Wall clock time and date at job start Wed Apr 1 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85084 * 23.79834 * 10 9 7 12 12 C 1.53776 * 113.62100 * 154.99786 * 10 9 7 13 13 C 1.53784 * 87.08223 * 89.11484 * 12 10 9 14 14 H 1.09004 * 113.61110 * 270.88808 * 13 12 10 15 15 C 1.53002 * 113.61115 * 140.06967 * 13 12 10 16 16 N 1.46504 * 109.46683 * 175.00256 * 15 13 12 17 17 C 1.34775 * 119.99991 * 179.97438 * 16 15 13 18 18 O 1.21284 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00051 * 179.97438 * 17 16 15 20 20 C 1.53004 * 109.47070 * 180.02562 * 19 17 16 21 21 H 1.09003 * 115.54854 * 29.32839 * 20 19 17 22 22 C 1.52994 * 117.49646 * 243.62357 * 20 19 17 23 23 C 1.52994 * 60.00114 * 252.51130 * 22 20 19 24 24 H 1.08995 * 117.52048 * 107.48113 * 23 22 20 25 25 C 1.53003 * 117.50208 * 252.51243 * 23 22 20 26 26 C 1.50692 * 109.47465 * 243.62410 * 25 23 22 27 27 C 1.38241 * 119.99864 * 269.72298 * 26 25 23 28 28 C 1.38234 * 120.00387 * 179.78537 * 27 26 25 29 29 C 1.38236 * 119.99355 * 0.46389 * 28 27 26 30 30 C 1.38238 * 120.00351 * 359.77173 * 29 28 27 31 31 C 1.38228 * 119.99824 * 0.02562 * 30 29 28 32 32 C 1.53780 * 87.08002 * 25.43644 * 13 12 10 33 33 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 34 34 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 35 35 H 1.08997 * 113.61963 * 203.66497 * 12 10 9 36 36 H 1.09012 * 113.61182 * 334.56883 * 12 10 9 37 37 H 1.09000 * 109.47050 * 294.99836 * 15 13 12 38 38 H 1.08998 * 109.47468 * 55.00212 * 15 13 12 39 39 H 0.97003 * 120.00051 * 359.97438 * 16 15 13 40 40 H 1.09000 * 109.47207 * 300.00099 * 19 17 16 41 41 H 1.08998 * 109.46972 * 60.00268 * 19 17 16 42 42 H 1.09000 * 117.50547 * 359.97438 * 22 20 19 43 43 H 1.09000 * 117.49939 * 145.02369 * 22 20 19 44 44 H 1.09003 * 109.46973 * 3.62058 * 25 23 22 45 45 H 1.09004 * 109.47190 * 123.61772 * 25 23 22 46 46 H 1.08009 * 119.99724 * 0.02562 * 27 26 25 47 47 H 1.07997 * 120.00251 * 180.25501 * 28 27 26 48 48 H 1.08008 * 119.99847 * 179.78744 * 29 28 27 49 49 H 1.08000 * 120.00213 * 179.97438 * 30 29 28 50 50 H 1.08003 * 119.99908 * 179.97438 * 31 30 29 51 51 H 1.08998 * 113.61586 * 220.02055 * 32 13 12 52 52 H 1.09002 * 113.61686 * 89.11237 * 32 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5281 -3.2968 -0.4047 12 6 5.5264 -2.3656 -0.5938 13 6 6.0125 -2.0236 0.8245 14 1 5.9869 -0.9573 1.0495 15 6 7.3477 -2.6759 1.1886 16 7 7.7822 -2.1978 2.5035 17 6 8.9398 -2.6407 3.0328 18 8 9.6220 -3.4348 2.4204 19 6 9.3870 -2.1485 4.3851 20 6 10.7222 -2.8009 4.7494 21 1 11.3623 -3.0636 3.9071 22 6 10.7487 -3.7210 5.9714 23 6 11.4048 -2.3405 6.0389 24 1 10.9030 -1.5727 6.6276 25 6 12.9338 -2.2846 6.0478 26 6 13.4075 -1.6960 7.3516 27 6 13.5929 -0.3309 7.4668 28 6 14.0232 0.2097 8.6641 29 6 14.2771 -0.6159 9.7434 30 6 14.0964 -1.9814 9.6268 31 6 13.6621 -2.5214 8.4308 32 6 4.7868 -2.7926 1.3451 33 1 -0.4850 0.8401 0.0004 34 1 3.8646 -0.3620 0.0007 35 1 5.9128 -3.3123 -0.9714 36 1 5.6415 -1.5468 -1.3042 37 1 7.2271 -3.7589 1.2174 38 1 8.0962 -2.4134 0.4410 39 1 7.2367 -1.5625 2.9931 40 1 9.5082 -1.0656 4.3558 41 1 8.6384 -2.4102 5.1329 42 1 9.8151 -3.8614 6.5162 43 1 11.4063 -4.5894 5.9334 44 1 13.3349 -3.2921 5.9371 45 1 13.2795 -1.6632 5.2216 46 1 13.3979 0.3137 6.6223 47 1 14.1641 1.2765 8.7552 48 1 14.6166 -0.1939 10.6779 49 1 14.2952 -2.6264 10.4699 50 1 13.5213 -3.5883 8.3396 51 1 4.3047 -2.3186 2.2001 52 1 4.9709 -3.8561 1.4976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565869538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:50 Heat of formation + Delta-G solvation = 29.414809 kcal Electronic energy + Delta-G solvation = -27549.888913 eV Core-core repulsion = 23708.199618 eV Total energy + Delta-G solvation = -3841.689296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12865 -39.67546 -38.77152 -37.73802 -34.74066 -33.27554 -33.04270 -31.26609 -30.85295 -30.02435 -27.59321 -26.72710 -25.20322 -23.52057 -22.96774 -22.35347 -21.91686 -21.41672 -20.66678 -20.21796 -18.62482 -17.70497 -17.28068 -17.01638 -16.24199 -15.83571 -15.59809 -15.51668 -15.02549 -14.87864 -14.57594 -14.39877 -14.01783 -13.80694 -13.67665 -13.44991 -13.42129 -13.07447 -12.89936 -12.80077 -12.64245 -12.37936 -12.06541 -11.77750 -11.68020 -11.56628 -11.51280 -11.38905 -11.38569 -10.95602 -10.55039 -10.36243 -10.32330 -10.21755 -10.10163 -9.84156 -9.67824 -9.53097 -9.30449 -9.07749 -9.04687 -8.94667 -7.34129 -5.83256 -3.19605 0.96821 1.01894 2.57283 3.06207 3.31434 3.33754 3.39210 3.40082 3.47396 4.21250 4.41295 4.43343 4.52378 4.55540 4.58271 4.64793 4.74604 4.84079 4.88816 4.92265 5.01552 5.04511 5.12520 5.13536 5.15313 5.24678 5.34563 5.35916 5.39084 5.41980 5.48009 5.49045 5.53189 5.66081 5.68445 5.72367 5.84315 5.88347 5.90227 6.04398 6.09562 6.09834 6.13729 6.20692 6.26273 6.33992 6.46553 6.58901 6.62766 6.71383 6.85820 7.44585 7.94615 8.15939 8.36396 9.14113 9.86319 10.05531 11.34805 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.001500 C = 0.001419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.131634 B =18656.803340 C =19721.210967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 H 0.071 0.929 12 C -0.149 4.149 13 C -0.123 4.123 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.727 5.727 17 C 0.513 3.487 18 O -0.544 6.544 19 C -0.112 4.112 20 C -0.132 4.132 21 H 0.119 0.881 22 C -0.171 4.171 23 C -0.144 4.144 24 H 0.105 0.895 25 C -0.052 4.052 26 C -0.076 4.076 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.127 4.127 30 C -0.120 4.120 31 C -0.115 4.115 32 C -0.166 4.166 33 H 0.260 0.740 34 H 0.362 0.638 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.402 0.598 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.068 0.932 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.809 -3.563 17.202 34.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.060 3.940 11 H 0.089 0.911 12 C -0.189 4.189 13 C -0.142 4.142 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.379 5.379 17 C 0.299 3.701 18 O -0.422 6.422 19 C -0.152 4.152 20 C -0.151 4.151 21 H 0.137 0.863 22 C -0.208 4.208 23 C -0.162 4.162 24 H 0.123 0.877 25 C -0.089 4.089 26 C -0.076 4.076 27 C -0.136 4.136 28 C -0.137 4.137 29 C -0.145 4.145 30 C -0.138 4.138 31 C -0.133 4.133 32 C -0.207 4.207 33 H 0.070 0.930 34 H 0.195 0.805 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.087 0.913 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 30.002 -4.187 16.721 34.601 hybrid contribution 0.228 1.643 0.396 1.706 sum 30.230 -2.544 17.117 34.832 Atomic orbital electron populations 1.69699 1.05092 1.25896 1.57182 1.24677 0.95243 0.97192 1.01871 0.86567 0.79246 0.85048 0.77761 1.21064 1.20346 1.21630 1.19118 0.80415 0.94861 1.43333 0.89015 1.42509 1.03949 1.01604 1.88928 1.21007 0.90114 0.89903 0.92934 0.91081 1.23467 0.98788 1.01578 0.95044 1.22751 0.92733 1.00016 0.98705 0.89284 1.21450 0.95601 0.98833 0.83344 1.46102 1.23155 1.47498 1.21102 1.20562 0.80758 0.81152 0.87641 1.90682 1.54427 1.34364 1.62716 1.21234 0.97134 1.01843 0.95023 1.22162 0.97413 1.02845 0.92634 0.86306 1.23222 1.02754 0.93588 1.01243 1.22388 0.94060 0.98720 1.01028 0.87676 1.20206 0.93060 1.01371 0.94265 1.19861 0.98465 0.93591 0.95647 1.21102 0.99917 0.94639 0.97919 1.21165 0.99483 0.99809 0.93270 1.21160 1.00726 0.93858 0.98789 1.21161 0.99639 0.95309 0.97659 1.21073 0.99602 0.99769 0.92857 1.23852 0.96473 0.98830 1.01520 0.92975 0.80537 0.90002 0.91449 0.91474 0.91882 0.76420 0.88517 0.88748 0.88806 0.88690 0.90707 0.90430 0.86039 0.86139 0.86258 0.86172 0.86118 0.91325 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.53 27.74 -169.99 -4.71 16.81 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.82 10.45 -15.06 -0.16 -6.97 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.73 -16.60 5.11 -52.64 -0.27 -16.87 16 10 C 0.17 3.14 4.56 -67.12 -0.31 2.84 16 11 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 12 C -0.15 -2.19 7.39 -25.92 -0.19 -2.38 16 13 C -0.12 -1.66 3.63 -89.81 -0.33 -1.99 16 14 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 16 N -0.73 -7.91 5.56 -60.29 -0.33 -8.25 16 17 C 0.51 5.96 7.83 -10.99 -0.09 5.88 16 18 O -0.54 -8.40 15.56 5.55 0.09 -8.31 16 19 C -0.11 -0.91 5.98 -27.88 -0.17 -1.08 16 20 C -0.13 -1.12 5.13 -90.62 -0.47 -1.58 16 21 H 0.12 1.22 7.30 -51.93 -0.38 0.84 16 22 C -0.17 -1.29 9.82 -26.74 -0.26 -1.55 16 23 C -0.14 -1.01 5.44 -90.62 -0.49 -1.50 16 24 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 25 C -0.05 -0.34 5.63 -27.89 -0.16 -0.50 16 26 C -0.08 -0.55 5.09 -104.63 -0.53 -1.08 16 27 C -0.12 -0.83 9.70 -39.58 -0.38 -1.22 16 28 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 29 C -0.13 -0.83 10.05 -39.58 -0.40 -1.23 16 30 C -0.12 -0.79 10.05 -39.59 -0.40 -1.19 16 31 C -0.11 -0.81 9.70 -39.59 -0.38 -1.19 16 32 C -0.17 -2.54 7.43 -25.92 -0.19 -2.74 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.36 8.06 5.76 -40.82 -0.24 7.82 16 35 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.07 0.87 7.85 -51.93 -0.41 0.47 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.40 3.60 8.47 -40.82 -0.35 3.26 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.65 7.88 -51.93 -0.41 0.24 16 42 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 43 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 44 H 0.07 0.47 7.82 -51.93 -0.41 0.06 16 45 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 46 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 47 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 49 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 50 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 52 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 LS Contribution 426.38 15.07 6.43 6.43 Total: -1.00 -32.92 426.38 -12.37 -45.30 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.93 Total: 9.89 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -5.42 Total: -17.00 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.17 Total: -53.10 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -32.92 -12.37 -45.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565869538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.711 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds