Wall clock time and date at job start Wed Apr 1 2020 02:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99904 * 2 1 4 4 H 1.48505 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47102 * 299.99971 * 3 2 1 6 6 H 1.48500 * 109.46942 * 60.00152 * 3 2 1 7 7 C 1.38807 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00131 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.47739 * 125.82177 * 346.81907 * 9 7 2 11 11 C 1.54913 * 104.84057 * 204.24479 * 10 9 7 12 12 C 1.55157 * 101.58145 * 322.90578 * 11 10 9 13 13 C 1.47025 * 125.64642 * 166.81038 * 9 7 2 14 14 H 1.09005 * 109.87778 * 59.32860 * 13 9 7 15 15 C 1.52999 * 109.88404 * 298.31945 * 13 9 7 16 16 C 1.53007 * 109.46756 * 176.68055 * 15 13 9 17 17 C 1.53000 * 109.46828 * 185.08254 * 16 15 13 18 18 N 1.46491 * 109.47265 * 179.97438 * 17 16 15 19 19 C 1.34780 * 120.00214 * 179.97438 * 18 17 16 20 20 O 1.21277 * 120.00234 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99897 * 179.97438 * 19 18 17 22 22 C 1.54185 * 110.95829 * 293.14091 * 21 19 18 23 23 C 1.51365 * 105.25360 * 215.63821 * 22 21 19 24 24 C 1.38498 * 130.39473 * 197.12235 * 23 22 21 25 25 C 1.38103 * 120.21776 * 179.72590 * 24 23 22 26 26 C 1.38256 * 119.93262 * 359.96391 * 25 24 23 27 27 C 1.38105 * 119.93626 * 0.02562 * 26 25 24 28 28 C 1.38215 * 109.75656 * 16.84181 * 23 22 21 29 29 C 1.51367 * 109.75959 * 0.23583 * 28 23 22 30 30 H 0.97005 * 120.00208 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.43725 * 85.37198 * 10 9 7 32 32 H 1.08999 * 110.29094 * 323.04618 * 10 9 7 33 33 H 1.08998 * 111.00373 * 204.83173 * 11 10 9 34 34 H 1.08997 * 111.03692 * 80.99208 * 11 10 9 35 35 H 1.08997 * 110.72121 * 277.13985 * 12 11 10 36 36 H 1.09001 * 110.72349 * 153.86279 * 12 11 10 37 37 H 1.09000 * 109.47201 * 56.68059 * 15 13 9 38 38 H 1.09000 * 109.47363 * 296.67666 * 15 13 9 39 39 H 1.08992 * 109.47012 * 65.08906 * 16 15 13 40 40 H 1.08997 * 109.47064 * 305.07678 * 16 15 13 41 41 H 1.09000 * 109.47143 * 59.99754 * 17 16 15 42 42 H 1.09002 * 109.47425 * 299.99929 * 17 16 15 43 43 H 0.97004 * 120.00225 * 0.02562 * 18 17 16 44 44 H 1.09000 * 110.72884 * 56.60354 * 21 19 18 45 45 H 1.08999 * 110.55350 * 96.53307 * 22 21 19 46 46 H 1.09010 * 109.97204 * 334.43940 * 22 21 19 47 47 H 1.07999 * 119.89257 * 359.67350 * 24 23 22 48 48 H 1.08001 * 120.03146 * 179.97438 * 25 24 23 49 49 H 1.08004 * 120.02973 * 179.97438 * 26 25 24 50 50 H 1.07993 * 119.88890 * 179.97438 * 27 26 25 51 51 H 1.08996 * 110.30267 * 101.73145 * 29 28 23 52 52 H 1.09000 * 110.30258 * 223.78135 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1168 -2.5537 0.2731 11 6 -0.2624 -4.0162 0.7627 12 6 0.7704 -4.7490 -0.1338 13 6 1.9044 -3.7116 -0.2737 14 1 2.6942 -3.9264 0.4462 15 6 2.4712 -3.7486 -1.6943 16 6 3.1439 -5.1007 -1.9399 17 6 3.8201 -5.0921 -3.3123 18 7 4.4648 -6.3863 -3.5473 19 6 5.1264 -6.6103 -4.6999 20 8 5.1885 -5.7402 -5.5425 21 6 5.7901 -7.9416 -4.9413 22 6 6.9704 -8.1533 -3.9721 23 6 8.0130 -8.9043 -4.7722 24 6 9.1179 -9.6263 -4.3527 25 6 9.9384 -10.2414 -5.2777 26 6 9.6562 -10.1374 -6.6271 27 6 8.5547 -9.4181 -7.0474 28 6 7.7309 -8.8002 -6.1212 29 6 6.4828 -7.9673 -6.3203 30 1 -0.4851 0.8401 -0.0004 31 1 -0.6971 -2.3988 -0.6365 32 1 -0.4362 -1.8599 1.0508 33 1 -1.2704 -4.3899 0.5830 34 1 0.0027 -4.1044 1.8163 35 1 0.3392 -4.9825 -1.1072 36 1 1.1331 -5.6531 0.3554 37 1 3.2043 -2.9509 -1.8139 38 1 1.6626 -3.6095 -2.4119 39 1 2.3936 -5.8907 -1.9096 40 1 3.8919 -5.2800 -1.1676 41 1 4.5704 -4.3020 -3.3428 42 1 3.0722 -4.9128 -4.0848 43 1 4.4149 -7.0825 -2.8736 44 1 5.0683 -8.7538 -4.8552 45 1 6.6572 -8.7433 -3.1108 46 1 7.3638 -7.1895 -3.6485 47 1 9.3392 -9.7077 -3.2987 48 1 10.7995 -10.8033 -4.9472 49 1 10.2970 -10.6175 -7.3519 50 1 8.3352 -9.3370 -8.1017 51 1 6.7482 -6.9562 -6.6292 52 1 5.8333 -8.4307 -7.0630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663109579.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:13 Heat of formation + Delta-G solvation = -26.950531 kcal Electronic energy + Delta-G solvation = -28589.456772 eV Core-core repulsion = 24745.323292 eV Total energy + Delta-G solvation = -3844.133480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60151 -40.18803 -39.43402 -36.81939 -36.30732 -34.68607 -33.64354 -32.32157 -31.26713 -30.59864 -29.22170 -28.21483 -26.66239 -25.85005 -24.17545 -22.70554 -22.37781 -21.85859 -21.81387 -21.05776 -20.57240 -18.71312 -18.30974 -17.19764 -17.07599 -16.97508 -16.85388 -16.33682 -16.09049 -15.76775 -15.70523 -15.46625 -15.08933 -14.42664 -14.16387 -14.11983 -13.96033 -13.85209 -13.70083 -13.67420 -13.58564 -13.21858 -13.10087 -12.98358 -12.76864 -12.67016 -12.25583 -12.20646 -12.15045 -12.09885 -11.96222 -11.81829 -11.67434 -11.66086 -11.52247 -11.29935 -11.14919 -10.88518 -10.66521 -10.11990 -9.71163 -9.42843 -8.77859 -7.84887 -5.20000 0.43420 0.48317 1.43355 1.44607 1.54201 1.57181 2.14193 2.49581 2.84337 3.29775 3.33457 3.48339 3.70548 3.86532 3.97222 4.02422 4.03253 4.14161 4.17764 4.18440 4.25995 4.31236 4.33101 4.38048 4.45112 4.63500 4.64330 4.67809 4.73536 4.80318 4.83828 4.84788 4.87236 4.91061 5.01078 5.05641 5.06144 5.15666 5.18262 5.24211 5.25564 5.35677 5.43923 5.51622 5.54051 5.55287 5.63030 5.69308 5.71417 5.72158 5.80896 6.12139 6.28188 6.55912 7.13025 7.24116 7.83024 8.50255 9.26583 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.001736 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.194706 B =16128.622564 C =16780.495354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.172 3.828 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.036 0.964 15 C -0.113 4.113 16 C -0.107 4.107 17 C 0.124 3.876 18 N -0.710 5.710 19 C 0.518 3.482 20 O -0.587 6.587 21 C -0.100 4.100 22 C -0.065 4.065 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.111 4.111 29 C -0.070 4.070 30 H 0.245 0.755 31 H -0.010 1.010 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.419 0.581 44 H 0.136 0.864 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.138 0.862 48 H 0.145 0.855 49 H 0.143 0.857 50 H 0.129 0.871 51 H 0.072 0.928 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.485 -27.480 -8.016 32.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.219 1.219 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.047 3.953 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.001 4.001 18 N -0.362 5.362 19 C 0.305 3.695 20 O -0.468 6.468 21 C -0.121 4.121 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.132 4.132 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.140 4.140 28 C -0.111 4.111 29 C -0.107 4.107 30 H 0.054 0.946 31 H 0.008 0.992 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.257 0.743 44 H 0.154 0.846 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.156 0.844 48 H 0.163 0.837 49 H 0.161 0.839 50 H 0.147 0.853 51 H 0.091 0.909 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.483 -26.636 -8.575 31.980 hybrid contribution 0.049 1.633 -0.068 1.635 sum 15.532 -25.002 -8.643 30.677 Atomic orbital electron populations 1.70154 1.06266 1.24989 1.58534 1.25648 0.96517 1.00910 1.03042 0.85129 0.78333 0.80060 0.76601 1.19081 1.22291 1.21884 1.19335 0.90691 0.83757 1.41858 0.90581 1.44946 1.05798 1.02324 1.81379 1.21291 0.84526 0.93369 0.96089 1.22880 0.99699 0.95671 0.99338 1.22587 0.95006 0.97283 0.99932 1.21227 0.95119 0.85346 0.93778 0.94635 1.21831 0.98931 0.96552 0.98025 1.21627 1.00335 0.97611 0.94925 1.21252 0.96020 0.84977 0.97808 1.45882 1.53985 1.16932 1.19397 1.20869 0.77823 0.89615 0.81198 1.90703 1.61918 1.47958 1.46182 1.21946 0.98425 0.94781 0.96968 1.20941 0.91409 1.00210 0.97666 1.20697 0.97005 0.98658 0.94733 1.20919 0.93990 0.97285 1.00966 1.21398 1.00079 0.99908 0.93111 1.21370 0.97140 0.99080 0.96772 1.20887 0.95265 0.98070 0.99730 1.20713 0.97354 0.98454 0.94621 1.20895 0.93645 0.99511 0.96677 0.94571 0.99202 0.94985 0.90112 0.91781 0.91039 0.88349 0.94623 0.94149 0.89014 0.89897 0.93535 0.93035 0.74304 0.84588 0.86804 0.90762 0.84369 0.83679 0.83886 0.85321 0.90932 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.26 10.54 21.65 0.23 -58.04 16 2 C -0.07 -3.96 5.47 84.86 0.46 -3.49 16 3 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.23 -12.74 9.75 84.03 0.82 -11.92 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.62 -31.36 3.14 -667.44 -2.09 -33.45 16 10 C 0.17 8.52 5.46 86.80 0.47 8.99 16 11 C -0.14 -4.83 7.09 31.99 0.23 -4.60 16 12 C -0.11 -3.28 5.61 31.78 0.18 -3.10 16 13 C 0.15 5.70 3.18 45.34 0.14 5.85 16 14 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 15 C -0.11 -3.86 4.69 30.60 0.14 -3.72 16 16 C -0.11 -2.37 5.07 30.60 0.16 -2.21 16 17 C 0.12 2.98 5.67 86.38 0.49 3.47 16 18 N -0.71 -12.73 5.56 -463.07 -2.57 -15.31 16 19 C 0.52 11.37 7.04 87.66 0.62 11.99 16 20 O -0.59 -19.06 15.51 -3.02 -0.05 -19.10 16 21 C -0.10 -1.48 3.45 -10.68 -0.04 -1.52 16 22 C -0.07 -0.82 6.32 30.46 0.19 -0.63 16 23 C -0.11 -1.72 6.14 -19.60 -0.12 -1.85 16 24 C -0.11 -1.50 10.04 22.30 0.22 -1.28 16 25 C -0.13 -1.53 10.05 22.24 0.22 -1.30 16 26 C -0.13 -1.60 10.05 22.24 0.22 -1.38 16 27 C -0.12 -1.88 10.04 22.30 0.22 -1.65 16 28 C -0.11 -1.94 6.14 -19.60 -0.12 -2.06 16 29 C -0.07 -1.27 6.10 30.52 0.19 -1.08 16 30 H 0.24 14.63 8.31 -92.70 -0.77 13.86 16 31 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16 32 H 0.03 1.80 6.83 -2.39 -0.02 1.78 16 33 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.01 7.79 -2.39 -0.02 1.99 16 36 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.03 1.40 7.90 -2.39 -0.02 1.38 16 38 H 0.04 1.51 8.07 -2.39 -0.02 1.49 16 39 H 0.09 1.62 7.57 -2.39 -0.02 1.61 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.42 4.26 8.47 -92.71 -0.79 3.48 16 44 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 1.13 7.87 -2.38 -0.02 1.11 16 47 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 48 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 49 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 50 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 51 H 0.07 1.72 6.98 -2.39 -0.02 1.70 16 52 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -76.73 412.36 2.36 -74.37 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.11 Total: 14.11 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.71 Total: -11.50 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.44 Total: -106.79 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -76.73 2.36 -74.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663109579.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.424 kcal (2) G-P(sol) polarization free energy of solvation -76.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds