Wall clock time and date at job start Wed Apr 1 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99963 * 2 1 4 4 H 1.48507 * 109.46896 * 239.99796 * 3 2 1 5 5 H 1.48501 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47212 * 120.00048 * 3 2 1 7 7 C 1.38809 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00414 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.65230 * 359.96350 * 9 7 2 11 11 C 1.54319 * 107.27361 * 181.09200 * 10 9 7 12 12 C 1.55161 * 102.94121 * 22.18955 * 11 10 9 13 13 H 1.09000 * 111.03636 * 82.58666 * 12 11 10 14 14 C 1.53000 * 111.00123 * 206.42147 * 12 11 10 15 15 N 1.46499 * 109.46840 * 178.64865 * 14 12 11 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47064 * 180.02562 * 18 16 15 20 20 C 1.38237 * 119.99773 * 269.72267 * 19 18 16 21 21 C 1.38233 * 119.99711 * 179.74039 * 20 19 18 22 22 C 1.38234 * 120.00098 * 0.53683 * 21 20 19 23 23 C 1.50702 * 119.99902 * 179.76294 * 22 21 20 24 24 C 1.53782 * 113.61678 * 37.47704 * 23 22 21 25 25 C 1.53780 * 87.08135 * 220.01794 * 24 23 22 26 26 C 1.53778 * 113.61599 * 299.97421 * 23 22 21 27 27 C 1.38239 * 119.99938 * 359.74247 * 22 21 20 28 28 C 1.38230 * 119.99880 * 359.97438 * 27 22 21 29 29 C 1.47426 * 125.64854 * 179.97438 * 9 7 2 30 30 H 0.97006 * 119.99855 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.87876 * 300.51120 * 10 9 7 32 32 H 1.08999 * 109.88333 * 61.51375 * 10 9 7 33 33 H 1.08992 * 110.72087 * 263.82284 * 11 10 9 34 34 H 1.09006 * 110.72091 * 140.55024 * 11 10 9 35 35 H 1.09002 * 109.47398 * 298.65192 * 14 12 11 36 36 H 1.09001 * 109.47194 * 58.65372 * 14 12 11 37 37 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 38 38 H 1.09002 * 109.47152 * 300.00160 * 18 16 15 39 39 H 1.09001 * 109.46980 * 60.00059 * 18 16 15 40 40 H 1.08001 * 119.99912 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.99818 * 180.29593 * 21 20 19 42 42 H 1.09004 * 112.84481 * 168.77923 * 23 22 21 43 43 H 1.08996 * 113.60974 * 334.56634 * 24 23 22 44 44 H 1.08999 * 113.61274 * 105.46512 * 24 23 22 45 45 H 1.09000 * 113.61060 * 270.88239 * 25 24 23 46 46 H 1.08996 * 113.69255 * 139.99294 * 25 24 23 47 47 H 1.08998 * 113.61670 * 254.52912 * 26 23 22 48 48 H 1.09000 * 113.61163 * 25.35692 * 26 23 22 49 49 H 1.07995 * 119.99684 * 179.97438 * 27 22 21 50 50 H 1.07998 * 119.99909 * 180.02562 * 28 27 22 51 51 H 1.09006 * 110.36588 * 36.99989 * 29 9 7 52 52 H 1.09000 * 110.46273 * 274.72892 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1376 -2.5328 0.0030 11 6 -0.4485 -4.0440 0.0319 12 6 0.8525 -4.6553 0.6162 13 1 0.8589 -4.5947 1.7045 14 6 1.0370 -6.1006 0.1493 15 7 2.2887 -6.6333 0.6931 16 6 2.6615 -7.8976 0.4118 17 8 1.9605 -8.5944 -0.2910 18 6 3.9489 -8.4458 0.9716 19 6 4.1313 -9.8689 0.5107 20 6 3.6333 -10.9108 1.2706 21 6 3.7960 -12.2159 0.8450 22 6 4.4664 -12.4798 -0.3347 23 6 4.6484 -13.9029 -0.7959 24 6 3.4346 -14.8030 -0.5105 25 6 4.4393 -15.9046 -0.1337 26 6 5.4312 -14.7772 0.1979 27 6 4.9695 -11.4382 -1.0917 28 6 4.8017 -10.1328 -0.6691 29 6 1.9334 -3.7311 0.0017 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5568 -2.0510 0.8864 32 1 -0.5555 -2.0831 -0.8977 33 1 -0.6327 -4.4192 -0.9747 34 1 -1.2979 -4.2507 0.6831 35 1 0.2014 -6.7057 0.5012 36 1 1.0729 -6.1289 -0.9397 37 1 2.8492 -6.0762 1.2555 38 1 4.7846 -7.8405 0.6205 39 1 3.9124 -8.4181 2.0607 40 1 3.1131 -10.7049 2.1943 41 1 3.4028 -13.0297 1.4363 42 1 5.0138 -13.9723 -1.8205 43 1 2.8258 -14.4623 0.3269 44 1 2.8448 -15.0347 -1.3974 45 1 4.7466 -16.5223 -0.9776 46 1 4.1399 -16.4922 0.7341 47 1 6.4532 -14.9882 -0.1170 48 1 5.3693 -14.4287 1.2288 49 1 5.4935 -11.6444 -2.0132 50 1 5.1943 -9.3190 -1.2607 51 1 2.8338 -3.7400 0.6160 52 1 2.1664 -4.0440 -1.0161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663608424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:00 Heat of formation + Delta-G solvation = 18.728118 kcal Electronic energy + Delta-G solvation = -28410.454585 eV Core-core repulsion = 24568.301880 eV Total energy + Delta-G solvation = -3842.152705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.45119 -39.61409 -38.11236 -37.50679 -34.60864 -33.05595 -32.43798 -31.07233 -29.97406 -28.88418 -27.88224 -25.97244 -25.63029 -24.75608 -23.37360 -23.01444 -21.48729 -20.55644 -19.93278 -19.65305 -19.43398 -17.23102 -17.00609 -16.62273 -16.19153 -16.02127 -15.48612 -15.18796 -14.95329 -14.65963 -14.39361 -14.21803 -13.86727 -13.57624 -13.51223 -13.26506 -13.17537 -12.81268 -12.75391 -12.37213 -12.22709 -12.04070 -11.92740 -11.75878 -11.68236 -11.37621 -11.26453 -10.91572 -10.85403 -10.78871 -10.76821 -10.50909 -10.41593 -10.17786 -10.02294 -9.88596 -9.72308 -9.65815 -9.02274 -8.93306 -8.62147 -8.60603 -6.84305 -5.72107 -3.05810 1.14859 1.30341 2.69373 3.21167 3.39372 3.43613 3.45078 3.67237 4.24777 4.28885 4.37222 4.48369 4.52903 4.61493 4.68314 4.84945 4.86162 4.91826 5.05242 5.14921 5.23934 5.26270 5.30499 5.32108 5.36023 5.38891 5.42317 5.48962 5.53711 5.54793 5.61728 5.68544 5.77527 5.86677 5.89716 5.94305 6.05256 6.06320 6.07023 6.27638 6.33808 6.45943 6.46895 6.49298 6.49347 6.53025 6.68534 6.86708 6.90586 7.54643 7.58047 7.62535 7.81839 8.25340 8.29032 9.21104 9.81634 10.47804 11.39510 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031413 B = 0.001579 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.131180 B =17731.026931 C =18211.090709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.133 3.867 15 N -0.726 5.726 16 C 0.511 3.489 17 O -0.537 6.537 18 C -0.105 4.105 19 C -0.066 4.066 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.074 4.074 23 C -0.074 4.074 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.116 4.116 28 C -0.102 4.102 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.035 0.965 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.557 -28.495 2.856 30.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.097 0.903 14 C 0.010 3.990 15 N -0.378 5.378 16 C 0.297 3.703 17 O -0.413 6.413 18 C -0.145 4.145 19 C -0.066 4.066 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.074 4.074 23 C -0.092 4.092 24 C -0.173 4.173 25 C -0.181 4.181 26 C -0.168 4.168 27 C -0.134 4.134 28 C -0.120 4.120 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.053 0.947 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.972 -28.741 2.337 30.200 hybrid contribution 0.648 1.357 0.215 1.519 sum 9.620 -27.384 2.552 29.137 Atomic orbital electron populations 1.69957 1.04886 1.25146 1.56930 1.24805 0.95723 0.97681 1.02221 0.86199 0.78454 0.83215 0.77873 1.21188 1.21572 1.21183 1.19007 0.90384 0.82472 1.44023 0.90542 1.44469 1.01732 0.99844 1.87195 1.21150 0.84316 0.88184 1.01130 1.22856 0.95461 0.99391 0.99679 1.22618 0.98598 0.92064 1.00470 0.90254 1.21375 0.85196 0.93702 0.98760 1.46096 1.24947 1.13725 1.53025 1.20485 0.87244 0.81646 0.80926 1.90721 1.54689 1.58241 1.37693 1.20700 0.96924 0.94251 1.02591 1.19261 0.98366 0.93556 0.95412 1.20936 0.99026 0.92356 0.99761 1.20879 0.99691 0.96366 0.96461 1.19678 0.98165 0.94505 0.95036 1.21531 0.97849 0.90231 0.99576 1.23042 0.96149 0.96036 1.02030 1.22841 0.97311 0.96432 1.01547 1.22983 0.98295 0.96037 0.99522 1.20964 1.00498 0.92279 0.99617 1.20970 0.98770 0.96728 0.95524 1.21555 0.93941 0.86161 0.96697 0.93698 0.93581 0.93882 0.92224 0.91992 0.91819 0.91485 0.76390 0.87881 0.87999 0.86309 0.86251 0.88657 0.89660 0.91321 0.90199 0.91407 0.91424 0.89882 0.86282 0.86201 0.94701 0.96374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.31 55.49 0.57 -26.46 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -15.30 3.39 -170.07 -0.58 -15.88 16 10 C 0.18 4.26 5.38 -3.07 -0.02 4.24 16 11 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 12 C -0.12 -1.93 3.11 -88.46 -0.27 -2.20 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.13 1.92 5.12 -4.04 -0.02 1.90 16 15 N -0.73 -8.93 5.41 -60.29 -0.33 -9.26 16 16 C 0.51 6.63 7.82 -10.98 -0.09 6.54 16 17 O -0.54 -9.20 16.03 5.56 0.09 -9.12 16 18 C -0.10 -0.97 5.83 -29.03 -0.17 -1.14 16 19 C -0.07 -0.71 4.37 -104.62 -0.46 -1.16 16 20 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 21 C -0.12 -1.11 8.61 -39.58 -0.34 -1.45 16 22 C -0.07 -0.70 5.29 -104.62 -0.55 -1.25 16 23 C -0.07 -0.55 3.98 -90.96 -0.36 -0.91 16 24 C -0.14 -0.92 7.46 -25.92 -0.19 -1.11 16 25 C -0.14 -0.81 8.08 -25.92 -0.21 -1.02 16 26 C -0.13 -0.82 7.55 -25.92 -0.20 -1.02 16 27 C -0.12 -1.15 9.71 -39.58 -0.38 -1.53 16 28 C -0.10 -1.08 9.70 -39.59 -0.38 -1.47 16 29 C 0.14 2.82 6.41 -2.52 -0.02 2.81 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 32 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 33 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.40 4.11 8.34 -40.82 -0.34 3.77 16 38 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.93 6.66 -52.49 -0.35 0.58 16 42 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 43 H 0.08 0.59 6.31 -51.93 -0.33 0.27 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 49 H 0.12 0.96 8.05 -52.49 -0.42 0.54 16 50 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 51 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 52 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 LS Contribution 414.08 15.07 6.24 6.24 Total: -1.00 -33.31 414.08 -12.38 -45.70 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.90 Total: 1.51 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -4.46 Total: -9.69 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.33 Total: -51.60 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.31 -12.38 -45.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663608424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.425 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds