Wall clock time and date at job start Wed Apr 1 2020 02:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99904 * 2 1 4 4 H 1.48505 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47102 * 299.99971 * 3 2 1 6 6 H 1.48500 * 109.46942 * 60.00152 * 3 2 1 7 7 C 1.38807 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00131 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.47739 * 125.82177 * 346.81907 * 9 7 2 11 11 C 1.54913 * 104.84057 * 204.24479 * 10 9 7 12 12 C 1.55157 * 101.58145 * 322.90578 * 11 10 9 13 13 C 1.47025 * 125.64642 * 166.81038 * 9 7 2 14 14 H 1.09005 * 109.87778 * 59.32860 * 13 9 7 15 15 C 1.52999 * 109.88404 * 298.31945 * 13 9 7 16 16 C 1.53007 * 109.46756 * 176.68055 * 15 13 9 17 17 C 1.53000 * 109.46828 * 185.08254 * 16 15 13 18 18 N 1.46491 * 109.47265 * 179.97438 * 17 16 15 19 19 C 1.34780 * 120.00214 * 179.97438 * 18 17 16 20 20 O 1.21277 * 120.00234 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99897 * 179.97438 * 19 18 17 22 22 C 1.54185 * 110.95829 * 293.14091 * 21 19 18 23 23 C 1.51365 * 105.25360 * 215.63821 * 22 21 19 24 24 C 1.38498 * 130.39473 * 197.12235 * 23 22 21 25 25 C 1.38103 * 120.21776 * 179.72590 * 24 23 22 26 26 C 1.38256 * 119.93262 * 359.96391 * 25 24 23 27 27 C 1.38105 * 119.93626 * 0.02562 * 26 25 24 28 28 C 1.38215 * 109.75656 * 16.84181 * 23 22 21 29 29 C 1.51367 * 109.75959 * 0.23583 * 28 23 22 30 30 H 0.97005 * 120.00208 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.43725 * 85.37198 * 10 9 7 32 32 H 1.08999 * 110.29094 * 323.04618 * 10 9 7 33 33 H 1.08998 * 111.00373 * 204.83173 * 11 10 9 34 34 H 1.08997 * 111.03692 * 80.99208 * 11 10 9 35 35 H 1.08997 * 110.72121 * 277.13985 * 12 11 10 36 36 H 1.09001 * 110.72349 * 153.86279 * 12 11 10 37 37 H 1.09000 * 109.47201 * 56.68059 * 15 13 9 38 38 H 1.09000 * 109.47363 * 296.67666 * 15 13 9 39 39 H 1.08992 * 109.47012 * 65.08906 * 16 15 13 40 40 H 1.08997 * 109.47064 * 305.07678 * 16 15 13 41 41 H 1.09000 * 109.47143 * 59.99754 * 17 16 15 42 42 H 1.09002 * 109.47425 * 299.99929 * 17 16 15 43 43 H 0.97004 * 120.00225 * 0.02562 * 18 17 16 44 44 H 1.09000 * 110.72884 * 56.60354 * 21 19 18 45 45 H 1.08999 * 110.55350 * 96.53307 * 22 21 19 46 46 H 1.09010 * 109.97204 * 334.43940 * 22 21 19 47 47 H 1.07999 * 119.89257 * 359.67350 * 24 23 22 48 48 H 1.08001 * 120.03146 * 179.97438 * 25 24 23 49 49 H 1.08004 * 120.02973 * 179.97438 * 26 25 24 50 50 H 1.07993 * 119.88890 * 179.97438 * 27 26 25 51 51 H 1.08996 * 110.30267 * 101.73145 * 29 28 23 52 52 H 1.09000 * 110.30258 * 223.78135 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1168 -2.5537 0.2731 11 6 -0.2624 -4.0162 0.7627 12 6 0.7704 -4.7490 -0.1338 13 6 1.9044 -3.7116 -0.2737 14 1 2.6942 -3.9264 0.4462 15 6 2.4712 -3.7486 -1.6943 16 6 3.1439 -5.1007 -1.9399 17 6 3.8201 -5.0921 -3.3123 18 7 4.4648 -6.3863 -3.5473 19 6 5.1264 -6.6103 -4.6999 20 8 5.1885 -5.7402 -5.5425 21 6 5.7901 -7.9416 -4.9413 22 6 6.9704 -8.1533 -3.9721 23 6 8.0130 -8.9043 -4.7722 24 6 9.1179 -9.6263 -4.3527 25 6 9.9384 -10.2414 -5.2777 26 6 9.6562 -10.1374 -6.6271 27 6 8.5547 -9.4181 -7.0474 28 6 7.7309 -8.8002 -6.1212 29 6 6.4828 -7.9673 -6.3203 30 1 -0.4851 0.8401 -0.0004 31 1 -0.6971 -2.3988 -0.6365 32 1 -0.4362 -1.8599 1.0508 33 1 -1.2704 -4.3899 0.5830 34 1 0.0027 -4.1044 1.8163 35 1 0.3392 -4.9825 -1.1072 36 1 1.1331 -5.6531 0.3554 37 1 3.2043 -2.9509 -1.8139 38 1 1.6626 -3.6095 -2.4119 39 1 2.3936 -5.8907 -1.9096 40 1 3.8919 -5.2800 -1.1676 41 1 4.5704 -4.3020 -3.3428 42 1 3.0722 -4.9128 -4.0848 43 1 4.4149 -7.0825 -2.8736 44 1 5.0683 -8.7538 -4.8552 45 1 6.6572 -8.7433 -3.1108 46 1 7.3638 -7.1895 -3.6485 47 1 9.3392 -9.7077 -3.2987 48 1 10.7995 -10.8033 -4.9472 49 1 10.2970 -10.6175 -7.3519 50 1 8.3352 -9.3370 -8.1017 51 1 6.7482 -6.9562 -6.6292 52 1 5.8333 -8.4307 -7.0630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663109579.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:14 Heat of formation + Delta-G solvation = -8.954835 kcal Electronic energy + Delta-G solvation = -28588.676420 eV Core-core repulsion = 24745.323292 eV Total energy + Delta-G solvation = -3843.353128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.88269 -39.38019 -37.83806 -35.92911 -35.40672 -32.97705 -32.16760 -31.74562 -29.90047 -29.32753 -27.99309 -27.56794 -25.03930 -24.34386 -23.22912 -21.72535 -21.53924 -21.25232 -20.20736 -19.97711 -19.12188 -17.52615 -16.76058 -16.56837 -16.21065 -16.06603 -15.41481 -15.24800 -15.00303 -14.75667 -14.22778 -14.19210 -13.78060 -13.58509 -13.52920 -13.26196 -13.05925 -12.90350 -12.60206 -12.23501 -12.04899 -11.91875 -11.75707 -11.59813 -11.58167 -11.50087 -11.40288 -11.13295 -11.02160 -10.81845 -10.72670 -10.55746 -10.06176 -10.00198 -9.94702 -9.75826 -9.60014 -9.57734 -9.15733 -9.13594 -8.84213 -8.56469 -6.75613 -5.71523 -3.06271 1.00396 1.04862 2.46405 3.01903 3.40503 3.40976 3.46767 3.48667 3.92738 4.14551 4.50646 4.53111 4.60327 4.66097 4.69821 4.85090 4.93507 5.04771 5.16178 5.18060 5.22628 5.34980 5.36592 5.40314 5.46373 5.48101 5.61104 5.62261 5.68476 5.73898 5.77189 5.84815 5.86726 5.97152 6.04207 6.09144 6.12002 6.16923 6.27993 6.29776 6.35678 6.38530 6.43973 6.58161 6.65527 6.71208 6.73773 6.96840 7.18598 7.36774 7.57947 7.64908 7.83242 8.08067 8.31888 9.22974 9.84892 10.54102 11.40695 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.001736 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.194706 B =16128.622564 C =16780.495354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.075 0.925 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.117 3.883 18 N -0.726 5.726 19 C 0.519 3.481 20 O -0.537 6.537 21 C -0.111 4.111 22 C -0.071 4.071 23 C -0.098 4.098 24 C -0.105 4.105 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.108 4.108 28 C -0.091 4.091 29 C -0.069 4.069 30 H 0.251 0.749 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.123 0.877 50 H 0.121 0.879 51 H 0.101 0.899 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.035 -23.860 -8.896 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.093 0.907 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.006 4.006 18 N -0.377 5.377 19 C 0.305 3.695 20 O -0.413 6.413 21 C -0.132 4.132 22 C -0.108 4.108 23 C -0.098 4.098 24 C -0.123 4.123 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.126 4.126 28 C -0.091 4.091 29 C -0.106 4.106 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.234 0.766 44 H 0.125 0.875 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.141 0.859 50 H 0.139 0.861 51 H 0.119 0.881 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.008 -22.949 -9.484 28.510 hybrid contribution 0.440 0.541 0.231 0.735 sum 14.447 -22.407 -9.252 28.221 Atomic orbital electron populations 1.69944 1.04956 1.24933 1.56742 1.24875 0.95670 0.97732 1.02087 0.86102 0.78864 0.83949 0.77219 1.20466 1.21739 1.21818 1.19014 0.90341 0.82341 1.43545 0.90723 1.44628 1.05356 1.01016 1.81108 1.21484 0.85023 0.90210 0.98636 1.23009 0.97405 0.99778 0.98710 1.22588 0.97126 0.97099 0.99387 1.20918 0.93801 0.86962 0.92850 0.95212 1.22031 1.00055 0.94322 0.99827 1.21832 0.99670 1.00189 0.94824 1.21530 0.96857 0.84184 0.98050 1.46099 1.54950 1.17464 1.19204 1.20295 0.78449 0.89028 0.81770 1.90717 1.60102 1.46081 1.44440 1.21961 0.97793 0.96180 0.97276 1.20944 0.92212 1.00443 0.97191 1.20488 0.96297 0.98217 0.94798 1.20626 0.94280 0.97580 0.99790 1.21043 0.99614 1.00236 0.93194 1.21057 0.97291 0.99417 0.95989 1.20637 0.94886 0.97833 0.99210 1.20613 0.97009 0.97655 0.93857 1.20950 0.92971 1.00917 0.95793 0.93813 0.95941 0.91006 0.92574 0.92496 0.92064 0.92662 0.91711 0.92211 0.91702 0.91760 0.91383 0.91432 0.76620 0.87453 0.89695 0.89590 0.86132 0.85879 0.85888 0.86126 0.88125 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.54 55.49 0.59 -26.40 16 2 C -0.01 -0.20 5.47 -17.43 -0.10 -0.30 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.22 -6.15 9.75 -15.06 -0.15 -6.29 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.60 -14.90 3.14 -162.31 -0.51 -15.41 16 10 C 0.17 4.13 5.46 -2.35 -0.01 4.12 16 11 C -0.15 -2.80 7.09 -24.58 -0.17 -2.98 16 12 C -0.12 -2.07 5.61 -24.90 -0.14 -2.21 16 13 C 0.16 3.19 3.18 -66.95 -0.21 2.97 16 14 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 15 C -0.12 -2.12 4.69 -26.73 -0.13 -2.25 16 16 C -0.13 -1.58 5.07 -26.73 -0.14 -1.72 16 17 C 0.12 1.47 5.67 -4.05 -0.02 1.45 16 18 N -0.73 -7.30 5.56 -60.30 -0.33 -7.63 16 19 C 0.52 5.93 7.04 -10.98 -0.08 5.86 16 20 O -0.54 -8.47 15.51 5.56 0.09 -8.38 16 21 C -0.11 -0.92 3.45 -90.45 -0.31 -1.23 16 22 C -0.07 -0.53 6.32 -26.94 -0.17 -0.70 16 23 C -0.10 -0.85 6.14 -104.21 -0.64 -1.48 16 24 C -0.10 -0.81 10.04 -39.54 -0.40 -1.21 16 25 C -0.12 -0.88 10.05 -39.62 -0.40 -1.28 16 26 C -0.12 -0.87 10.05 -39.62 -0.40 -1.26 16 27 C -0.11 -0.88 10.04 -39.53 -0.40 -1.27 16 28 C -0.09 -0.83 6.14 -104.21 -0.64 -1.47 16 29 C -0.07 -0.63 6.10 -26.85 -0.16 -0.80 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.07 1.94 6.83 -51.93 -0.35 1.58 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.98 7.79 -51.93 -0.40 0.57 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 38 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 39 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.40 2.82 8.47 -40.82 -0.35 2.47 16 44 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.72 7.87 -51.92 -0.41 0.31 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 50 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 51 H 0.10 1.12 6.98 -51.93 -0.36 0.75 16 52 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 412.36 15.07 6.21 6.21 Total: -1.00 -32.85 412.36 -12.63 -45.48 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.98 Total: 1.01 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -4.66 Total: -12.05 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.26 Total: -49.43 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.85 -12.63 -45.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663109579.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.526 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds