Wall clock time and date at job start Wed Apr 1 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.22430 * 2 1 4 4 O 1.21283 * 120.00159 * 239.45961 * 3 2 1 5 5 N 1.34774 * 120.00100 * 59.45752 * 3 2 1 6 6 C 1.46496 * 120.00100 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.50139 * 34.93685 * 6 5 3 8 8 C 1.53050 * 109.49771 * 154.99996 * 6 5 3 9 9 C 1.53044 * 109.53754 * 181.31355 * 8 6 5 10 10 C 1.53188 * 109.31223 * 298.63412 * 9 8 6 11 11 N 1.46929 * 108.77752 * 54.63675 * 10 9 8 12 12 C 1.36942 * 120.63073 * 126.36298 * 11 10 9 13 13 H 1.07995 * 119.99649 * 207.68862 * 12 11 10 14 14 C 1.38808 * 119.99625 * 27.69321 * 12 11 10 15 15 N 1.31612 * 120.00589 * 17.35920 * 14 12 11 16 16 Si 1.86803 * 119.99517 * 197.35643 * 14 12 11 17 17 H 1.48496 * 109.47044 * 60.00287 * 16 14 12 18 18 H 1.48504 * 109.47055 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47371 * 299.99767 * 16 14 12 20 20 C 1.46922 * 118.73749 * 306.39314 * 11 10 9 21 21 C 1.52743 * 109.25262 * 240.54662 * 2 1 3 22 22 C 1.53324 * 108.37930 * 188.55148 * 21 2 1 23 23 C 1.52738 * 108.40149 * 69.84990 * 22 21 2 24 24 C 1.50629 * 110.59372 * 308.92877 * 23 22 21 25 25 C 1.38918 * 117.75385 * 197.42565 * 24 23 22 26 26 C 1.37931 * 120.54116 * 180.89652 * 25 24 23 27 27 C 1.38257 * 119.77813 * 359.46245 * 26 25 24 28 28 C 1.37941 * 119.76977 * 0.38720 * 27 26 25 29 29 C 1.37661 * 122.56484 * 17.81133 * 24 23 22 30 30 H 1.08997 * 109.46834 * 300.54260 * 1 2 3 31 31 H 1.08999 * 109.47363 * 60.54306 * 1 2 3 32 32 H 1.09003 * 109.47181 * 180.54301 * 1 2 3 33 33 H 0.97006 * 120.00017 * 0.02562 * 5 3 2 34 34 H 1.08995 * 109.45587 * 301.33570 * 8 6 5 35 35 H 1.08999 * 109.45929 * 61.30756 * 8 6 5 36 36 H 1.09003 * 109.49146 * 58.58678 * 9 8 6 37 37 H 1.08995 * 109.49537 * 178.68395 * 9 8 6 38 38 H 1.09001 * 109.58341 * 174.41877 * 10 9 8 39 39 H 1.08999 * 109.59410 * 294.84736 * 10 9 8 40 40 H 0.97000 * 120.00484 * 179.97438 * 15 14 12 41 41 H 1.09008 * 109.58335 * 293.81727 * 20 11 10 42 42 H 1.09002 * 109.58815 * 173.39336 * 20 11 10 43 43 H 1.09003 * 109.68096 * 308.27103 * 21 2 1 44 44 H 1.09004 * 109.68150 * 68.83151 * 21 2 1 45 45 H 1.09005 * 109.67894 * 189.57324 * 22 21 2 46 46 H 1.08999 * 109.68257 * 310.08085 * 22 21 2 47 47 H 1.08999 * 109.25176 * 188.63870 * 23 22 21 48 48 H 1.09004 * 109.24801 * 69.21407 * 23 22 21 49 49 H 1.08001 * 119.72349 * 0.62865 * 25 24 23 50 50 H 1.08006 * 120.10910 * 179.72157 * 26 25 24 51 51 H 1.07996 * 120.12060 * 180.10370 * 27 26 25 52 52 H 1.07995 * 119.72782 * 179.75495 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0262 1.4229 0.0000 4 8 2.7298 1.8198 -0.9046 5 7 1.6880 2.2545 1.0052 6 6 2.1699 3.6379 1.0049 7 1 2.2150 4.0073 -0.0195 8 6 1.2148 4.5118 1.8214 9 6 1.6995 5.9632 1.7945 10 6 3.0912 6.0443 2.4294 11 7 3.9807 5.0983 1.7419 12 6 5.1723 5.5187 1.2140 13 1 5.6001 5.0020 0.3676 14 6 5.8301 6.6088 1.7668 15 7 5.5136 7.0255 2.9744 16 14 7.1649 7.4844 0.7966 17 1 6.5919 8.0141 -0.4668 18 1 7.7069 8.6076 1.6028 19 1 8.2567 6.5281 0.4823 20 6 3.5670 3.6929 1.6309 21 6 2.0336 -0.7091 -1.2556 22 6 3.5514 -0.8886 -1.1335 23 6 3.8285 -1.9246 -0.0460 24 6 3.0876 -1.5764 1.2185 25 6 3.5022 -2.1811 2.3985 26 6 2.8529 -1.9179 3.5866 27 6 1.7876 -1.0368 3.6064 28 6 1.3764 -0.4330 2.4363 29 6 2.0268 -0.6993 1.2381 30 1 -0.3633 0.5222 0.8851 31 1 -0.3634 0.5054 -0.8948 32 1 -0.3634 -1.0276 0.0097 33 1 1.1255 1.9370 1.7290 34 1 0.2144 4.4550 1.3924 35 1 1.1889 4.1568 2.8516 36 1 1.7495 6.3109 0.7626 37 1 1.0062 6.5887 2.3566 38 1 3.4825 7.0562 2.3240 39 1 3.0269 5.7835 3.4858 40 1 5.9736 7.7871 3.3608 41 1 3.5413 3.2402 2.6222 42 1 4.2721 3.1533 0.9987 43 1 1.5545 -1.6842 -1.3437 44 1 1.8048 -0.1062 -2.1345 45 1 3.9575 -1.2362 -2.0835 46 1 4.0128 0.0611 -0.8627 47 1 4.8984 -1.9519 0.1602 48 1 3.5049 -2.9058 -0.3936 49 1 4.3370 -2.8662 2.3846 50 1 3.1782 -2.3954 4.4991 51 1 1.2763 -0.8254 4.5339 52 1 0.5417 0.2521 2.4519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008898024.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:50 Heat of formation + Delta-G solvation = -6.694271 kcal Electronic energy + Delta-G solvation = -31577.937786 eV Core-core repulsion = 27734.682683 eV Total energy + Delta-G solvation = -3843.255103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.15360 -38.99534 -37.46714 -35.87246 -34.55680 -33.74524 -32.23386 -30.42818 -30.28820 -29.87284 -28.51943 -26.72122 -25.24845 -23.99494 -22.92602 -22.54967 -22.07932 -21.33658 -20.48700 -19.58603 -18.76350 -17.14532 -16.74924 -16.39534 -15.86059 -15.33366 -14.99443 -14.80485 -14.71292 -14.43665 -14.05952 -13.88937 -13.65970 -13.48063 -13.33731 -13.13704 -12.88632 -12.66003 -12.46664 -12.37277 -12.31369 -12.16699 -11.91531 -11.80397 -11.72064 -11.43125 -11.07423 -10.97485 -10.83407 -10.73996 -10.49954 -10.30851 -10.24129 -10.21766 -9.88100 -9.86422 -9.59298 -9.47871 -8.83120 -8.73363 -8.59917 -8.35172 -6.63256 -5.74644 -3.16346 1.21755 1.28168 2.89423 3.37138 3.43652 3.47885 3.51297 3.73258 4.38230 4.48812 4.54964 4.67521 4.73413 4.86060 4.88915 5.02544 5.10566 5.22770 5.30172 5.32919 5.37462 5.41945 5.44365 5.52772 5.57739 5.59892 5.65827 5.73908 5.75823 5.79571 5.85077 5.91184 5.92346 6.00365 6.12042 6.16785 6.20098 6.27265 6.37981 6.41537 6.45303 6.55716 6.56273 6.63985 6.73130 6.74850 6.88289 6.89952 7.05576 7.38889 7.67416 7.81076 7.86353 8.47349 8.54015 9.26120 9.88636 10.44480 11.34106 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003381 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.510975 B = 8280.188632 C = 8509.360771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 C 0.525 3.475 4 O -0.529 6.529 5 N -0.719 5.719 6 C 0.126 3.874 7 H 0.085 0.915 8 C -0.115 4.115 9 C -0.139 4.139 10 C 0.168 3.832 11 N -0.587 5.587 12 C -0.250 4.250 13 H 0.066 0.934 14 C 0.003 3.997 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.145 3.855 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.083 4.083 24 C -0.064 4.064 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.066 4.066 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.391 0.609 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.018 0.982 40 H 0.254 0.746 41 H 0.016 0.984 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.122 0.878 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 -18.911 -1.561 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.042 4.042 3 C 0.310 3.690 4 O -0.405 6.405 5 N -0.370 5.370 6 C 0.021 3.979 7 H 0.104 0.896 8 C -0.153 4.153 9 C -0.179 4.179 10 C 0.042 3.958 11 N -0.310 5.310 12 C -0.379 4.379 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.549 5.549 16 Si 0.732 3.268 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.017 3.983 21 C -0.131 4.131 22 C -0.162 4.162 23 C -0.120 4.120 24 C -0.064 4.064 25 C -0.139 4.139 26 C -0.135 4.135 27 C -0.138 4.138 28 C -0.135 4.135 29 C -0.067 4.067 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.225 0.775 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.139 0.861 50 H 0.139 0.861 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.852 -18.453 -2.120 22.033 hybrid contribution 0.409 0.326 0.197 0.559 sum -11.443 -18.127 -1.923 21.523 Atomic orbital electron populations 1.21947 0.92102 1.02979 1.02677 1.19706 0.96844 0.92600 0.95038 1.20209 0.80277 0.86571 0.81992 1.90700 1.36883 1.76720 1.36215 1.46203 1.52886 1.12794 1.25123 1.21733 0.96041 0.78894 1.01262 0.89642 1.21680 0.97255 0.96959 0.99400 1.22178 1.00245 0.93863 1.01621 1.20836 0.85642 0.96609 0.92724 1.43990 1.18964 1.01790 1.66259 1.19179 0.97383 1.12740 1.08623 0.91669 1.25000 0.98110 1.01143 0.95303 1.70027 1.44113 1.27579 1.13196 0.86364 0.81686 0.79279 0.79452 1.20986 1.21646 1.20870 1.21147 0.92468 0.87801 0.96840 1.21413 0.96289 0.99629 0.95746 1.21648 0.96114 1.00362 0.98125 1.20547 0.99626 0.99333 0.92521 1.19641 0.95117 0.96167 0.95438 1.21158 1.00115 1.00339 0.92248 1.21080 0.96167 0.98406 0.97848 1.21038 0.97498 0.97379 0.97905 1.21154 0.99958 1.00120 0.92262 1.19214 0.96213 0.97643 0.93611 0.91922 0.91554 0.91260 0.77461 0.93166 0.92366 0.92431 0.92764 0.89262 0.96384 0.93655 0.96657 0.92573 0.91333 0.90472 0.91394 0.89743 0.90708 0.90768 0.86145 0.86100 0.85950 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.84 37.16 0.29 -0.98 16 2 C -0.04 -0.46 0.53 -156.98 -0.08 -0.54 16 3 C 0.52 8.21 6.02 -10.99 -0.07 8.14 16 4 O -0.53 -10.33 13.85 5.56 0.08 -10.26 16 5 N -0.72 -10.83 4.79 -53.69 -0.26 -11.09 16 6 C 0.13 2.33 2.61 -67.81 -0.18 2.15 16 7 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 8 C -0.11 -1.89 5.35 -26.68 -0.14 -2.03 16 9 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 10 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 11 N -0.59 -15.25 3.00 -172.32 -0.52 -15.77 16 12 C -0.25 -7.15 9.58 -15.06 -0.14 -7.30 16 13 H 0.07 1.88 7.89 -52.49 -0.41 1.47 16 14 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 15 N -0.90 -26.62 11.19 55.49 0.62 -26.00 16 16 Si 0.90 22.36 29.59 -169.99 -5.03 17.33 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 C 0.15 3.28 6.09 -3.71 -0.02 3.26 16 21 C -0.09 -1.06 4.36 -26.70 -0.12 -1.17 16 22 C -0.13 -1.52 5.77 -26.70 -0.15 -1.67 16 23 C -0.08 -0.88 5.67 -28.05 -0.16 -1.04 16 24 C -0.06 -0.75 5.74 -104.62 -0.60 -1.35 16 25 C -0.12 -1.30 9.61 -39.44 -0.38 -1.68 16 26 C -0.12 -1.19 10.05 -39.69 -0.40 -1.59 16 27 C -0.12 -1.22 10.05 -39.68 -0.40 -1.62 16 28 C -0.12 -1.25 7.98 -39.44 -0.31 -1.56 16 29 C -0.07 -0.79 4.68 -104.62 -0.49 -1.28 16 30 H 0.06 0.51 5.81 -51.93 -0.30 0.21 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.39 4.85 5.68 -40.82 -0.23 4.62 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 43 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 44 H 0.08 0.93 7.80 -51.93 -0.40 0.53 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.33 6.12 -51.93 -0.32 1.01 16 47 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 50 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 51 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 52 H 0.12 1.06 5.12 -52.49 -0.27 0.79 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -32.45 392.05 -11.35 -43.80 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.53 Total: 5.14 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.62 Total: -9.08 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.15 Total: -52.85 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.45 -11.35 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008898024.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.109 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds