Wall clock time and date at job start Wed Apr 1 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99678 * 2 1 4 4 H 1.48498 * 109.46916 * 273.98955 * 3 2 1 5 5 H 1.48500 * 109.47434 * 33.99002 * 3 2 1 6 6 H 1.48499 * 109.46867 * 153.99458 * 3 2 1 7 7 C 1.38806 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00567 * 352.04497 * 7 2 1 9 9 N 1.36940 * 119.99692 * 172.04477 * 7 2 1 10 10 C 1.47423 * 125.65165 * 307.09015 * 9 7 2 11 11 C 1.54909 * 104.83288 * 155.90874 * 10 9 7 12 12 C 1.55154 * 101.58174 * 37.01184 * 11 10 9 13 13 C 1.47025 * 125.64526 * 127.13308 * 9 7 2 14 14 H 1.08999 * 109.88314 * 300.59382 * 13 9 7 15 15 C 1.53001 * 109.88548 * 61.60821 * 13 9 7 16 16 C 1.53004 * 109.46790 * 289.46294 * 15 13 9 17 17 C 1.52999 * 109.47253 * 186.08968 * 16 15 13 18 18 N 1.46498 * 109.47245 * 179.97438 * 17 16 15 19 19 C 1.34773 * 119.99923 * 180.02562 * 18 17 16 20 20 O 1.21282 * 120.00055 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99970 * 180.02562 * 19 18 17 22 22 C 1.54350 * 110.82249 * 179.97438 * 21 19 18 23 23 C 1.51366 * 105.25519 * 215.17659 * 22 21 19 24 24 C 1.38298 * 130.55397 * 197.15178 * 23 22 21 25 25 C 1.38107 * 120.28394 * 180.02562 * 24 23 22 26 26 C 1.38253 * 119.93206 * 0.03002 * 25 24 23 27 27 C 1.38099 * 119.93788 * 0.02562 * 26 25 24 28 28 C 1.38455 * 109.62786 * 17.23619 * 23 22 21 29 29 C 1.51368 * 109.79608 * 359.95677 * 28 23 22 30 30 H 0.97004 * 120.00133 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36532 * 274.74493 * 10 9 7 32 32 H 1.08999 * 110.36281 * 37.06918 * 10 9 7 33 33 H 1.09001 * 111.00293 * 155.08328 * 11 10 9 34 34 H 1.08994 * 111.00204 * 278.89619 * 11 10 9 35 35 H 1.09004 * 110.72079 * 206.13650 * 12 11 10 36 36 H 1.09000 * 110.72254 * 82.85998 * 12 11 10 37 37 H 1.08997 * 109.47638 * 169.46633 * 15 13 9 38 38 H 1.09004 * 109.47178 * 49.45703 * 15 13 9 39 39 H 1.09002 * 109.47269 * 66.09252 * 16 15 13 40 40 H 1.08999 * 109.47129 * 306.09617 * 16 15 13 41 41 H 1.09002 * 109.46751 * 59.99967 * 17 16 15 42 42 H 1.09003 * 109.47151 * 300.00126 * 17 16 15 43 43 H 0.97003 * 120.00358 * 0.02562 * 18 17 16 44 44 H 1.09005 * 110.72632 * 303.40093 * 21 19 18 45 45 H 1.08996 * 110.29927 * 334.15375 * 22 21 19 46 46 H 1.09000 * 110.29832 * 96.20813 * 22 21 19 47 47 H 1.08000 * 119.82631 * 0.06693 * 24 23 22 48 48 H 1.07998 * 120.03248 * 180.02562 * 25 24 23 49 49 H 1.08004 * 120.02980 * 179.97438 * 26 25 24 50 50 H 1.08003 * 119.89341 * 179.97438 * 27 26 25 51 51 H 1.08997 * 110.30641 * 223.91087 * 29 28 23 52 52 H 1.09002 * 110.38249 * 101.79845 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4132 2.0952 -1.3967 5 1 1.4923 2.6269 0.7827 6 1 3.5873 1.4174 0.6139 7 6 2.0102 -1.2021 0.0005 8 1 1.4782 -2.1328 0.1304 9 7 3.3697 -1.2078 -0.1636 10 6 4.1052 -0.5572 -1.2632 11 6 5.5262 -0.3099 -0.6982 12 6 5.7455 -1.5827 0.1615 13 6 4.3376 -1.8645 0.7273 14 1 4.2514 -1.4557 1.7340 15 6 4.0800 -3.3724 0.7543 16 6 2.7761 -3.6537 1.5039 17 6 2.5953 -5.1645 1.6636 18 7 1.3472 -5.4338 2.3818 19 6 0.9786 -6.7042 2.6395 20 8 1.6800 -7.6246 2.2764 21 6 -0.3056 -6.9812 3.3778 22 6 -0.5193 -8.4994 3.5565 23 6 -2.0144 -8.7071 3.4442 24 6 -2.8047 -9.7766 3.8243 25 6 -4.1699 -9.7416 3.6182 26 6 -4.7505 -8.6338 3.0291 27 6 -3.9642 -7.5646 2.6473 28 6 -2.5950 -7.5977 2.8535 29 6 -1.5296 -6.5719 2.5312 30 1 -0.4850 0.8401 0.0004 31 1 4.1513 -1.2158 -2.1306 32 1 3.6325 0.3884 -1.5285 33 1 6.2609 -0.2494 -1.5011 34 1 5.5503 0.5881 -0.0809 35 1 6.4528 -1.3867 0.9674 36 1 6.0854 -2.4127 -0.4580 37 1 4.9053 -3.8730 1.2607 38 1 3.9999 -3.7458 -0.2666 39 1 1.9375 -3.2450 0.9401 40 1 2.8146 -3.1862 2.4878 41 1 3.4339 -5.5732 2.2274 42 1 2.5568 -5.6319 0.6796 43 1 0.7860 -4.6976 2.6719 44 1 -0.3140 -6.4723 4.3417 45 1 -0.0009 -9.0493 2.7711 46 1 -0.1658 -8.8181 4.5371 47 1 -2.3519 -10.6422 4.2847 48 1 -4.7832 -10.5788 3.9170 49 1 -5.8179 -8.6050 2.8668 50 1 -4.4185 -6.6998 2.1868 51 1 -1.8674 -5.5745 2.8123 52 1 -1.2824 -6.6018 1.4700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663109580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:18 Heat of formation + Delta-G solvation = -5.230755 kcal Electronic energy + Delta-G solvation = -29230.588493 eV Core-core repulsion = 25387.396853 eV Total energy + Delta-G solvation = -3843.191640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.65922 -39.16736 -38.08739 -35.71999 -35.17381 -32.63971 -32.53927 -31.56873 -29.93881 -29.71865 -28.24426 -27.39719 -25.06679 -24.25905 -23.08815 -21.51435 -21.33468 -21.06497 -20.35917 -19.75948 -19.24066 -17.30297 -16.97524 -16.36777 -16.17536 -15.95516 -15.77032 -15.10971 -14.96182 -14.56950 -14.34526 -14.06657 -13.47311 -13.36136 -13.29034 -13.06839 -12.94915 -12.77001 -12.62398 -12.48061 -12.24033 -12.04902 -11.98835 -11.41430 -11.36561 -11.32876 -11.29313 -11.19781 -10.93637 -10.92840 -10.81339 -10.59534 -10.30354 -10.05575 -9.96035 -9.87602 -9.61216 -9.38026 -8.96996 -8.86855 -8.64756 -8.55583 -6.49796 -6.00659 -3.69787 1.18402 1.23562 2.68244 3.28781 3.29608 3.41331 3.49407 3.59487 4.14812 4.36309 4.47751 4.76833 4.82121 4.83686 4.89409 5.03557 5.04757 5.15221 5.17624 5.28170 5.35010 5.45171 5.46693 5.53984 5.57422 5.59154 5.60996 5.64115 5.69376 5.83849 5.89936 5.96232 6.01571 6.03691 6.07252 6.15556 6.19528 6.27908 6.32390 6.34371 6.35429 6.47290 6.49414 6.50516 6.62591 6.72053 6.77122 6.83915 6.90349 7.01520 7.10122 7.64627 8.06294 8.31088 8.44202 8.83957 9.59947 10.31465 11.08053 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.002236 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.262795 B =12516.841250 C =14081.081187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.044 3.956 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.263 1.263 7 C -0.255 4.255 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.119 3.881 11 C -0.139 4.139 12 C -0.126 4.126 13 C 0.155 3.845 14 H 0.040 0.960 15 C -0.112 4.112 16 C -0.141 4.141 17 C 0.120 3.880 18 N -0.721 5.721 19 C 0.521 3.479 20 O -0.546 6.546 21 C -0.111 4.111 22 C -0.067 4.067 23 C -0.093 4.093 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.104 4.104 28 C -0.094 4.094 29 C -0.073 4.073 30 H 0.264 0.736 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.405 0.595 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.122 0.878 51 H 0.088 0.912 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -13.903 7.651 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.158 4.158 3 Si 0.721 3.279 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.187 1.187 7 C -0.383 4.383 8 H 0.103 0.897 9 N -0.329 5.329 10 C -0.005 4.005 11 C -0.177 4.177 12 C -0.164 4.164 13 C 0.049 3.951 14 H 0.058 0.942 15 C -0.152 4.152 16 C -0.179 4.179 17 C -0.004 4.004 18 N -0.371 5.371 19 C 0.306 3.694 20 O -0.424 6.424 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.093 4.093 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.122 4.122 28 C -0.094 4.094 29 C -0.110 4.110 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.239 0.761 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.097 0.903 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.140 0.860 51 H 0.106 0.894 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.790 -14.443 7.395 16.324 hybrid contribution 0.015 1.412 0.078 1.415 sum -1.775 -13.030 7.473 15.125 Atomic orbital electron populations 1.69767 1.06034 1.26956 1.51687 1.25874 0.95133 0.98584 0.96227 0.86601 0.80490 0.83497 0.77347 1.21427 1.23032 1.18723 1.18591 0.79124 0.92868 1.47741 0.89709 1.44568 1.02123 1.63264 1.22947 1.21854 0.90482 0.96125 0.92071 1.22795 0.97891 0.97934 0.99109 1.22578 0.97225 0.97601 0.99002 1.21113 0.88250 0.91367 0.94358 0.94240 1.21851 0.95547 0.98069 0.99774 1.22188 1.01786 0.92049 1.01832 1.21519 0.84918 0.97838 0.96085 1.46095 1.25108 1.07588 1.58343 1.20268 0.86752 0.82925 0.79440 1.90674 1.54706 1.44060 1.52941 1.21984 0.92818 0.98226 1.00179 1.20925 0.91395 0.94378 1.03730 1.20624 0.95698 0.94470 0.98511 1.20547 0.93431 0.97873 1.00824 1.21025 0.94612 0.98406 0.99929 1.21035 0.99717 0.93784 0.99540 1.20672 0.92343 0.98993 1.00238 1.20590 0.93801 0.96230 0.98780 1.20996 0.91103 0.98274 1.00653 0.92606 0.95539 0.94369 0.92011 0.91846 0.92103 0.91742 0.93485 0.92239 0.87375 0.92184 0.92417 0.91961 0.76067 0.87497 0.88250 0.90347 0.86283 0.86005 0.85927 0.85968 0.89387 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.97 55.49 0.78 -25.41 16 2 C 0.04 1.20 5.50 -17.43 -0.10 1.11 16 3 Si 0.89 21.83 25.12 -169.99 -4.27 17.56 16 4 H -0.29 -7.01 7.00 56.52 0.40 -6.61 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.26 -6.25 6.44 56.52 0.36 -5.89 16 7 C -0.26 -6.61 9.35 -15.06 -0.14 -6.75 16 8 H 0.09 2.30 5.18 -52.49 -0.27 2.03 16 9 N -0.60 -13.55 2.38 -162.57 -0.39 -13.93 16 10 C 0.12 2.47 6.19 -2.53 -0.02 2.46 16 11 C -0.14 -2.37 7.08 -24.58 -0.17 -2.55 16 12 C -0.13 -2.00 6.47 -24.90 -0.16 -2.16 16 13 C 0.16 2.91 3.21 -66.95 -0.22 2.70 16 14 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 15 C -0.11 -1.86 4.69 -26.73 -0.13 -1.99 16 16 C -0.14 -2.32 4.86 -26.73 -0.13 -2.45 16 17 C 0.12 1.78 5.67 -4.04 -0.02 1.76 16 18 N -0.72 -9.75 5.56 -60.29 -0.33 -10.08 16 19 C 0.52 7.25 7.06 -10.99 -0.08 7.17 16 20 O -0.55 -9.47 15.51 5.56 0.09 -9.38 16 21 C -0.11 -1.21 3.46 -90.36 -0.31 -1.53 16 22 C -0.07 -0.74 6.09 -26.85 -0.16 -0.90 16 23 C -0.09 -1.03 6.15 -104.19 -0.64 -1.67 16 24 C -0.11 -1.07 10.03 -39.61 -0.40 -1.47 16 25 C -0.12 -1.10 10.05 -39.62 -0.40 -1.49 16 26 C -0.12 -1.13 10.05 -39.63 -0.40 -1.53 16 27 C -0.10 -1.08 10.04 -39.54 -0.40 -1.48 16 28 C -0.09 -1.06 6.14 -104.12 -0.64 -1.70 16 29 C -0.07 -0.79 6.31 -26.85 -0.17 -0.96 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.86 4.62 -51.93 -0.24 0.62 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.13 7.54 -51.93 -0.39 0.73 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.11 2.13 4.50 -51.93 -0.23 1.90 16 40 H 0.06 0.98 8.11 -51.93 -0.42 0.55 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.40 4.89 8.47 -40.82 -0.35 4.54 16 44 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.10 1.26 6.99 -51.93 -0.36 0.90 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 49 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 50 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 51 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.09 1.05 7.89 -51.93 -0.41 0.64 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -30.90 402.73 -11.34 -42.24 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -8.60 Total: 6.37 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -4.67 Total: -13.43 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.05 Total: -49.42 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.27 Total: 17.56 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.90 -11.34 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663109580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.009 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds