Wall clock time and date at job start Wed Apr 1 2020 02:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00470 * 2 1 4 4 H 1.48493 * 109.47187 * 239.99634 * 3 2 1 5 5 H 1.48505 * 109.47387 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99561 * 3 2 1 7 7 C 1.38819 * 119.99388 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99509 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99946 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46989 * 179.97438 * 11 10 9 13 13 H 1.09006 * 110.91634 * 51.09716 * 12 11 10 14 14 C 1.55155 * 111.00269 * 287.19131 * 12 11 10 15 15 C 1.54328 * 102.94218 * 206.42437 * 14 12 11 16 16 N 1.47181 * 107.29374 * 22.28588 * 15 14 12 17 17 C 1.34780 * 125.73843 * 181.02949 * 16 15 14 18 18 O 1.21283 * 120.00085 * 174.97885 * 17 16 15 19 19 C 1.50695 * 119.99547 * 354.97623 * 17 16 15 20 20 C 1.50698 * 112.85321 * 297.59478 * 19 17 16 21 21 C 1.38237 * 120.00430 * 114.68821 * 20 19 17 22 22 C 1.38227 * 120.00519 * 179.74906 * 21 20 19 23 23 C 1.38239 * 119.99657 * 0.54866 * 22 21 20 24 24 C 1.38236 * 120.00082 * 359.70879 * 23 22 21 25 25 C 1.38230 * 119.99844 * 0.02562 * 24 23 22 26 26 C 1.53785 * 113.61293 * 166.40320 * 19 17 16 27 27 C 1.54055 * 86.98451 * 270.83633 * 26 19 17 28 28 C 1.53779 * 113.61553 * 68.79456 * 19 17 16 29 29 C 1.47432 * 108.61453 * 0.90755 * 16 15 14 30 30 H 0.97007 * 119.99822 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00279 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47543 * 59.99620 * 10 9 7 33 33 H 1.09002 * 109.46675 * 299.99450 * 10 9 7 34 34 H 1.08993 * 109.47872 * 59.99606 * 11 10 9 35 35 H 1.09002 * 109.46780 * 299.99254 * 11 10 9 36 36 H 1.08992 * 110.72156 * 324.78788 * 14 12 11 37 37 H 1.09003 * 110.71805 * 88.06328 * 14 12 11 38 38 H 1.08995 * 109.88555 * 141.61060 * 15 14 12 39 39 H 1.09000 * 109.88021 * 262.62263 * 15 14 12 40 40 H 1.08007 * 119.99409 * 0.02562 * 21 20 19 41 41 H 1.07996 * 120.00349 * 180.27490 * 22 21 20 42 42 H 1.07998 * 119.99705 * 179.72499 * 23 22 21 43 43 H 1.08001 * 119.99989 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.99637 * 179.97438 * 25 24 23 45 45 H 1.08995 * 113.61452 * 25.42888 * 26 19 17 46 46 H 1.08999 * 113.61656 * 156.33546 * 26 19 17 47 47 H 1.09000 * 113.61940 * 220.01971 * 27 26 19 48 48 H 1.08998 * 113.61310 * 89.10963 * 27 26 19 49 49 H 1.09005 * 113.61386 * 203.66411 * 28 19 17 50 50 H 1.08999 * 113.61762 * 334.48002 * 28 19 17 51 51 H 1.09004 * 110.36651 * 217.11234 * 29 16 15 52 52 H 1.08998 * 110.36260 * 94.90203 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6961 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0577 -3.6569 0.0017 11 6 1.0634 -4.8197 0.0008 12 6 1.8284 -6.1448 0.0013 13 1 2.5761 -6.1622 0.7943 14 6 2.4783 -6.4123 -1.3819 15 6 2.5742 -7.9519 -1.4269 16 7 1.5774 -8.4802 -0.4815 17 6 1.3595 -9.7830 -0.2136 18 8 0.5725 -10.1005 0.6529 19 6 2.0938 -10.8450 -0.9906 20 6 1.7726 -10.8204 -2.4628 21 6 2.7571 -10.5033 -3.3799 22 6 2.4638 -10.4858 -4.7306 23 6 1.1830 -10.7742 -5.1635 24 6 0.1971 -11.0861 -4.2461 25 6 0.4918 -11.1089 -2.8958 26 6 1.9972 -12.2454 -0.3625 27 6 3.2614 -11.8835 0.4402 28 6 3.6009 -10.8972 -0.6898 29 6 0.8582 -7.3459 0.1266 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0005 32 1 2.6838 -3.7143 0.8921 33 1 2.6850 -3.7150 -0.8879 34 1 0.4377 -4.7622 -0.8898 35 1 0.4358 -4.7617 0.8901 36 1 1.8416 -6.0420 -2.1853 37 1 3.4697 -5.9625 -1.4356 38 1 2.3534 -8.3079 -2.4331 39 1 3.5744 -8.2698 -1.1324 40 1 3.7567 -10.2737 -3.0414 41 1 3.2340 -10.2425 -5.4474 42 1 0.9527 -10.7562 -6.2185 43 1 -0.8036 -11.3110 -4.5843 44 1 -0.2786 -11.3522 -2.1790 45 1 1.1110 -12.3863 0.2561 46 1 2.1500 -13.0553 -1.0758 47 1 3.9715 -12.7054 0.5305 48 1 3.0495 -11.3991 1.3934 49 1 4.1914 -11.3392 -1.4924 50 1 4.0088 -9.9501 -0.3367 51 1 0.6425 -7.5517 1.1751 52 1 -0.0648 -7.1464 -0.4178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484529068.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:32 Heat of formation + Delta-G solvation = 18.702258 kcal Electronic energy + Delta-G solvation = -30011.794819 eV Core-core repulsion = 26169.640992 eV Total energy + Delta-G solvation = -3842.153827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.46529 -39.28948 -38.39063 -37.04656 -35.14807 -33.01664 -31.61871 -31.27344 -30.84607 -29.55440 -27.81565 -26.38017 -25.96737 -24.01794 -23.16293 -22.57159 -22.07225 -21.60253 -20.76257 -20.16682 -18.69265 -17.73279 -17.08877 -16.75809 -16.20923 -16.01230 -15.54080 -15.17050 -14.87212 -14.73432 -14.52371 -14.17883 -13.85595 -13.75521 -13.55333 -13.47442 -13.16922 -13.12653 -12.77137 -12.69985 -12.58061 -12.27686 -12.16930 -11.92264 -11.64045 -11.43972 -11.27807 -11.24563 -11.04778 -10.80863 -10.77601 -10.65892 -10.58691 -10.47947 -10.30949 -10.07341 -9.98693 -9.67323 -9.22431 -8.96215 -8.85526 -8.71960 -6.90936 -5.75334 -3.04032 0.99773 1.09084 2.42205 2.79030 3.43760 3.44518 3.48593 3.49946 4.05762 4.16398 4.24706 4.31994 4.45597 4.52281 4.59399 4.64603 4.70313 4.74442 4.82103 4.86300 5.02114 5.07529 5.22108 5.27532 5.29280 5.32128 5.37498 5.46946 5.55042 5.55967 5.63332 5.64591 5.69109 5.71420 5.72760 5.76879 5.81554 5.85821 5.92760 5.99885 6.10967 6.13428 6.17826 6.22062 6.26364 6.28134 6.36987 6.41254 6.66856 6.84952 6.89683 7.38107 7.69960 7.99859 8.43857 9.54524 10.13443 10.47681 11.47662 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.002181 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.909240 B =12836.003333 C =13543.389421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.156 3.844 11 C -0.115 4.115 12 C -0.093 4.093 13 H 0.085 0.915 14 C -0.127 4.127 15 C 0.096 3.904 16 N -0.609 5.609 17 C 0.558 3.442 18 O -0.538 6.538 19 C -0.065 4.065 20 C -0.063 4.063 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.141 4.141 28 C -0.127 4.127 29 C 0.108 3.892 30 H 0.256 0.744 31 H 0.383 0.617 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.096 0.904 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 -28.801 -7.872 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.103 0.897 14 C -0.165 4.165 15 C -0.027 4.027 16 N -0.342 5.342 17 C 0.346 3.654 18 O -0.415 6.415 19 C -0.068 4.068 20 C -0.064 4.064 21 C -0.131 4.131 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.178 4.178 28 C -0.164 4.164 29 C -0.014 4.014 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.114 0.886 50 H 0.094 0.906 51 H 0.097 0.903 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.279 -28.923 -7.390 30.506 hybrid contribution 0.111 1.074 -0.163 1.092 sum 6.391 -27.850 -7.553 29.555 Atomic orbital electron populations 1.69653 1.05127 1.25761 1.57761 1.24752 0.95536 0.97720 1.03083 0.86257 0.78512 0.83525 0.77838 1.21277 1.21675 1.21267 1.19187 0.90982 0.84230 1.42707 0.91273 1.42369 1.05906 1.00087 1.89516 1.20614 0.93454 0.85445 0.97685 1.21669 0.98665 0.92528 1.02501 1.22326 0.97449 0.94018 0.97474 0.89691 1.22757 1.02631 0.92995 0.98144 1.22316 0.91882 0.95130 0.93364 1.48413 1.37951 1.04944 1.42900 1.19356 0.82024 0.81457 0.82590 1.90696 1.36934 1.81106 1.32730 1.20870 0.97663 0.96431 0.91863 1.19335 0.94081 1.00117 0.92834 1.21067 0.99177 0.99994 0.92859 1.21147 0.96877 0.99994 0.95570 1.21194 0.93379 0.99581 0.99676 1.21149 0.99439 0.99804 0.93011 1.21030 0.96069 0.99575 0.95978 1.22906 0.99714 0.93480 0.98821 1.22886 0.97738 0.99348 0.97841 1.23096 0.93139 1.00784 0.99429 1.22375 0.95341 0.84503 0.99171 0.93460 0.78312 0.96549 0.96339 0.91587 0.91526 0.90147 0.89630 0.90987 0.91416 0.85656 0.85852 0.86056 0.85986 0.86150 0.89647 0.89259 0.90752 0.89809 0.88605 0.90592 0.90330 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.81 5.60 -59.91 -0.34 -19.14 16 10 C 0.16 3.06 6.16 -4.04 -0.02 3.04 16 11 C -0.12 -1.79 4.84 -26.73 -0.13 -1.92 16 12 C -0.09 -1.15 3.01 -88.47 -0.27 -1.42 16 13 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.13 -1.37 5.90 -24.90 -0.15 -1.52 16 15 C 0.10 0.93 5.77 -2.97 -0.02 0.91 16 16 N -0.61 -7.23 3.33 -170.39 -0.57 -7.80 16 17 C 0.56 7.08 6.37 -10.99 -0.07 7.01 16 18 O -0.54 -8.64 16.14 5.56 0.09 -8.55 16 19 C -0.07 -0.62 0.51 -156.00 -0.08 -0.70 16 20 C -0.06 -0.57 3.93 -104.62 -0.41 -0.98 16 21 C -0.11 -0.87 7.28 -39.59 -0.29 -1.16 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.11 -1.04 9.46 -39.58 -0.37 -1.41 16 26 C -0.11 -0.98 6.99 -25.77 -0.18 -1.16 16 27 C -0.14 -1.11 7.81 -25.77 -0.20 -1.31 16 28 C -0.13 -0.94 5.83 -25.92 -0.15 -1.09 16 29 C 0.11 1.37 6.40 -2.53 -0.02 1.35 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 34 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.68 5.75 -51.93 -0.30 0.38 16 39 H 0.07 0.56 6.33 -51.93 -0.33 0.23 16 40 H 0.13 0.76 6.38 -52.48 -0.34 0.42 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 45 H 0.08 0.89 7.34 -51.93 -0.38 0.51 16 46 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.10 0.56 6.76 -51.93 -0.35 0.20 16 50 H 0.08 0.58 6.37 -51.93 -0.33 0.25 16 51 H 0.08 1.06 7.99 -51.93 -0.41 0.64 16 52 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -33.22 406.49 -11.38 -44.60 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.59 Total: 6.88 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -3.80 Total: -11.77 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.18 Total: -54.78 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.22 -11.38 -44.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484529068.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.299 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds