Wall clock time and date at job start Wed Apr 1 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00216 * 2 1 4 4 H 1.48497 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47097 * 300.00272 * 3 2 1 6 6 H 1.48499 * 109.46750 * 60.00152 * 3 2 1 7 7 C 1.38817 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99663 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64657 * 0.02770 * 9 7 2 11 11 C 1.54333 * 107.26766 * 178.91994 * 10 9 7 12 12 C 1.55154 * 102.94175 * 337.80516 * 11 10 9 13 13 H 1.08997 * 111.00134 * 277.39205 * 12 11 10 14 14 C 1.53002 * 111.00404 * 153.57829 * 12 11 10 15 15 N 1.46490 * 109.46970 * 174.99790 * 14 12 11 16 16 C 1.34778 * 119.99712 * 180.02562 * 15 14 12 17 17 O 1.21271 * 120.00160 * 359.97438 * 16 15 14 18 18 C 1.50709 * 120.00043 * 180.02562 * 16 15 14 19 19 C 1.50695 * 109.47275 * 180.02562 * 18 16 15 20 20 C 1.38231 * 120.00170 * 89.99624 * 19 18 16 21 21 C 1.38234 * 119.99987 * 179.97438 * 20 19 18 22 22 C 1.38241 * 120.00165 * 0.02562 * 21 20 19 23 23 C 1.50690 * 120.00411 * 179.97438 * 22 21 20 24 24 C 1.53786 * 113.61518 * 119.99831 * 23 22 21 25 25 C 1.53781 * 87.17350 * 140.02616 * 24 23 22 26 26 C 1.53781 * 87.08070 * 334.52830 * 25 24 23 27 27 C 1.38242 * 119.99635 * 0.25170 * 22 21 20 28 28 C 1.38233 * 120.00067 * 359.46914 * 27 22 21 29 29 C 1.47424 * 125.64593 * 179.97438 * 9 7 2 30 30 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.88716 * 59.49900 * 10 9 7 32 32 H 1.09001 * 110.01349 * 298.40406 * 10 9 7 33 33 H 1.09002 * 110.71387 * 219.44111 * 11 10 9 34 34 H 1.08998 * 110.86812 * 96.24237 * 11 10 9 35 35 H 1.09004 * 109.46871 * 54.99650 * 14 12 11 36 36 H 1.08996 * 109.46882 * 295.00059 * 14 12 11 37 37 H 0.97006 * 120.00410 * 0.02562 * 15 14 12 38 38 H 1.09001 * 109.46825 * 59.99537 * 18 16 15 39 39 H 1.09003 * 109.46820 * 299.99883 * 18 16 15 40 40 H 1.07995 * 119.99842 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.00167 * 180.02562 * 21 20 19 42 42 H 1.09000 * 112.90879 * 348.75179 * 23 22 21 43 43 H 1.09002 * 113.61357 * 25.43533 * 24 23 22 44 44 H 1.09002 * 113.61608 * 254.61695 * 24 23 22 45 45 H 1.08999 * 113.61567 * 89.07405 * 25 24 23 46 46 H 1.08998 * 113.61196 * 219.97759 * 25 24 23 47 47 H 1.09005 * 113.61471 * 139.98321 * 26 25 24 48 48 H 1.08996 * 113.61178 * 270.79663 * 26 25 24 49 49 H 1.07998 * 120.00098 * 179.72595 * 27 22 21 50 50 H 1.07996 * 120.00406 * 180.29628 * 28 27 22 51 51 H 1.09004 * 110.36268 * 85.31462 * 29 9 7 52 52 H 1.08996 * 110.36787 * 322.99162 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0006 11 6 -0.4486 -4.0441 -0.0283 12 6 0.8517 -4.6557 -0.6135 13 1 0.8563 -4.5957 -1.7018 14 6 1.0367 -6.1008 -0.1460 15 7 2.2056 -6.6829 -0.8100 16 6 2.5634 -7.9561 -0.5506 17 8 1.9180 -8.6197 0.2329 18 6 3.7662 -8.5549 -1.2332 19 6 3.9476 -9.9786 -0.7738 20 6 3.3336 -11.0098 -1.4597 21 6 3.5005 -12.3158 -1.0386 22 6 4.2810 -12.5906 0.0688 23 6 4.4625 -14.0143 0.5282 24 6 5.9280 -14.4803 0.5258 25 6 5.6211 -15.2019 1.8487 26 6 4.5004 -14.1704 2.0603 27 6 4.8903 -11.5588 0.7581 28 6 4.7282 -10.2534 0.3336 29 6 1.9333 -3.7312 -0.0016 30 1 -0.4850 0.8401 0.0004 31 1 -0.5577 -2.0515 -0.8837 32 1 -0.5568 -2.0845 0.9003 33 1 -1.2987 -4.2509 -0.6785 34 1 -0.6335 -4.4210 0.9776 35 1 0.1490 -6.6808 -0.3985 36 1 1.1865 -6.1170 0.9335 37 1 2.7220 -6.1520 -1.4365 38 1 4.6538 -7.9750 -0.9800 39 1 3.6170 -8.5381 -2.3128 40 1 2.7236 -10.7950 -2.3246 41 1 3.0211 -13.1215 -1.5748 42 1 3.7826 -14.7091 0.0353 43 1 6.6453 -13.6660 0.6288 44 1 6.1699 -15.1563 -0.2943 45 1 5.2574 -16.2208 1.7161 46 1 6.4246 -15.1302 2.5817 47 1 3.5883 -14.5962 2.4786 48 1 4.8270 -13.2721 2.5841 49 1 5.4965 -11.7731 1.6259 50 1 5.2081 -9.4477 0.8693 51 1 2.1666 -4.0427 1.0166 52 1 2.8326 -3.7401 -0.6174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663608427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:03 Heat of formation + Delta-G solvation = 18.553194 kcal Electronic energy + Delta-G solvation = -28396.172793 eV Core-core repulsion = 24554.012502 eV Total energy + Delta-G solvation = -3842.160291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.44596 -39.60957 -38.10449 -37.50862 -34.61890 -33.06098 -32.44528 -31.07540 -29.97277 -28.88562 -27.89933 -25.96399 -25.62127 -24.74969 -23.37214 -23.01624 -21.48203 -20.56041 -19.98817 -19.64354 -19.43080 -17.21795 -17.00539 -16.63126 -16.27185 -15.90384 -15.57488 -15.20037 -14.83687 -14.68424 -14.49759 -14.13686 -13.86101 -13.57689 -13.52101 -13.26646 -13.16709 -12.80625 -12.77989 -12.35518 -12.21417 -12.04247 -11.94456 -11.81512 -11.65943 -11.38740 -11.26825 -10.90802 -10.85462 -10.82260 -10.76292 -10.50970 -10.39881 -10.14612 -10.00683 -9.89378 -9.72767 -9.66131 -9.02599 -8.93614 -8.62502 -8.61464 -6.84300 -5.72576 -3.06105 1.14369 1.30015 2.68799 3.20618 3.38463 3.43799 3.46424 3.66772 4.24842 4.29160 4.37570 4.48081 4.52213 4.61451 4.68269 4.84513 4.85635 4.91334 5.04587 5.14930 5.23128 5.24579 5.31070 5.32071 5.35769 5.39427 5.42413 5.48932 5.54384 5.54977 5.61967 5.68581 5.77543 5.86235 5.89761 5.94095 6.05114 6.06045 6.07070 6.27239 6.34492 6.45448 6.45840 6.49029 6.49416 6.53408 6.68841 6.86325 6.90738 7.55281 7.57307 7.62378 7.81982 8.24865 8.28444 9.20952 9.81423 10.47543 11.39220 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.001586 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.515539 B =17653.856704 C =18004.374781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.079 0.921 14 C 0.133 3.867 15 N -0.726 5.726 16 C 0.511 3.489 17 O -0.536 6.536 18 C -0.105 4.105 19 C -0.066 4.066 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.074 4.074 23 C -0.074 4.074 24 C -0.131 4.131 25 C -0.144 4.144 26 C -0.135 4.135 27 C -0.115 4.115 28 C -0.102 4.102 29 C 0.143 3.857 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.120 0.880 50 H 0.120 0.880 51 H 0.019 0.981 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.837 -28.425 -2.511 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.097 0.903 14 C 0.009 3.991 15 N -0.378 5.378 16 C 0.297 3.703 17 O -0.413 6.413 18 C -0.145 4.145 19 C -0.066 4.066 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.074 4.074 23 C -0.092 4.092 24 C -0.168 4.168 25 C -0.181 4.181 26 C -0.173 4.173 27 C -0.133 4.133 28 C -0.120 4.120 29 C 0.016 3.984 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.138 0.862 50 H 0.138 0.862 51 H 0.036 0.964 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.309 -28.655 -1.929 30.191 hybrid contribution 0.548 1.319 -0.321 1.464 sum 9.857 -27.336 -2.250 29.146 Atomic orbital electron populations 1.69977 1.04888 1.24907 1.57133 1.24812 0.95727 0.97691 1.02286 0.86047 0.78691 0.83791 0.77248 1.20526 1.21764 1.21747 1.19106 0.90447 0.82450 1.43709 0.90427 1.44486 1.01739 0.99885 1.87167 1.21140 0.84325 0.88168 1.01120 1.22859 0.95453 0.99397 0.99700 1.22609 0.98577 0.92063 1.00456 0.90256 1.21383 0.87272 0.93113 0.97302 1.46103 1.31543 1.13240 1.46929 1.20486 0.85791 0.81663 0.82377 1.90720 1.54446 1.60703 1.35433 1.20699 0.97976 0.93964 1.01816 1.19261 0.97708 0.93546 0.96111 1.20942 0.98751 0.92448 0.99920 1.20953 0.99138 0.96431 0.96904 1.19673 0.97499 0.94610 0.95573 1.21570 0.97781 0.93143 0.96692 1.22981 0.95869 1.00136 0.97837 1.22840 0.98955 0.98498 0.97855 1.23091 0.99183 0.99639 0.95363 1.20894 1.00417 0.92251 0.99775 1.20962 0.98609 0.96619 0.95791 1.21572 0.93955 0.86130 0.96709 0.93804 0.93567 0.93914 0.92023 0.92227 0.91794 0.91446 0.76422 0.87886 0.88011 0.86302 0.86321 0.88673 0.89874 0.91444 0.90201 0.91383 0.91332 0.89636 0.86209 0.86212 0.96364 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.06 10.31 55.49 0.57 -26.48 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.61 -15.32 3.39 -170.08 -0.58 -15.90 16 10 C 0.18 4.27 5.37 -3.06 -0.02 4.25 16 11 C -0.14 -2.46 6.42 -24.89 -0.16 -2.62 16 12 C -0.12 -1.92 3.05 -88.48 -0.27 -2.19 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.13 1.91 5.13 -4.05 -0.02 1.89 16 15 N -0.73 -8.85 5.50 -60.30 -0.33 -9.18 16 16 C 0.51 6.59 7.82 -10.98 -0.09 6.50 16 17 O -0.54 -9.18 16.03 5.57 0.09 -9.09 16 18 C -0.10 -0.96 5.83 -29.03 -0.17 -1.13 16 19 C -0.07 -0.70 4.37 -104.62 -0.46 -1.16 16 20 C -0.10 -1.06 9.70 -39.59 -0.38 -1.44 16 21 C -0.12 -1.12 9.71 -39.58 -0.38 -1.51 16 22 C -0.07 -0.69 5.29 -104.62 -0.55 -1.24 16 23 C -0.07 -0.54 3.99 -90.82 -0.36 -0.91 16 24 C -0.13 -0.82 7.54 -25.92 -0.20 -1.02 16 25 C -0.14 -0.82 8.08 -25.92 -0.21 -1.03 16 26 C -0.14 -0.93 7.46 -25.78 -0.19 -1.13 16 27 C -0.12 -1.12 8.63 -39.58 -0.34 -1.46 16 28 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 29 C 0.14 2.83 6.65 -2.54 -0.02 2.81 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 32 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 37 H 0.40 4.02 8.47 -40.82 -0.35 3.68 16 38 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.08 0.54 7.73 -51.93 -0.40 0.14 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.61 6.32 -51.93 -0.33 0.28 16 49 H 0.12 0.97 6.65 -52.49 -0.35 0.62 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 51 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 52 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 414.31 15.07 6.24 6.24 Total: -1.00 -33.41 414.31 -12.38 -45.78 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.90 Total: 1.33 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -4.45 Total: -9.69 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.34 Total: -51.56 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.41 -12.38 -45.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663608427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.338 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds