 N -0.35 -12.22 10.77 -57.89 -0.62 -12.84 16 7 N -0.33 -12.42 12.21 -50.78 -0.62 -13.04 16 8 C 0.28 9.31 7.91 136.30 1.08 10.39 16 9 C -0.20 -6.97 6.05 -20.38 -0.12 -7.09 16 10 C 0.06 1.93 10.39 85.55 0.89 2.82 16 11 N -0.31 -13.36 12.36 -56.36 -0.70 -14.06 16 12 N -0.34 -15.31 3.66 -350.78 -1.28 -16.59 16 13 C 0.25 12.89 5.57 85.63 0.48 13.37 16 14 C -0.62 -34.88 9.23 25.60 0.24 -34.65 16 15 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 16 C -0.02 -1.01 5.46 84.66 0.46 -0.55 16 17 N -0.92 -53.80 13.65 21.45 0.29 -53.50 16 18 Si 1.12 49.34 29.90 68.60 2.05 51.39 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.10 3.87 11.40 83.86 0.96 4.83 16 23 N -0.47 -12.01 2.83 -516.51 -1.46 -13.48 16 24 C 0.09 1.45 5.16 86.38 0.45 1.89 16 25 C -0.18 -2.33 9.14 71.98 0.66 -1.68 16 26 C 0.00 -0.03 5.61 44.92 0.25 0.22 16 27 C -0.20 -2.50 8.54 30.60 0.26 -2.24 16 28 C -0.15 -1.68 10.14 30.59 0.31 -1.37 16 29 H 0.13 0.76 7.15 -2.91 -0.02 0.74 16 30 H 0.10 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.07 1.75 7.37 -2.91 -0.02 1.73 16 32 H 0.13 0.94 6.01 -2.39 -0.01 0.92 16 33 H 0.11 1.11 4.15 -2.39 -0.01 1.10 16 34 H 0.22 5.15 4.71 -2.91 -0.01 5.13 16 35 H 0.05 2.47 7.93 -2.39 -0.02 2.45 16 36 H 0.02 1.30 8.01 -2.39 -0.02 1.29 16 37 H 0.26 15.06 7.22 -92.71 -0.67 14.39 16 38 H 0.19 6.79 8.06 -2.91 -0.02 6.76 16 39 H 0.12 1.39 7.57 -2.39 -0.02 1.37 16 40 H 0.10 1.63 6.47 -2.39 -0.02 1.61 16 41 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 0.92 6.80 -2.39 -0.02 0.91 16 43 H 0.07 0.90 5.08 -2.39 -0.01 0.88 16 44 H 0.11 2.67 7.09 -2.39 -0.02 2.66 16 45 H 0.12 1.18 3.07 -2.39 -0.01 1.17 16 46 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -74.35 381.53 4.18 -70.17 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.10 Total: 18.67 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 8.82 Total: -5.50 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -7.78 Total: -134.73 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.05 Total: 51.39 kcal Total: -74.35 4.18 -70.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121746708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 282.271 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 212.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds