Wall clock time and date at job start Wed Apr 1 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99963 * 2 1 4 4 H 1.48507 * 109.46896 * 239.99796 * 3 2 1 5 5 H 1.48501 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47212 * 120.00048 * 3 2 1 7 7 C 1.38809 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00414 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.65230 * 359.96350 * 9 7 2 11 11 C 1.54319 * 107.27361 * 181.09200 * 10 9 7 12 12 C 1.55161 * 102.94121 * 22.18955 * 11 10 9 13 13 H 1.09000 * 111.03636 * 82.58666 * 12 11 10 14 14 C 1.53000 * 111.00123 * 206.42147 * 12 11 10 15 15 N 1.46499 * 109.46840 * 178.64865 * 14 12 11 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47064 * 180.02562 * 18 16 15 20 20 C 1.38237 * 119.99773 * 269.72267 * 19 18 16 21 21 C 1.38233 * 119.99711 * 179.74039 * 20 19 18 22 22 C 1.38234 * 120.00098 * 0.53683 * 21 20 19 23 23 C 1.50702 * 119.99902 * 179.76294 * 22 21 20 24 24 C 1.53782 * 113.61678 * 37.47704 * 23 22 21 25 25 C 1.53780 * 87.08135 * 220.01794 * 24 23 22 26 26 C 1.53778 * 113.61599 * 299.97421 * 23 22 21 27 27 C 1.38239 * 119.99938 * 359.74247 * 22 21 20 28 28 C 1.38230 * 119.99880 * 359.97438 * 27 22 21 29 29 C 1.47426 * 125.64854 * 179.97438 * 9 7 2 30 30 H 0.97006 * 119.99855 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.87876 * 300.51120 * 10 9 7 32 32 H 1.08999 * 109.88333 * 61.51375 * 10 9 7 33 33 H 1.08992 * 110.72087 * 263.82284 * 11 10 9 34 34 H 1.09006 * 110.72091 * 140.55024 * 11 10 9 35 35 H 1.09002 * 109.47398 * 298.65192 * 14 12 11 36 36 H 1.09001 * 109.47194 * 58.65372 * 14 12 11 37 37 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 38 38 H 1.09002 * 109.47152 * 300.00160 * 18 16 15 39 39 H 1.09001 * 109.46980 * 60.00059 * 18 16 15 40 40 H 1.08001 * 119.99912 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.99818 * 180.29593 * 21 20 19 42 42 H 1.09004 * 112.84481 * 168.77923 * 23 22 21 43 43 H 1.08996 * 113.60974 * 334.56634 * 24 23 22 44 44 H 1.08999 * 113.61274 * 105.46512 * 24 23 22 45 45 H 1.09000 * 113.61060 * 270.88239 * 25 24 23 46 46 H 1.08996 * 113.69255 * 139.99294 * 25 24 23 47 47 H 1.08998 * 113.61670 * 254.52912 * 26 23 22 48 48 H 1.09000 * 113.61163 * 25.35692 * 26 23 22 49 49 H 1.07995 * 119.99684 * 179.97438 * 27 22 21 50 50 H 1.07998 * 119.99909 * 180.02562 * 28 27 22 51 51 H 1.09006 * 110.36588 * 36.99989 * 29 9 7 52 52 H 1.09000 * 110.46273 * 274.72892 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1376 -2.5328 0.0030 11 6 -0.4485 -4.0440 0.0319 12 6 0.8525 -4.6553 0.6162 13 1 0.8589 -4.5947 1.7045 14 6 1.0370 -6.1006 0.1493 15 7 2.2887 -6.6333 0.6931 16 6 2.6615 -7.8976 0.4118 17 8 1.9605 -8.5944 -0.2910 18 6 3.9489 -8.4458 0.9716 19 6 4.1313 -9.8689 0.5107 20 6 3.6333 -10.9108 1.2706 21 6 3.7960 -12.2159 0.8450 22 6 4.4664 -12.4798 -0.3347 23 6 4.6484 -13.9029 -0.7959 24 6 3.4346 -14.8030 -0.5105 25 6 4.4393 -15.9046 -0.1337 26 6 5.4312 -14.7772 0.1979 27 6 4.9695 -11.4382 -1.0917 28 6 4.8017 -10.1328 -0.6691 29 6 1.9334 -3.7311 0.0017 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5568 -2.0510 0.8864 32 1 -0.5555 -2.0831 -0.8977 33 1 -0.6327 -4.4192 -0.9747 34 1 -1.2979 -4.2507 0.6831 35 1 0.2014 -6.7057 0.5012 36 1 1.0729 -6.1289 -0.9397 37 1 2.8492 -6.0762 1.2555 38 1 4.7846 -7.8405 0.6205 39 1 3.9124 -8.4181 2.0607 40 1 3.1131 -10.7049 2.1943 41 1 3.4028 -13.0297 1.4363 42 1 5.0138 -13.9723 -1.8205 43 1 2.8258 -14.4623 0.3269 44 1 2.8448 -15.0347 -1.3974 45 1 4.7466 -16.5223 -0.9776 46 1 4.1399 -16.4922 0.7341 47 1 6.4532 -14.9882 -0.1170 48 1 5.3693 -14.4287 1.2288 49 1 5.4935 -11.6444 -2.0132 50 1 5.1943 -9.3190 -1.2607 51 1 2.8338 -3.7400 0.6160 52 1 2.1664 -4.0440 -1.0161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663608424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:58 Heat of formation + Delta-G solvation = 0.981277 kcal Electronic energy + Delta-G solvation = -28411.224146 eV Core-core repulsion = 24568.301880 eV Total energy + Delta-G solvation = -3842.922266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.21423 -40.52056 -39.31068 -38.55138 -35.98561 -34.31582 -33.71167 -31.79120 -31.65812 -30.19137 -29.03686 -27.23008 -26.46908 -25.76192 -24.72886 -23.72031 -22.37328 -21.91430 -21.42292 -20.92063 -20.00029 -18.87807 -17.99826 -17.68430 -17.21542 -16.88343 -16.65854 -16.31444 -16.11260 -15.78762 -15.55675 -15.45389 -14.88186 -14.65930 -14.60928 -14.24094 -14.00011 -13.93536 -13.82126 -13.45501 -13.36499 -13.32175 -13.04516 -12.83742 -12.73551 -12.67381 -12.59177 -12.37978 -12.06508 -11.90992 -11.89355 -11.83353 -11.52820 -11.45654 -11.40764 -11.28481 -11.04993 -10.87158 -10.69105 -10.03191 -9.75790 -9.34172 -8.89066 -7.84162 -5.19775 0.41609 0.56474 1.46344 1.49579 1.55875 1.71052 2.26284 2.50366 2.90254 3.34074 3.62310 3.68572 3.72648 3.80125 3.84379 3.88131 3.99497 4.03324 4.04260 4.11833 4.15697 4.18313 4.26766 4.42280 4.46306 4.59646 4.62569 4.67239 4.72438 4.75276 4.81997 4.82660 4.87800 4.93054 4.93386 5.06648 5.08664 5.10069 5.10792 5.17126 5.20141 5.31885 5.38975 5.46369 5.50514 5.51733 5.58587 5.67887 5.71823 5.78550 5.81719 6.16219 6.20834 6.62523 7.10981 7.31800 7.79132 8.43607 9.26152 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031413 B = 0.001579 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.131180 B =17731.026931 C =18211.090709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.095 4.095 13 H 0.091 0.909 14 C 0.146 3.854 15 N -0.719 5.719 16 C 0.512 3.488 17 O -0.582 6.582 18 C -0.097 4.097 19 C -0.083 4.083 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.079 4.079 23 C -0.079 4.079 24 C -0.139 4.139 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.130 4.130 28 C -0.119 4.119 29 C 0.139 3.861 30 H 0.246 0.754 31 H 0.013 0.987 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.414 0.586 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.131 0.869 50 H 0.125 0.875 51 H 0.052 0.948 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.137 -30.113 3.819 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.114 4.114 13 H 0.109 0.891 14 C 0.021 3.979 15 N -0.371 5.371 16 C 0.300 3.700 17 O -0.462 6.462 18 C -0.136 4.136 19 C -0.083 4.083 20 C -0.134 4.134 21 C -0.142 4.142 22 C -0.079 4.079 23 C -0.097 4.097 24 C -0.176 4.176 25 C -0.174 4.174 26 C -0.165 4.165 27 C -0.148 4.148 28 C -0.137 4.137 29 C 0.014 3.986 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.021 0.979 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.149 0.851 50 H 0.143 0.857 51 H 0.070 0.930 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.598 -30.379 3.319 32.345 hybrid contribution 0.173 1.814 -0.124 1.827 sum 10.771 -28.565 3.196 30.695 Atomic orbital electron populations 1.70192 1.06359 1.25276 1.58315 1.25673 0.96606 1.01124 1.02697 0.85149 0.77117 0.78776 0.78269 1.20471 1.22218 1.19984 1.19458 0.91098 0.83764 1.42960 0.89746 1.44799 1.02441 1.01270 1.87005 1.20916 0.83927 0.91761 0.97632 1.22723 0.97347 0.95058 1.01130 1.22419 0.95870 0.92398 1.00737 0.89079 1.21091 0.86560 0.92243 0.97986 1.45990 1.24360 1.13875 1.52859 1.21084 0.87845 0.81136 0.79948 1.90706 1.56336 1.59348 1.39796 1.20733 0.95300 0.93511 1.04060 1.19489 0.98731 0.94429 0.95679 1.21202 0.99144 0.92663 1.00355 1.21122 0.99630 0.96725 0.96742 1.19957 0.97627 0.95442 0.94919 1.21624 0.98627 0.89304 1.00120 1.23067 0.96159 0.96499 1.01916 1.22822 0.96352 0.96101 1.02086 1.22965 0.98664 0.95863 0.99052 1.21228 1.00844 0.92374 1.00314 1.21198 0.99259 0.97300 0.95902 1.21739 0.95435 0.84323 0.97123 0.94492 0.96893 0.97923 0.91341 0.89672 0.91163 0.92814 0.74897 0.85783 0.85259 0.85163 0.84901 0.88245 0.89970 0.91455 0.89390 0.90712 0.90836 0.90087 0.85079 0.85667 0.92998 0.96615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.63 10.31 21.65 0.22 -57.40 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 3 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.24 -13.55 10.28 84.03 0.86 -12.69 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -31.86 3.39 -691.97 -2.35 -34.21 16 10 C 0.18 9.01 5.38 86.73 0.47 9.48 16 11 C -0.12 -4.38 6.42 31.78 0.20 -4.18 16 12 C -0.09 -2.90 3.11 -9.40 -0.03 -2.93 16 13 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.15 3.87 5.12 86.38 0.44 4.31 16 15 N -0.72 -15.80 5.41 -463.05 -2.50 -18.31 16 16 C 0.51 12.25 7.82 87.66 0.69 12.93 16 17 O -0.58 -19.37 16.03 -3.02 -0.05 -19.42 16 18 C -0.10 -1.56 5.83 29.10 0.17 -1.39 16 19 C -0.08 -1.67 4.37 -19.87 -0.09 -1.76 16 20 C -0.12 -2.23 9.70 22.27 0.22 -2.02 16 21 C -0.12 -2.25 8.61 22.27 0.19 -2.06 16 22 C -0.08 -1.43 5.29 -19.86 -0.11 -1.54 16 23 C -0.08 -1.08 3.98 -11.01 -0.04 -1.12 16 24 C -0.14 -1.74 7.46 31.12 0.23 -1.50 16 25 C -0.14 -1.29 8.08 31.12 0.25 -1.04 16 26 C -0.13 -1.41 7.55 31.12 0.23 -1.17 16 27 C -0.13 -2.49 9.71 22.27 0.22 -2.27 16 28 C -0.12 -2.43 9.70 22.27 0.22 -2.22 16 29 C 0.14 5.29 6.41 86.86 0.56 5.84 16 30 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 31 H 0.01 0.71 7.38 -2.38 -0.02 0.69 16 32 H 0.00 0.14 7.50 -2.39 -0.02 0.12 16 33 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 34 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.41 7.11 8.34 -92.71 -0.77 6.33 16 38 H 0.12 1.48 8.09 -2.39 -0.02 1.46 16 39 H 0.13 1.37 8.08 -2.39 -0.02 1.35 16 40 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.13 1.92 6.66 -2.91 -0.02 1.90 16 42 H 0.10 1.25 8.09 -2.38 -0.02 1.23 16 43 H 0.08 1.06 6.31 -2.39 -0.02 1.05 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.08 0.93 7.72 -2.39 -0.02 0.91 16 49 H 0.13 2.04 8.05 -2.91 -0.02 2.02 16 50 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 51 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 52 H 0.02 0.63 8.00 -2.39 -0.02 0.61 16 Total: -1.00 -73.95 414.08 2.62 -71.33 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.12 Total: 19.19 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.15 Total: -8.74 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.63 Total: -109.92 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.95 2.62 -71.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663608424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.310 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds