Wall clock time and date at job start Wed Apr 1 2020 03:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00216 * 2 1 4 4 H 1.48497 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47097 * 300.00272 * 3 2 1 6 6 H 1.48499 * 109.46750 * 60.00152 * 3 2 1 7 7 C 1.38817 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99663 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64657 * 0.02770 * 9 7 2 11 11 C 1.54333 * 107.26766 * 178.91994 * 10 9 7 12 12 C 1.55154 * 102.94175 * 337.80516 * 11 10 9 13 13 H 1.08997 * 111.00134 * 277.39205 * 12 11 10 14 14 C 1.53002 * 111.00404 * 153.57829 * 12 11 10 15 15 N 1.46490 * 109.46970 * 174.99790 * 14 12 11 16 16 C 1.34778 * 119.99712 * 180.02562 * 15 14 12 17 17 O 1.21271 * 120.00160 * 359.97438 * 16 15 14 18 18 C 1.50709 * 120.00043 * 180.02562 * 16 15 14 19 19 C 1.50695 * 109.47275 * 180.02562 * 18 16 15 20 20 C 1.38231 * 120.00170 * 89.99624 * 19 18 16 21 21 C 1.38234 * 119.99987 * 179.97438 * 20 19 18 22 22 C 1.38241 * 120.00165 * 0.02562 * 21 20 19 23 23 C 1.50690 * 120.00411 * 179.97438 * 22 21 20 24 24 C 1.53786 * 113.61518 * 119.99831 * 23 22 21 25 25 C 1.53781 * 87.17350 * 140.02616 * 24 23 22 26 26 C 1.53781 * 87.08070 * 334.52830 * 25 24 23 27 27 C 1.38242 * 119.99635 * 0.25170 * 22 21 20 28 28 C 1.38233 * 120.00067 * 359.46914 * 27 22 21 29 29 C 1.47424 * 125.64593 * 179.97438 * 9 7 2 30 30 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.88716 * 59.49900 * 10 9 7 32 32 H 1.09001 * 110.01349 * 298.40406 * 10 9 7 33 33 H 1.09002 * 110.71387 * 219.44111 * 11 10 9 34 34 H 1.08998 * 110.86812 * 96.24237 * 11 10 9 35 35 H 1.09004 * 109.46871 * 54.99650 * 14 12 11 36 36 H 1.08996 * 109.46882 * 295.00059 * 14 12 11 37 37 H 0.97006 * 120.00410 * 0.02562 * 15 14 12 38 38 H 1.09001 * 109.46825 * 59.99537 * 18 16 15 39 39 H 1.09003 * 109.46820 * 299.99883 * 18 16 15 40 40 H 1.07995 * 119.99842 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.00167 * 180.02562 * 21 20 19 42 42 H 1.09000 * 112.90879 * 348.75179 * 23 22 21 43 43 H 1.09002 * 113.61357 * 25.43533 * 24 23 22 44 44 H 1.09002 * 113.61608 * 254.61695 * 24 23 22 45 45 H 1.08999 * 113.61567 * 89.07405 * 25 24 23 46 46 H 1.08998 * 113.61196 * 219.97759 * 25 24 23 47 47 H 1.09005 * 113.61471 * 139.98321 * 26 25 24 48 48 H 1.08996 * 113.61178 * 270.79663 * 26 25 24 49 49 H 1.07998 * 120.00098 * 179.72595 * 27 22 21 50 50 H 1.07996 * 120.00406 * 180.29628 * 28 27 22 51 51 H 1.09004 * 110.36268 * 85.31462 * 29 9 7 52 52 H 1.08996 * 110.36787 * 322.99162 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0006 11 6 -0.4486 -4.0441 -0.0283 12 6 0.8517 -4.6557 -0.6135 13 1 0.8563 -4.5957 -1.7018 14 6 1.0367 -6.1008 -0.1460 15 7 2.2056 -6.6829 -0.8100 16 6 2.5634 -7.9561 -0.5506 17 8 1.9180 -8.6197 0.2329 18 6 3.7662 -8.5549 -1.2332 19 6 3.9476 -9.9786 -0.7738 20 6 3.3336 -11.0098 -1.4597 21 6 3.5005 -12.3158 -1.0386 22 6 4.2810 -12.5906 0.0688 23 6 4.4625 -14.0143 0.5282 24 6 5.9280 -14.4803 0.5258 25 6 5.6211 -15.2019 1.8487 26 6 4.5004 -14.1704 2.0603 27 6 4.8903 -11.5588 0.7581 28 6 4.7282 -10.2534 0.3336 29 6 1.9333 -3.7312 -0.0016 30 1 -0.4850 0.8401 0.0004 31 1 -0.5577 -2.0515 -0.8837 32 1 -0.5568 -2.0845 0.9003 33 1 -1.2987 -4.2509 -0.6785 34 1 -0.6335 -4.4210 0.9776 35 1 0.1490 -6.6808 -0.3985 36 1 1.1865 -6.1170 0.9335 37 1 2.7220 -6.1520 -1.4365 38 1 4.6538 -7.9750 -0.9800 39 1 3.6170 -8.5381 -2.3128 40 1 2.7236 -10.7950 -2.3246 41 1 3.0211 -13.1215 -1.5748 42 1 3.7826 -14.7091 0.0353 43 1 6.6453 -13.6660 0.6288 44 1 6.1699 -15.1563 -0.2943 45 1 5.2574 -16.2208 1.7161 46 1 6.4246 -15.1302 2.5817 47 1 3.5883 -14.5962 2.4786 48 1 4.8270 -13.2721 2.5841 49 1 5.4965 -11.7731 1.6259 50 1 5.2081 -9.4477 0.8693 51 1 2.1666 -4.0427 1.0166 52 1 2.8326 -3.7401 -0.6174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663608427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:02 Heat of formation + Delta-G solvation = 0.663880 kcal Electronic energy + Delta-G solvation = -28396.948532 eV Core-core repulsion = 24554.012502 eV Total energy + Delta-G solvation = -3842.936029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.20878 -40.50998 -39.31013 -38.54664 -35.98930 -34.32478 -33.71256 -31.79028 -31.65702 -30.19869 -29.04930 -27.22057 -26.46763 -25.76351 -24.71915 -23.71871 -22.35087 -21.92208 -21.49528 -20.89695 -20.00200 -18.87973 -17.98818 -17.68624 -17.28912 -16.73828 -16.66238 -16.47763 -16.01563 -15.75945 -15.53916 -15.50245 -14.87117 -14.67382 -14.57463 -14.24450 -14.00510 -13.93721 -13.82442 -13.53179 -13.32775 -13.30245 -13.06989 -12.84791 -12.74333 -12.67344 -12.64572 -12.37293 -11.97801 -11.91284 -11.87006 -11.84762 -11.53966 -11.46210 -11.41195 -11.28337 -11.05212 -10.86988 -10.71437 -10.03061 -9.75644 -9.34072 -8.89457 -7.84954 -5.20403 0.41567 0.56605 1.46178 1.47052 1.57346 1.71199 2.26452 2.49611 2.90267 3.33647 3.62488 3.68759 3.72401 3.78986 3.84002 3.87757 4.00173 4.02854 4.04445 4.11278 4.15810 4.18526 4.26442 4.42681 4.46359 4.59352 4.62294 4.67332 4.72909 4.75293 4.82069 4.83633 4.87473 4.92691 4.93319 5.06528 5.08257 5.09632 5.10342 5.16961 5.20398 5.31647 5.37710 5.46468 5.50813 5.52518 5.58473 5.67636 5.71862 5.78466 5.81829 6.16319 6.20392 6.62811 7.10694 7.32115 7.78557 8.42989 9.25806 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.001586 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.515539 B =17653.856704 C =18004.374781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.092 0.908 14 C 0.145 3.855 15 N -0.718 5.718 16 C 0.512 3.488 17 O -0.582 6.582 18 C -0.096 4.096 19 C -0.083 4.083 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.079 4.079 23 C -0.077 4.077 24 C -0.128 4.128 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.126 4.126 28 C -0.118 4.118 29 C 0.138 3.862 30 H 0.246 0.754 31 H 0.013 0.987 32 H 0.002 0.998 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.415 0.585 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.130 0.870 50 H 0.126 0.874 51 H 0.016 0.984 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -30.063 -3.472 32.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.113 4.113 13 H 0.110 0.890 14 C 0.021 3.979 15 N -0.371 5.371 16 C 0.300 3.700 17 O -0.462 6.462 18 C -0.136 4.136 19 C -0.083 4.083 20 C -0.134 4.134 21 C -0.146 4.146 22 C -0.079 4.079 23 C -0.096 4.096 24 C -0.166 4.166 25 C -0.174 4.174 26 C -0.178 4.178 27 C -0.143 4.143 28 C -0.137 4.137 29 C 0.013 3.987 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.021 0.979 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.148 0.852 50 H 0.144 0.856 51 H 0.034 0.966 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.911 -30.313 -2.912 32.349 hybrid contribution 0.075 1.783 0.014 1.785 sum 10.987 -28.530 -2.899 30.709 Atomic orbital electron populations 1.70203 1.06363 1.25133 1.58491 1.25673 0.96614 1.01111 1.02775 0.85007 0.78277 0.79430 0.76612 1.18781 1.21866 1.22215 1.19532 0.91098 0.83744 1.42632 0.89739 1.44815 1.02459 1.01291 1.86963 1.20906 0.83906 0.91770 0.97633 1.22724 0.97344 0.95050 1.01166 1.22407 0.95792 0.92369 1.00779 0.88987 1.21088 0.88508 0.91694 0.96614 1.45991 1.30953 1.13332 1.46792 1.21089 0.86133 0.81225 0.81584 1.90706 1.56158 1.61775 1.37560 1.20731 0.96836 0.93095 1.02915 1.19492 0.98024 0.94419 0.96409 1.21203 0.98935 0.92761 1.00461 1.21246 0.99287 0.96886 0.97214 1.19949 0.97031 0.95577 0.95389 1.21662 0.98747 0.92180 0.96971 1.22960 0.94956 1.00165 0.98471 1.22825 0.98503 0.98552 0.97517 1.23115 0.99720 0.99929 0.94993 1.21109 1.00697 0.92287 1.00245 1.21197 0.99092 0.97212 0.96151 1.21757 0.95443 0.84335 0.97115 0.94492 0.96861 0.97950 0.89685 0.91333 0.91217 0.92800 0.74856 0.85725 0.85280 0.85194 0.84802 0.88007 0.90261 0.90716 0.89265 0.90848 0.91403 0.90180 0.85186 0.85637 0.96629 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 10.31 21.65 0.22 -57.47 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.66 29.55 68.60 2.03 47.68 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.24 -13.41 10.28 84.03 0.86 -12.55 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -31.90 3.39 -692.02 -2.35 -34.25 16 10 C 0.18 9.02 5.37 86.73 0.47 9.49 16 11 C -0.12 -4.38 6.42 31.79 0.20 -4.18 16 12 C -0.09 -2.87 3.05 -9.41 -0.03 -2.90 16 13 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.15 3.85 5.13 86.38 0.44 4.30 16 15 N -0.72 -15.61 5.50 -463.07 -2.55 -18.15 16 16 C 0.51 12.15 7.82 87.66 0.69 12.83 16 17 O -0.58 -19.33 16.03 -3.00 -0.05 -19.38 16 18 C -0.10 -1.53 5.83 29.10 0.17 -1.36 16 19 C -0.08 -1.66 4.37 -19.87 -0.09 -1.75 16 20 C -0.12 -2.24 9.70 22.27 0.22 -2.02 16 21 C -0.13 -2.35 9.71 22.27 0.22 -2.14 16 22 C -0.08 -1.43 5.29 -19.87 -0.11 -1.53 16 23 C -0.08 -1.05 3.99 -10.92 -0.04 -1.10 16 24 C -0.13 -1.43 7.54 31.12 0.23 -1.19 16 25 C -0.14 -1.34 8.08 31.12 0.25 -1.09 16 26 C -0.14 -1.80 7.46 31.21 0.23 -1.57 16 27 C -0.13 -2.36 8.63 22.27 0.19 -2.17 16 28 C -0.12 -2.40 9.70 22.27 0.22 -2.18 16 29 C 0.14 5.30 6.65 86.85 0.58 5.87 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 32 H 0.00 0.13 7.51 -2.39 -0.02 0.11 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 35 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.05 1.61 7.96 -2.39 -0.02 1.59 16 37 H 0.41 6.91 8.47 -92.70 -0.79 6.12 16 38 H 0.12 1.44 8.09 -2.39 -0.02 1.42 16 39 H 0.13 1.34 8.08 -2.39 -0.02 1.32 16 40 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16 43 H 0.08 0.94 7.73 -2.39 -0.02 0.93 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.08 1.10 6.32 -2.39 -0.02 1.08 16 49 H 0.13 2.04 6.65 -2.91 -0.02 2.02 16 50 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 51 H 0.02 0.62 7.91 -2.39 -0.02 0.61 16 52 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.21 414.31 2.59 -71.62 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.11 Total: 18.65 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.17 Total: -8.70 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -4.67 Total: -109.87 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -74.21 2.59 -71.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663608427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.280 kcal (2) G-P(sol) polarization free energy of solvation -74.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds