Wall clock time and date at job start Wed Apr 1 2020 02:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 110.27149 * 2 1 4 4 O 1.21282 * 120.00224 * 240.62430 * 3 2 1 5 5 N 1.34777 * 120.00071 * 60.61688 * 3 2 1 6 6 C 1.46500 * 120.00167 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47035 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.52517 * 54.92190 * 7 6 5 9 9 C 1.53037 * 109.49710 * 175.00272 * 7 6 5 10 10 C 1.53044 * 109.54018 * 181.31824 * 9 7 6 11 11 C 1.53192 * 109.31028 * 298.63555 * 10 9 7 12 12 N 1.46922 * 108.77681 * 54.63375 * 11 10 9 13 13 C 1.36936 * 120.63147 * 126.38745 * 12 11 10 14 14 H 1.07997 * 120.00481 * 207.68037 * 13 12 11 15 15 C 1.38817 * 119.99703 * 27.68907 * 13 12 11 16 16 N 1.31619 * 120.00022 * 17.34735 * 15 13 12 17 17 Si 1.86794 * 119.99665 * 197.35806 * 15 13 12 18 18 H 1.48501 * 109.47584 * 59.99354 * 17 15 13 19 19 H 1.48497 * 109.47225 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47222 * 299.99253 * 17 15 13 21 21 C 1.46931 * 118.74125 * 306.39044 * 12 11 10 22 22 C 1.54344 * 110.38771 * 237.87254 * 2 1 3 23 23 C 1.54347 * 102.39222 * 267.37784 * 22 2 1 24 24 C 1.51372 * 105.16864 * 333.64798 * 23 22 2 25 25 C 1.38495 * 130.39122 * 197.17450 * 24 23 22 26 26 C 1.38108 * 120.21642 * 180.02562 * 25 24 23 27 27 C 1.38248 * 119.93024 * 0.02562 * 26 25 24 28 28 C 1.38103 * 119.94181 * 359.97308 * 27 26 25 29 29 C 1.38220 * 109.76006 * 17.19578 * 24 23 22 30 30 H 1.09000 * 109.47321 * 60.69936 * 1 2 3 31 31 H 1.08998 * 109.47228 * 180.70146 * 1 2 3 32 32 H 1.09000 * 109.47174 * 300.70269 * 1 2 3 33 33 H 0.97003 * 119.99337 * 0.02562 * 5 3 2 34 34 H 1.09005 * 109.46793 * 60.00557 * 6 5 3 35 35 H 1.08995 * 109.46868 * 300.00711 * 6 5 3 36 36 H 1.08998 * 109.46350 * 61.29313 * 9 7 6 37 37 H 1.09004 * 109.45874 * 301.34027 * 9 7 6 38 38 H 1.08998 * 109.49260 * 58.58911 * 10 9 7 39 39 H 1.08999 * 109.49722 * 178.68379 * 10 9 7 40 40 H 1.09003 * 109.58553 * 174.42229 * 11 10 9 41 41 H 1.09005 * 109.58713 * 294.84248 * 11 10 9 42 42 H 0.97003 * 119.99445 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.58289 * 293.82593 * 21 12 11 44 44 H 1.08998 * 109.58649 * 173.39428 * 21 12 11 45 45 H 1.08998 * 110.82088 * 25.59771 * 22 2 1 46 46 H 1.08994 * 110.82709 * 149.14842 * 22 2 1 47 47 H 1.08998 * 110.30520 * 214.72893 * 23 22 2 48 48 H 1.09000 * 110.30900 * 92.56903 * 23 22 2 49 49 H 1.08003 * 119.89192 * 0.03017 * 25 24 23 50 50 H 1.08002 * 120.02878 * 179.97438 * 26 25 24 51 51 H 1.08004 * 120.02935 * 180.02562 * 27 26 25 52 52 H 1.07999 * 119.89341 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4137 0.0000 4 8 2.7455 1.8041 -0.9153 5 7 1.7484 2.2443 1.0170 6 6 2.2555 3.6187 1.0168 7 6 1.7689 4.3420 2.2741 8 1 2.0574 3.7719 3.1571 9 6 2.3984 5.7355 2.3376 10 6 1.9381 6.4475 3.6117 11 6 0.4147 6.6061 3.5813 12 7 -0.1942 5.2851 3.3747 13 6 -1.1516 4.8161 4.2341 14 1 -1.2761 3.7527 4.3756 15 6 -1.9624 5.7076 4.9232 16 7 -2.0602 6.9562 4.5187 17 14 -2.9144 5.1350 6.4250 18 1 -1.9647 4.6433 7.4553 19 1 -3.6984 6.2693 6.9761 20 1 -3.8365 4.0374 6.0377 21 6 0.2435 4.4768 2.2285 22 6 2.0676 -0.7694 -1.2252 23 6 2.2477 -2.1971 -0.6669 24 6 2.4677 -2.0162 0.8197 25 6 2.9874 -2.8874 1.7626 26 6 3.0945 -2.4988 3.0836 27 6 2.6814 -1.2364 3.4669 28 6 2.1629 -0.3662 2.5282 29 6 2.0553 -0.7538 1.2030 30 1 -0.3634 0.5029 -0.8962 31 1 -0.3633 -1.0276 0.0126 32 1 -0.3633 0.5247 0.8836 33 1 1.1940 1.9319 1.7492 34 1 1.8898 4.1407 0.1324 35 1 3.3453 3.6038 1.0053 36 1 2.0895 6.3136 1.4668 37 1 3.4845 5.6433 2.3453 38 1 2.2252 5.8575 4.4821 39 1 2.4052 7.4307 3.6680 40 1 0.0717 7.0226 4.5284 41 1 0.1328 7.2704 2.7642 42 1 -2.6264 7.5792 5.0005 43 1 -0.0523 4.9674 1.3011 44 1 -0.2124 3.4883 2.2831 45 1 1.3414 -0.7600 -2.0379 46 1 3.0224 -0.3581 -1.5526 47 1 3.1152 -2.6746 -1.1223 48 1 1.3507 -2.7896 -0.8471 49 1 3.3100 -3.8739 1.4639 50 1 3.4998 -3.1808 3.8164 51 1 2.7648 -0.9308 4.4994 52 1 1.8408 0.6199 2.8285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592946708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:32 Heat of formation + Delta-G solvation = -6.317498 kcal Electronic energy + Delta-G solvation = -30741.786948 eV Core-core repulsion = 26898.548183 eV Total energy + Delta-G solvation = -3843.238765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.16389 -39.09287 -37.82199 -36.06178 -34.85098 -33.16847 -32.20004 -30.47295 -30.29891 -29.92274 -28.84471 -25.94924 -25.35018 -25.05170 -22.90011 -22.30013 -21.83157 -21.23529 -20.73811 -19.72340 -18.92735 -17.32415 -16.64020 -16.25218 -16.01348 -15.48492 -15.18195 -14.99819 -14.88103 -14.57254 -14.20746 -13.89075 -13.66799 -13.45886 -13.41558 -13.20622 -12.89331 -12.73628 -12.64662 -12.41793 -12.32460 -12.19273 -12.12461 -11.82340 -11.56486 -11.33724 -11.27793 -11.03782 -10.98403 -10.87880 -10.70958 -10.52492 -10.26755 -10.19848 -9.97276 -9.81629 -9.54194 -9.44675 -8.99621 -8.89364 -8.71054 -8.48626 -6.70506 -5.81720 -3.24373 1.13783 1.21109 2.69029 3.24651 3.35379 3.41850 3.42325 3.59826 4.11481 4.23188 4.45537 4.62458 4.71076 4.82153 4.87964 4.96347 5.02466 5.10817 5.26187 5.28976 5.33911 5.38135 5.41264 5.42950 5.46342 5.59843 5.60552 5.64812 5.77630 5.79678 5.82018 5.87997 5.95024 5.98942 6.01413 6.07543 6.21917 6.26229 6.31594 6.35097 6.36044 6.43806 6.51919 6.56936 6.68673 6.75445 6.80248 6.84114 6.93935 7.37812 7.58585 7.64960 7.75424 8.27921 8.41498 9.17923 9.81527 10.38371 11.26520 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003088 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.692911 B = 9065.893943 C =10053.666695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.040 4.040 3 C 0.526 3.474 4 O -0.543 6.543 5 N -0.720 5.720 6 C 0.126 3.874 7 C -0.118 4.118 8 H 0.072 0.928 9 C -0.099 4.099 10 C -0.141 4.141 11 C 0.169 3.831 12 N -0.591 5.591 13 C -0.255 4.255 14 H 0.064 0.936 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.155 3.845 22 C -0.101 4.101 23 C -0.082 4.082 24 C -0.089 4.089 25 C -0.110 4.110 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.099 4.099 29 C -0.088 4.088 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.017 0.983 42 H 0.254 0.746 43 H 0.019 0.981 44 H 0.048 0.952 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.127 0.873 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.742 -17.179 -6.980 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 C 0.312 3.688 4 O -0.420 6.420 5 N -0.372 5.372 6 C 0.002 3.998 7 C -0.138 4.138 8 H 0.090 0.910 9 C -0.137 4.137 10 C -0.181 4.181 11 C 0.043 3.957 12 N -0.313 5.313 13 C -0.385 4.385 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.731 3.269 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.028 3.972 22 C -0.138 4.138 23 C -0.119 4.119 24 C -0.089 4.089 25 C -0.128 4.128 26 C -0.135 4.135 27 C -0.135 4.135 28 C -0.117 4.117 29 C -0.088 4.088 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.138 0.862 50 H 0.142 0.858 51 H 0.145 0.855 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.100 -16.723 -7.557 20.947 hybrid contribution -0.799 -0.287 1.326 1.574 sum 9.301 -17.010 -6.232 20.364 Atomic orbital electron populations 1.21809 0.91006 1.03179 1.03224 1.20377 0.97422 0.92024 0.94520 1.20291 0.79992 0.86723 0.81820 1.90663 1.38425 1.77070 1.35864 1.46205 1.53441 1.13140 1.24442 1.21483 0.98356 0.80725 0.99229 1.21956 0.99627 0.96369 0.95880 0.90966 1.21338 0.98215 0.95076 0.99117 1.22171 1.00750 0.98589 0.96564 1.20803 0.86760 0.86579 1.01534 1.44026 1.43689 1.16816 1.26784 1.19112 1.09916 0.91742 1.17732 0.91810 1.25025 0.97538 0.96403 1.00526 1.70032 1.40766 1.04283 1.39444 0.86391 0.79596 0.77592 0.83313 1.21028 1.21615 1.20882 1.20890 0.90101 0.95272 0.90964 1.22319 1.03050 0.93075 0.95392 1.21093 1.02299 0.97766 0.90741 1.20547 0.98264 0.94190 0.95864 1.20605 1.00355 0.99243 0.92618 1.21071 1.00091 0.96520 0.95770 1.21072 0.99014 0.93889 0.99524 1.20743 0.99371 0.99906 0.91704 1.20202 0.99928 0.95338 0.93353 0.91286 0.91178 0.91528 0.76288 0.91530 0.92001 0.92468 0.93457 0.92773 0.93183 0.89524 0.96460 0.93552 0.96334 0.93300 0.89923 0.89158 0.90421 0.90001 0.86225 0.85844 0.85549 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.39 37.16 0.31 -1.05 16 2 C -0.04 -0.46 0.72 -155.78 -0.11 -0.57 16 3 C 0.53 7.55 6.48 -10.98 -0.07 7.48 16 4 O -0.54 -9.47 15.51 5.56 0.09 -9.38 16 5 N -0.72 -9.89 4.72 -60.29 -0.28 -10.18 16 6 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 7 C -0.12 -1.92 2.37 -90.50 -0.21 -2.13 16 8 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 9 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 10 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 11 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 12 N -0.59 -14.31 2.99 -172.31 -0.52 -14.83 16 13 C -0.26 -6.80 9.59 -15.06 -0.14 -6.94 16 14 H 0.06 1.65 7.89 -52.49 -0.41 1.23 16 15 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 16 N -0.90 -25.79 11.19 55.49 0.62 -25.17 16 17 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.15 3.07 5.60 -3.71 -0.02 3.05 16 22 C -0.10 -1.03 5.85 -25.32 -0.15 -1.18 16 23 C -0.08 -0.70 6.76 -26.85 -0.18 -0.88 16 24 C -0.09 -0.92 6.14 -104.20 -0.64 -1.56 16 25 C -0.11 -1.04 10.04 -39.53 -0.40 -1.43 16 26 C -0.12 -1.09 10.05 -39.63 -0.40 -1.48 16 27 C -0.12 -1.21 10.05 -39.63 -0.40 -1.61 16 28 C -0.10 -1.14 9.47 -39.54 -0.37 -1.51 16 29 C -0.09 -1.01 4.90 -104.20 -0.51 -1.52 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 7.66 -51.93 -0.40 0.30 16 33 H 0.40 5.12 5.17 -40.82 -0.21 4.91 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 45 H 0.08 0.73 7.90 -51.93 -0.41 0.32 16 46 H 0.09 1.08 7.06 -51.93 -0.37 0.72 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 50 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 51 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 52 H 0.12 1.37 5.92 -52.49 -0.31 1.06 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -31.06 401.36 -11.49 -42.55 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.69 Total: 4.87 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -3.72 Total: -10.14 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.18 Total: -50.17 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.06 -11.49 -42.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592946708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.232 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds