Wall clock time and date at job start Wed Apr 1 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 110.27149 * 2 1 4 4 O 1.21282 * 120.00224 * 240.62430 * 3 2 1 5 5 N 1.34777 * 120.00071 * 60.61688 * 3 2 1 6 6 C 1.46500 * 120.00167 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47035 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.52517 * 54.92190 * 7 6 5 9 9 C 1.53037 * 109.49710 * 175.00272 * 7 6 5 10 10 C 1.53044 * 109.54018 * 181.31824 * 9 7 6 11 11 C 1.53192 * 109.31028 * 298.63555 * 10 9 7 12 12 N 1.46922 * 108.77681 * 54.63375 * 11 10 9 13 13 C 1.36936 * 120.63147 * 126.38745 * 12 11 10 14 14 H 1.07997 * 120.00481 * 207.68037 * 13 12 11 15 15 C 1.38817 * 119.99703 * 27.68907 * 13 12 11 16 16 N 1.31619 * 120.00022 * 17.34735 * 15 13 12 17 17 Si 1.86794 * 119.99665 * 197.35806 * 15 13 12 18 18 H 1.48501 * 109.47584 * 59.99354 * 17 15 13 19 19 H 1.48497 * 109.47225 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47222 * 299.99253 * 17 15 13 21 21 C 1.46931 * 118.74125 * 306.39044 * 12 11 10 22 22 C 1.54344 * 110.38771 * 237.87254 * 2 1 3 23 23 C 1.54347 * 102.39222 * 267.37784 * 22 2 1 24 24 C 1.51372 * 105.16864 * 333.64798 * 23 22 2 25 25 C 1.38495 * 130.39122 * 197.17450 * 24 23 22 26 26 C 1.38108 * 120.21642 * 180.02562 * 25 24 23 27 27 C 1.38248 * 119.93024 * 0.02562 * 26 25 24 28 28 C 1.38103 * 119.94181 * 359.97308 * 27 26 25 29 29 C 1.38220 * 109.76006 * 17.19578 * 24 23 22 30 30 H 1.09000 * 109.47321 * 60.69936 * 1 2 3 31 31 H 1.08998 * 109.47228 * 180.70146 * 1 2 3 32 32 H 1.09000 * 109.47174 * 300.70269 * 1 2 3 33 33 H 0.97003 * 119.99337 * 0.02562 * 5 3 2 34 34 H 1.09005 * 109.46793 * 60.00557 * 6 5 3 35 35 H 1.08995 * 109.46868 * 300.00711 * 6 5 3 36 36 H 1.08998 * 109.46350 * 61.29313 * 9 7 6 37 37 H 1.09004 * 109.45874 * 301.34027 * 9 7 6 38 38 H 1.08998 * 109.49260 * 58.58911 * 10 9 7 39 39 H 1.08999 * 109.49722 * 178.68379 * 10 9 7 40 40 H 1.09003 * 109.58553 * 174.42229 * 11 10 9 41 41 H 1.09005 * 109.58713 * 294.84248 * 11 10 9 42 42 H 0.97003 * 119.99445 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.58289 * 293.82593 * 21 12 11 44 44 H 1.08998 * 109.58649 * 173.39428 * 21 12 11 45 45 H 1.08998 * 110.82088 * 25.59771 * 22 2 1 46 46 H 1.08994 * 110.82709 * 149.14842 * 22 2 1 47 47 H 1.08998 * 110.30520 * 214.72893 * 23 22 2 48 48 H 1.09000 * 110.30900 * 92.56903 * 23 22 2 49 49 H 1.08003 * 119.89192 * 0.03017 * 25 24 23 50 50 H 1.08002 * 120.02878 * 179.97438 * 26 25 24 51 51 H 1.08004 * 120.02935 * 180.02562 * 27 26 25 52 52 H 1.07999 * 119.89341 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4137 0.0000 4 8 2.7455 1.8041 -0.9153 5 7 1.7484 2.2443 1.0170 6 6 2.2555 3.6187 1.0168 7 6 1.7689 4.3420 2.2741 8 1 2.0574 3.7719 3.1571 9 6 2.3984 5.7355 2.3376 10 6 1.9381 6.4475 3.6117 11 6 0.4147 6.6061 3.5813 12 7 -0.1942 5.2851 3.3747 13 6 -1.1516 4.8161 4.2341 14 1 -1.2761 3.7527 4.3756 15 6 -1.9624 5.7076 4.9232 16 7 -2.0602 6.9562 4.5187 17 14 -2.9144 5.1350 6.4250 18 1 -1.9647 4.6433 7.4553 19 1 -3.6984 6.2693 6.9761 20 1 -3.8365 4.0374 6.0377 21 6 0.2435 4.4768 2.2285 22 6 2.0676 -0.7694 -1.2252 23 6 2.2477 -2.1971 -0.6669 24 6 2.4677 -2.0162 0.8197 25 6 2.9874 -2.8874 1.7626 26 6 3.0945 -2.4988 3.0836 27 6 2.6814 -1.2364 3.4669 28 6 2.1629 -0.3662 2.5282 29 6 2.0553 -0.7538 1.2030 30 1 -0.3634 0.5029 -0.8962 31 1 -0.3633 -1.0276 0.0126 32 1 -0.3633 0.5247 0.8836 33 1 1.1940 1.9319 1.7492 34 1 1.8898 4.1407 0.1324 35 1 3.3453 3.6038 1.0053 36 1 2.0895 6.3136 1.4668 37 1 3.4845 5.6433 2.3453 38 1 2.2252 5.8575 4.4821 39 1 2.4052 7.4307 3.6680 40 1 0.0717 7.0226 4.5284 41 1 0.1328 7.2704 2.7642 42 1 -2.6264 7.5792 5.0005 43 1 -0.0523 4.9674 1.3011 44 1 -0.2124 3.4883 2.2831 45 1 1.3414 -0.7600 -2.0379 46 1 3.0224 -0.3581 -1.5526 47 1 3.1152 -2.6746 -1.1223 48 1 1.3507 -2.7896 -0.8471 49 1 3.3100 -3.8739 1.4639 50 1 3.4998 -3.1808 3.8164 51 1 2.7648 -0.9308 4.4994 52 1 1.8408 0.6199 2.8285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592946708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:30 Heat of formation + Delta-G solvation = -21.733100 kcal Electronic energy + Delta-G solvation = -30742.455419 eV Core-core repulsion = 26898.548183 eV Total energy + Delta-G solvation = -3843.907235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.06725 -40.17613 -39.30107 -36.93525 -36.25730 -34.77313 -33.17604 -32.30905 -31.69576 -30.73574 -29.61971 -27.31665 -27.04436 -26.10575 -23.89763 -23.63174 -23.16985 -22.31869 -21.74738 -21.02614 -20.23383 -18.70672 -18.15660 -17.16664 -17.03788 -16.84793 -16.47154 -16.13759 -15.92834 -15.74433 -15.53325 -15.28428 -15.01526 -14.66244 -14.54003 -14.35930 -14.03227 -13.95477 -13.80653 -13.75888 -13.38584 -13.34716 -13.15808 -13.03427 -12.86472 -12.56696 -12.50181 -12.39694 -12.30233 -12.04774 -11.98759 -11.84326 -11.74859 -11.65272 -11.60135 -11.34464 -11.12795 -10.79947 -10.52574 -10.10879 -9.74447 -9.47247 -8.68772 -7.87040 -5.32522 0.37451 0.45802 1.47070 1.49491 1.55936 1.57707 2.16683 2.51047 2.83176 3.27694 3.31935 3.42027 3.56463 3.74464 3.91530 3.95514 3.98416 4.03600 4.10609 4.14346 4.19157 4.32615 4.39051 4.53500 4.56091 4.58676 4.62521 4.65532 4.69239 4.73656 4.84119 4.85377 4.88322 4.92131 4.99612 5.03655 5.06678 5.08513 5.15111 5.20374 5.24925 5.28563 5.31279 5.37002 5.46148 5.52749 5.55989 5.61074 5.65942 5.67738 5.77406 6.07984 6.38174 6.46567 7.14644 7.15165 7.85813 8.38019 9.19149 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003088 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.692911 B = 9065.893943 C =10053.666695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.037 4.037 3 C 0.523 3.477 4 O -0.577 6.577 5 N -0.716 5.716 6 C 0.136 3.864 7 C -0.100 4.100 8 H 0.074 0.926 9 C -0.097 4.097 10 C -0.130 4.130 11 C 0.173 3.827 12 N -0.608 5.608 13 C -0.263 4.263 14 H 0.070 0.930 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.965 3.035 18 H -0.277 1.277 19 H -0.296 1.296 20 H -0.274 1.274 21 C 0.154 3.846 22 C -0.101 4.101 23 C -0.075 4.075 24 C -0.097 4.097 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.129 4.129 28 C -0.117 4.117 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.406 0.594 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.053 0.947 41 H -0.007 1.007 42 H 0.249 0.751 43 H 0.006 0.994 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.145 0.855 50 H 0.148 0.852 51 H 0.137 0.863 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.828 -19.882 -6.826 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.040 4.040 3 C 0.310 3.690 4 O -0.457 6.457 5 N -0.368 5.368 6 C 0.012 3.988 7 C -0.120 4.120 8 H 0.093 0.907 9 C -0.135 4.135 10 C -0.169 4.169 11 C 0.047 3.953 12 N -0.331 5.331 13 C -0.393 4.393 14 H 0.087 0.913 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.793 3.207 18 H -0.203 1.203 19 H -0.223 1.223 20 H -0.200 1.200 21 C 0.029 3.971 22 C -0.139 4.139 23 C -0.112 4.112 24 C -0.097 4.097 25 C -0.131 4.131 26 C -0.135 4.135 27 C -0.147 4.147 28 C -0.135 4.135 29 C -0.107 4.107 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.243 0.757 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.011 0.989 42 H 0.058 0.942 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.119 0.881 49 H 0.162 0.838 50 H 0.166 0.834 51 H 0.155 0.845 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.196 -19.455 -7.403 23.636 hybrid contribution -1.125 0.544 1.250 1.767 sum 10.072 -18.911 -6.153 22.292 Atomic orbital electron populations 1.21816 0.90095 1.04198 1.02888 1.20407 0.98072 0.90040 0.95459 1.20863 0.79258 0.87799 0.81039 1.90641 1.40044 1.77966 1.37090 1.46192 1.53274 1.12736 1.24627 1.21294 0.98639 0.81071 0.97827 1.21713 0.96644 0.96898 0.96762 0.90722 1.21334 1.00059 0.94423 0.97661 1.21998 0.96906 1.00137 0.97822 1.20640 0.90015 0.85934 0.98704 1.44286 1.43670 1.17288 1.27871 1.19495 1.09878 0.92117 1.17848 0.91263 1.25779 0.98982 0.96560 1.03204 1.70195 1.41930 1.05392 1.40640 0.85378 0.78338 0.76939 0.80036 1.20316 1.22270 1.20016 1.20991 0.92651 0.94583 0.88907 1.22327 1.02243 0.93999 0.95342 1.21105 1.03815 0.96745 0.89511 1.20845 0.98017 0.93907 0.96978 1.20943 0.99585 1.00154 0.92452 1.21411 0.99234 0.96382 0.96462 1.21304 0.99092 0.94385 0.99929 1.20835 1.00383 1.00085 0.92239 1.20273 1.01035 0.96113 0.93237 0.91243 0.89464 0.92237 0.75685 0.92358 0.91243 0.92604 0.90286 0.92859 0.91209 0.92902 0.98933 0.94173 0.97598 0.92802 0.88632 0.91253 0.89044 0.88072 0.83769 0.83425 0.84518 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.39 71.98 0.60 -1.94 16 2 C -0.04 -0.81 0.72 -53.00 -0.04 -0.85 16 3 C 0.52 14.87 6.48 87.66 0.57 15.44 16 4 O -0.58 -20.19 15.51 -3.03 -0.05 -20.24 16 5 N -0.72 -19.38 4.72 -463.06 -2.18 -21.57 16 6 C 0.14 3.89 5.07 86.38 0.44 4.32 16 7 C -0.10 -3.15 2.37 -10.72 -0.03 -3.18 16 8 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 9 C -0.10 -3.00 5.17 30.62 0.16 -2.84 16 10 C -0.13 -4.72 6.08 30.67 0.19 -4.54 16 11 C 0.17 8.29 5.31 86.36 0.46 8.75 16 12 N -0.61 -29.91 2.99 -699.08 -2.09 -32.00 16 13 C -0.26 -14.16 9.59 84.03 0.81 -13.35 16 14 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 15 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 16 N -0.94 -55.24 11.19 21.65 0.24 -54.99 16 17 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.15 6.15 5.60 86.36 0.48 6.64 16 22 C -0.10 -1.95 5.85 31.51 0.18 -1.77 16 23 C -0.08 -1.10 6.76 30.52 0.21 -0.89 16 24 C -0.10 -1.82 6.14 -19.59 -0.12 -1.94 16 25 C -0.11 -1.82 10.04 22.30 0.22 -1.60 16 26 C -0.12 -1.89 10.05 22.24 0.22 -1.66 16 27 C -0.13 -2.47 10.05 22.24 0.22 -2.25 16 28 C -0.12 -2.60 9.47 22.30 0.21 -2.39 16 29 C -0.11 -2.32 4.90 -19.59 -0.10 -2.42 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 33 H 0.41 10.24 5.17 -92.71 -0.48 9.76 16 34 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 2.88 6.04 -2.39 -0.01 2.87 16 41 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.05 2.05 7.14 -2.39 -0.02 2.03 16 45 H 0.10 1.54 7.90 -2.39 -0.02 1.52 16 46 H 0.07 1.64 7.06 -2.39 -0.02 1.62 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 50 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 51 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 52 H 0.11 2.56 5.92 -2.91 -0.02 2.54 16 Total: -1.00 -68.37 401.36 3.48 -64.89 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.42 Total: 26.50 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.11 Total: -8.80 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -4.04 Total: -108.56 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.37 3.48 -64.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592946708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.158 kcal (2) G-P(sol) polarization free energy of solvation -68.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds