Wall clock time and date at job start Wed Apr 1 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99678 * 2 1 4 4 H 1.48498 * 109.46916 * 273.98955 * 3 2 1 5 5 H 1.48500 * 109.47434 * 33.99002 * 3 2 1 6 6 H 1.48499 * 109.46867 * 153.99458 * 3 2 1 7 7 C 1.38806 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00567 * 352.04497 * 7 2 1 9 9 N 1.36940 * 119.99692 * 172.04477 * 7 2 1 10 10 C 1.47423 * 125.65165 * 307.09015 * 9 7 2 11 11 C 1.54909 * 104.83288 * 155.90874 * 10 9 7 12 12 C 1.55154 * 101.58174 * 37.01184 * 11 10 9 13 13 C 1.47025 * 125.64526 * 127.13308 * 9 7 2 14 14 H 1.08999 * 109.88314 * 300.59382 * 13 9 7 15 15 C 1.53001 * 109.88548 * 61.60821 * 13 9 7 16 16 C 1.53004 * 109.46790 * 289.46294 * 15 13 9 17 17 C 1.52999 * 109.47253 * 186.08968 * 16 15 13 18 18 N 1.46498 * 109.47245 * 179.97438 * 17 16 15 19 19 C 1.34773 * 119.99923 * 180.02562 * 18 17 16 20 20 O 1.21282 * 120.00055 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99970 * 180.02562 * 19 18 17 22 22 C 1.54350 * 110.82249 * 179.97438 * 21 19 18 23 23 C 1.51366 * 105.25519 * 215.17659 * 22 21 19 24 24 C 1.38298 * 130.55397 * 197.15178 * 23 22 21 25 25 C 1.38107 * 120.28394 * 180.02562 * 24 23 22 26 26 C 1.38253 * 119.93206 * 0.03002 * 25 24 23 27 27 C 1.38099 * 119.93788 * 0.02562 * 26 25 24 28 28 C 1.38455 * 109.62786 * 17.23619 * 23 22 21 29 29 C 1.51368 * 109.79608 * 359.95677 * 28 23 22 30 30 H 0.97004 * 120.00133 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36532 * 274.74493 * 10 9 7 32 32 H 1.08999 * 110.36281 * 37.06918 * 10 9 7 33 33 H 1.09001 * 111.00293 * 155.08328 * 11 10 9 34 34 H 1.08994 * 111.00204 * 278.89619 * 11 10 9 35 35 H 1.09004 * 110.72079 * 206.13650 * 12 11 10 36 36 H 1.09000 * 110.72254 * 82.85998 * 12 11 10 37 37 H 1.08997 * 109.47638 * 169.46633 * 15 13 9 38 38 H 1.09004 * 109.47178 * 49.45703 * 15 13 9 39 39 H 1.09002 * 109.47269 * 66.09252 * 16 15 13 40 40 H 1.08999 * 109.47129 * 306.09617 * 16 15 13 41 41 H 1.09002 * 109.46751 * 59.99967 * 17 16 15 42 42 H 1.09003 * 109.47151 * 300.00126 * 17 16 15 43 43 H 0.97003 * 120.00358 * 0.02562 * 18 17 16 44 44 H 1.09005 * 110.72632 * 303.40093 * 21 19 18 45 45 H 1.08996 * 110.29927 * 334.15375 * 22 21 19 46 46 H 1.09000 * 110.29832 * 96.20813 * 22 21 19 47 47 H 1.08000 * 119.82631 * 0.06693 * 24 23 22 48 48 H 1.07998 * 120.03248 * 180.02562 * 25 24 23 49 49 H 1.08004 * 120.02980 * 179.97438 * 26 25 24 50 50 H 1.08003 * 119.89341 * 179.97438 * 27 26 25 51 51 H 1.08997 * 110.30641 * 223.91087 * 29 28 23 52 52 H 1.09002 * 110.38249 * 101.79845 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4132 2.0952 -1.3967 5 1 1.4923 2.6269 0.7827 6 1 3.5873 1.4174 0.6139 7 6 2.0102 -1.2021 0.0005 8 1 1.4782 -2.1328 0.1304 9 7 3.3697 -1.2078 -0.1636 10 6 4.1052 -0.5572 -1.2632 11 6 5.5262 -0.3099 -0.6982 12 6 5.7455 -1.5827 0.1615 13 6 4.3376 -1.8645 0.7273 14 1 4.2514 -1.4557 1.7340 15 6 4.0800 -3.3724 0.7543 16 6 2.7761 -3.6537 1.5039 17 6 2.5953 -5.1645 1.6636 18 7 1.3472 -5.4338 2.3818 19 6 0.9786 -6.7042 2.6395 20 8 1.6800 -7.6246 2.2764 21 6 -0.3056 -6.9812 3.3778 22 6 -0.5193 -8.4994 3.5565 23 6 -2.0144 -8.7071 3.4442 24 6 -2.8047 -9.7766 3.8243 25 6 -4.1699 -9.7416 3.6182 26 6 -4.7505 -8.6338 3.0291 27 6 -3.9642 -7.5646 2.6473 28 6 -2.5950 -7.5977 2.8535 29 6 -1.5296 -6.5719 2.5312 30 1 -0.4850 0.8401 0.0004 31 1 4.1513 -1.2158 -2.1306 32 1 3.6325 0.3884 -1.5285 33 1 6.2609 -0.2494 -1.5011 34 1 5.5503 0.5881 -0.0809 35 1 6.4528 -1.3867 0.9674 36 1 6.0854 -2.4127 -0.4580 37 1 4.9053 -3.8730 1.2607 38 1 3.9999 -3.7458 -0.2666 39 1 1.9375 -3.2450 0.9401 40 1 2.8146 -3.1862 2.4878 41 1 3.4339 -5.5732 2.2274 42 1 2.5568 -5.6319 0.6796 43 1 0.7860 -4.6976 2.6719 44 1 -0.3140 -6.4723 4.3417 45 1 -0.0009 -9.0493 2.7711 46 1 -0.1658 -8.8181 4.5371 47 1 -2.3519 -10.6422 4.2847 48 1 -4.7832 -10.5788 3.9170 49 1 -5.8179 -8.6050 2.8668 50 1 -4.4185 -6.6998 2.1868 51 1 -1.8674 -5.5745 2.8123 52 1 -1.2824 -6.6018 1.4700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663109580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:17 Heat of formation + Delta-G solvation = -21.627214 kcal Electronic energy + Delta-G solvation = -29231.299497 eV Core-core repulsion = 25387.396853 eV Total energy + Delta-G solvation = -3843.902644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59751 -40.19557 -39.60116 -36.75979 -36.28199 -34.59309 -33.85517 -32.34293 -31.69923 -30.71438 -29.47908 -28.24093 -26.51624 -25.83960 -24.16034 -22.82121 -22.37027 -21.83389 -21.72455 -21.03121 -20.65876 -18.87042 -18.29136 -17.82400 -17.18367 -16.94199 -16.90603 -16.41197 -16.09293 -15.81635 -15.52729 -15.33222 -14.96302 -14.65090 -14.24580 -14.16992 -14.06021 -13.98951 -13.89111 -13.72756 -13.54829 -13.39402 -13.20006 -13.03473 -12.95503 -12.46457 -12.41202 -12.24279 -12.19102 -12.11781 -12.10924 -11.88810 -11.67940 -11.60363 -11.38039 -11.35065 -11.10648 -10.83694 -10.61142 -10.09437 -9.72982 -9.43715 -8.39533 -8.03871 -5.75653 0.41713 0.47579 1.32446 1.40003 1.53081 1.55053 2.18324 2.45216 2.83258 3.13823 3.29226 3.45287 3.46756 3.84196 3.91945 4.01119 4.04849 4.11011 4.16627 4.17530 4.19167 4.27065 4.29363 4.32609 4.49775 4.59034 4.62175 4.66626 4.70231 4.74945 4.81840 4.83098 4.85277 4.87766 4.94939 4.99955 5.03971 5.04970 5.16360 5.19987 5.22330 5.25532 5.30763 5.44774 5.47701 5.54461 5.57410 5.61511 5.67811 5.70887 6.05035 6.11028 6.45189 6.53009 6.99136 7.17909 7.58134 8.36814 9.02472 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.002236 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.262795 B =12516.841250 C =14081.081187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.012 4.012 3 Si 0.943 3.057 4 H -0.288 1.288 5 H -0.311 1.311 6 H -0.250 1.250 7 C -0.236 4.236 8 H 0.066 0.934 9 N -0.619 5.619 10 C 0.108 3.892 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.146 3.854 14 H 0.029 0.971 15 C -0.107 4.107 16 C -0.128 4.128 17 C 0.130 3.870 18 N -0.718 5.718 19 C 0.521 3.479 20 O -0.581 6.581 21 C -0.103 4.103 22 C -0.064 4.064 23 C -0.108 4.108 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.119 4.119 28 C -0.113 4.113 29 C -0.070 4.070 30 H 0.261 0.739 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.412 0.588 44 H 0.131 0.869 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.136 0.864 48 H 0.149 0.851 49 H 0.146 0.854 50 H 0.130 0.870 51 H 0.098 0.902 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.546 -14.636 8.692 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.209 4.209 3 Si 0.772 3.228 4 H -0.215 1.215 5 H -0.240 1.240 6 H -0.174 1.174 7 C -0.366 4.366 8 H 0.083 0.917 9 N -0.346 5.346 10 C -0.016 4.016 11 C -0.169 4.169 12 C -0.153 4.153 13 C 0.041 3.959 14 H 0.047 0.953 15 C -0.146 4.146 16 C -0.166 4.166 17 C 0.006 3.994 18 N -0.368 5.368 19 C 0.308 3.692 20 O -0.462 6.462 21 C -0.124 4.124 22 C -0.101 4.101 23 C -0.108 4.108 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.137 4.137 28 C -0.113 4.113 29 C -0.108 4.108 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.248 0.752 44 H 0.149 0.851 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.154 0.846 48 H 0.167 0.833 49 H 0.164 0.836 50 H 0.148 0.852 51 H 0.116 0.884 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.239 -15.171 8.440 17.362 hybrid contribution -0.475 1.523 -0.284 1.621 sum -0.714 -13.648 8.156 15.915 Atomic orbital electron populations 1.69883 1.07391 1.27232 1.54746 1.26461 0.95655 1.01408 0.97362 0.85757 0.79759 0.80218 0.77037 1.21507 1.23997 1.17357 1.18632 0.81012 0.92041 1.44874 0.91708 1.44749 1.01563 1.63707 1.24607 1.21995 0.92612 0.95000 0.91989 1.22768 0.95850 0.98229 1.00059 1.22585 0.95464 0.97531 0.99769 1.21327 0.89335 0.91986 0.93254 0.95309 1.21778 0.96417 0.96895 0.99532 1.21963 1.00590 0.92827 1.01199 1.21318 0.85849 0.96492 0.95714 1.46082 1.24840 1.07978 1.57924 1.20740 0.87249 0.82305 0.78860 1.90654 1.56055 1.45006 1.54475 1.21979 0.91003 0.98698 1.00691 1.20859 0.91579 0.93961 1.03687 1.20728 0.95592 0.95119 0.99412 1.20850 0.93959 0.98018 1.00625 1.21393 0.94561 0.99059 0.99010 1.21378 1.00883 0.93346 0.98747 1.20913 0.92228 0.99931 1.00610 1.20704 0.94339 0.96521 0.99743 1.20946 0.91217 0.99014 0.99577 0.92996 0.95169 0.96412 0.88693 0.92475 0.89383 0.89898 0.90342 0.93259 0.91004 0.92006 0.91517 0.93375 0.75222 0.85139 0.90387 0.88985 0.84598 0.83347 0.83646 0.85242 0.88404 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.95 13.97 21.65 0.30 -56.65 16 2 C -0.01 -0.65 5.50 84.86 0.47 -0.19 16 3 Si 0.94 45.70 25.12 68.60 1.72 47.42 16 4 H -0.29 -13.81 7.00 99.48 0.70 -13.11 16 5 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 6 H -0.25 -11.39 6.44 99.48 0.64 -10.75 16 7 C -0.24 -12.50 9.35 84.03 0.79 -11.72 16 8 H 0.07 3.68 5.18 -2.91 -0.02 3.67 16 9 N -0.62 -27.48 2.38 -668.25 -1.59 -29.07 16 10 C 0.11 4.33 6.19 86.86 0.54 4.87 16 11 C -0.13 -4.00 7.08 31.99 0.23 -3.78 16 12 C -0.12 -3.19 6.47 31.78 0.21 -2.99 16 13 C 0.15 5.20 3.21 45.34 0.15 5.34 16 14 H 0.03 1.10 8.10 -2.39 -0.02 1.08 16 15 C -0.11 -3.35 4.69 30.60 0.14 -3.21 16 16 C -0.13 -4.21 4.86 30.60 0.15 -4.06 16 17 C 0.13 3.86 5.67 86.38 0.49 4.35 16 18 N -0.72 -19.58 5.56 -463.06 -2.57 -22.15 16 19 C 0.52 14.66 7.06 87.66 0.62 15.28 16 20 O -0.58 -20.51 15.51 -3.04 -0.05 -20.56 16 21 C -0.10 -2.24 3.46 -10.62 -0.04 -2.27 16 22 C -0.06 -1.40 6.09 30.52 0.19 -1.21 16 23 C -0.11 -2.36 6.15 -19.59 -0.12 -2.48 16 24 C -0.12 -2.14 10.03 22.25 0.22 -1.91 16 25 C -0.12 -1.95 10.05 22.24 0.22 -1.73 16 26 C -0.13 -2.12 10.05 22.24 0.22 -1.89 16 27 C -0.12 -2.39 10.04 22.30 0.22 -2.17 16 28 C -0.11 -2.54 6.14 -19.54 -0.12 -2.66 16 29 C -0.07 -1.56 6.31 30.52 0.19 -1.36 16 30 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.02 0.78 4.62 -2.39 -0.01 0.77 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.83 7.54 -2.39 -0.02 1.81 16 35 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.08 2.02 7.85 -2.39 -0.02 2.00 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.94 4.50 -2.39 -0.01 2.93 16 40 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.41 10.08 8.47 -92.71 -0.79 9.30 16 44 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.08 2.06 6.99 -2.39 -0.02 2.04 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 48 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 49 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 50 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 51 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.07 1.78 7.89 -2.39 -0.02 1.76 16 Total: -1.00 -68.76 402.73 2.63 -66.13 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.05 Total: 28.68 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.76 Total: -13.79 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -3.86 Total: -107.88 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.72 Total: 47.42 kcal Total: -68.76 2.63 -66.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663109580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.505 kcal (2) G-P(sol) polarization free energy of solvation -68.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds