Wall clock time and date at job start Wed Apr 1 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 110.26872 * 2 1 4 4 O 1.21283 * 120.00092 * 237.92670 * 3 2 1 5 5 N 1.34778 * 120.00057 * 57.92799 * 3 2 1 6 6 C 1.46499 * 119.99937 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.47062 * 35.00065 * 6 5 3 8 8 C 1.53003 * 109.47007 * 154.99700 * 6 5 3 9 9 C 1.53005 * 109.47181 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46988 * 300.00414 * 9 8 6 11 11 H 1.09003 * 109.46699 * 299.99828 * 10 9 8 12 12 N 1.46499 * 109.47067 * 179.97438 * 10 9 8 13 13 C 1.36942 * 119.99866 * 154.99261 * 12 10 9 14 14 H 1.07997 * 119.99993 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99937 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99739 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00163 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46797 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.46869 * 120.00118 * 17 15 13 20 20 H 1.48499 * 109.46956 * 240.00447 * 17 15 13 21 21 C 1.53003 * 109.47498 * 59.99780 * 10 9 8 22 22 C 1.52996 * 109.47386 * 274.99855 * 6 5 3 23 23 C 1.54340 * 110.30368 * 237.92579 * 2 1 3 24 24 C 1.54346 * 102.39589 * 267.42084 * 23 2 1 25 25 C 1.51374 * 105.17032 * 333.66122 * 24 23 2 26 26 C 1.38492 * 130.39369 * 197.17944 * 25 24 23 27 27 C 1.38106 * 120.21577 * 179.97438 * 26 25 24 28 28 C 1.38254 * 119.93398 * 0.02562 * 27 26 25 29 29 C 1.38103 * 119.93614 * 359.97438 * 28 27 26 30 30 C 1.38218 * 109.75861 * 17.44763 * 25 24 23 31 31 H 1.08998 * 109.47369 * 182.07450 * 1 2 3 32 32 H 1.09003 * 109.47118 * 302.07873 * 1 2 3 33 33 H 1.09005 * 109.47202 * 62.07382 * 1 2 3 34 34 H 0.96991 * 120.00238 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47457 * 299.99754 * 8 6 5 36 36 H 1.08999 * 109.46912 * 60.00273 * 8 6 5 37 37 H 1.09003 * 109.47260 * 59.99899 * 9 8 6 38 38 H 1.08996 * 109.47341 * 180.02562 * 9 8 6 39 39 H 0.96997 * 120.00330 * 335.00120 * 12 10 9 40 40 H 0.97004 * 119.99876 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.46912 * 59.99819 * 21 10 9 42 42 H 1.08996 * 109.47002 * 180.02562 * 21 10 9 43 43 H 1.09003 * 109.46704 * 300.00191 * 22 6 5 44 44 H 1.08996 * 109.46916 * 59.99910 * 22 6 5 45 45 H 1.08998 * 110.82511 * 149.19486 * 23 2 1 46 46 H 1.09004 * 110.99632 * 25.72282 * 23 2 1 47 47 H 1.08998 * 110.30893 * 214.73848 * 24 23 2 48 48 H 1.08998 * 110.30316 * 92.57637 * 24 23 2 49 49 H 1.08000 * 119.89406 * 0.02562 * 26 25 24 50 50 H 1.08003 * 120.03431 * 180.02562 * 27 26 25 51 51 H 1.07997 * 120.02985 * 179.97438 * 28 27 26 52 52 H 1.08002 * 119.88983 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0520 1.4137 0.0000 4 8 2.7853 1.7893 -0.8900 5 7 1.7041 2.2605 0.9891 6 6 2.2121 3.6346 0.9893 7 1 2.2891 3.9937 -0.0369 8 6 1.2530 4.5328 1.7732 9 6 1.7838 5.9678 1.7741 10 6 3.1650 6.0002 2.4313 11 1 3.0876 5.6408 3.4575 12 7 3.6736 7.3741 2.4316 13 6 4.5943 7.7632 3.3677 14 1 4.9458 7.0571 4.1054 15 6 5.0766 9.0649 3.3676 16 7 4.6485 9.9252 2.4682 17 14 6.3330 9.5955 4.6440 18 1 6.6484 8.4496 5.5342 19 1 7.5719 10.0469 3.9611 20 1 5.7777 10.7116 5.4509 21 6 4.1241 5.1021 1.6474 22 6 3.5935 3.6676 1.6462 23 6 2.0655 -0.7686 -1.2266 24 6 2.2441 -2.1972 -0.6702 25 6 2.4654 -2.0186 0.8165 26 6 2.9847 -2.8916 1.7579 27 6 3.0941 -2.5045 3.0791 28 6 2.6837 -1.2417 3.4642 29 6 2.1656 -0.3697 2.5270 30 6 2.0496 -0.7583 1.2027 31 1 -0.3634 -1.0270 0.0372 32 1 -0.3633 0.5458 0.8708 33 1 -0.3634 0.4813 -0.9080 34 1 1.1174 1.9603 1.7007 35 1 0.2689 4.5094 1.3052 36 1 1.1760 4.1737 2.7995 37 1 1.8613 6.3272 0.7479 38 1 1.1008 6.6075 2.3329 39 1 3.3581 8.0082 1.7689 40 1 4.9852 10.8349 2.4683 41 1 4.2015 5.4614 0.6213 42 1 5.1080 5.1249 2.1160 43 1 3.5163 3.3085 2.6725 44 1 4.2767 3.0278 1.0878 45 1 3.0207 -0.3583 -1.5543 46 1 1.3412 -0.7578 -2.0411 47 1 3.1107 -2.6754 -1.1268 48 1 1.3462 -2.7883 -0.8505 49 1 3.3058 -3.8781 1.4578 50 1 3.4998 -3.1875 3.8107 51 1 2.7682 -0.9375 4.4970 52 1 1.8457 0.6168 2.8286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034799749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:23 Heat of formation + Delta-G solvation = -21.290755 kcal Electronic energy + Delta-G solvation = -30288.917035 eV Core-core repulsion = 26445.028981 eV Total energy + Delta-G solvation = -3843.888054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.31364 -39.42819 -37.98096 -36.12920 -34.88555 -33.28031 -32.18824 -30.55835 -30.39404 -30.07800 -29.00545 -27.31400 -25.68010 -23.73850 -23.01195 -22.48275 -22.11201 -21.34563 -20.66503 -19.98186 -19.19628 -17.48540 -16.94395 -16.36543 -16.27229 -15.68960 -15.38519 -15.18576 -14.77454 -14.67945 -14.04978 -13.95503 -13.75649 -13.65379 -13.55422 -13.33033 -13.08845 -12.85650 -12.73308 -12.60248 -12.49759 -12.01941 -11.93956 -11.81047 -11.71435 -11.44867 -11.36553 -11.10490 -11.02700 -10.99907 -10.81482 -10.74456 -10.64776 -10.13798 -10.08377 -9.84096 -9.73171 -9.55857 -9.10507 -8.94537 -8.83684 -8.81958 -6.91911 -5.73869 -3.02129 1.01755 1.09088 2.57859 3.07732 3.44705 3.47320 3.50327 3.52518 3.99428 4.10223 4.48337 4.56236 4.61315 4.69621 4.74584 4.80681 4.90264 4.94162 5.06136 5.14723 5.19990 5.22815 5.26420 5.31007 5.44981 5.50247 5.54116 5.62493 5.63403 5.66875 5.70027 5.72851 5.75535 5.85431 5.89124 5.90127 5.97069 6.05541 6.14065 6.22552 6.25664 6.29635 6.31467 6.32917 6.51215 6.59001 6.67513 6.68659 6.75193 7.01393 7.17520 7.45718 7.73275 8.18061 8.45106 9.56051 10.14921 10.49399 11.49022 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002370 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.580160 B =11811.678613 C =12608.954617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 C 0.527 3.473 4 O -0.533 6.533 5 N -0.722 5.722 6 C 0.144 3.856 7 H 0.088 0.912 8 C -0.118 4.118 9 C -0.120 4.120 10 C 0.178 3.822 11 H 0.045 0.955 12 N -0.726 5.726 13 C -0.235 4.235 14 H 0.070 0.930 15 C -0.016 4.016 16 N -0.933 5.933 17 Si 0.905 3.095 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.102 4.102 24 C -0.083 4.083 25 C -0.087 4.087 26 C -0.109 4.109 27 C -0.116 4.116 28 C -0.118 4.118 29 C -0.100 4.100 30 C -0.087 4.087 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.395 0.605 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.126 0.874 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 -28.320 -3.232 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.044 4.044 3 C 0.312 3.688 4 O -0.409 6.409 5 N -0.373 5.373 6 C 0.041 3.959 7 H 0.106 0.894 8 C -0.157 4.157 9 C -0.159 4.159 10 C 0.068 3.932 11 H 0.063 0.937 12 N -0.366 5.366 13 C -0.366 4.366 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.582 5.582 17 Si 0.736 3.264 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.173 4.173 22 C -0.161 4.161 23 C -0.140 4.140 24 C -0.120 4.120 25 C -0.087 4.087 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.136 4.136 29 C -0.118 4.118 30 C -0.088 4.088 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.138 0.862 50 H 0.142 0.858 51 H 0.144 0.856 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.477 -27.991 -3.730 30.119 hybrid contribution 0.460 0.439 0.969 1.159 sum -10.018 -27.552 -2.761 29.446 Atomic orbital electron populations 1.21800 0.91345 1.03100 1.02790 1.20369 0.97212 0.92161 0.94644 1.20272 0.80406 0.86589 0.81535 1.90702 1.36211 1.77376 1.36626 1.46256 1.51153 1.12922 1.26997 1.21126 0.93849 0.79799 1.01149 0.89442 1.21750 0.97904 0.96060 0.99998 1.21750 0.98252 0.94253 1.01648 1.20231 0.90062 0.86625 0.96288 0.93658 1.42439 1.50183 1.06594 1.37372 1.19286 1.15429 0.94734 1.07189 0.91205 1.24741 1.00764 0.96450 0.99177 1.69674 1.47154 1.04650 1.36725 0.86143 0.81143 0.78242 0.80852 1.20593 1.21921 1.21926 1.22211 1.00762 0.92809 1.01495 1.21869 0.95542 0.98750 0.99989 1.22333 1.03275 0.93109 0.95288 1.21096 1.02357 0.97759 0.90745 1.20555 0.98086 0.94251 0.95852 1.20625 1.00169 0.99319 0.92612 1.21084 0.99897 0.96563 0.95808 1.21060 0.99151 0.93906 0.99500 1.20683 0.99679 0.99638 0.91773 1.20164 1.00077 0.95260 0.93280 0.91205 0.91922 0.91374 0.77050 0.91897 0.91667 0.91968 0.91381 0.78317 0.93618 0.92519 0.91860 0.92426 0.92447 0.88974 0.89947 0.90315 0.90030 0.86153 0.85788 0.85605 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 8.36 37.16 0.31 -0.64 16 2 C -0.04 -0.39 0.73 -155.78 -0.11 -0.50 16 3 C 0.53 6.64 6.45 -10.99 -0.07 6.57 16 4 O -0.53 -8.87 15.15 5.55 0.08 -8.78 16 5 N -0.72 -8.03 4.42 -53.81 -0.24 -8.27 16 6 C 0.14 1.93 2.46 -67.93 -0.17 1.77 16 7 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 8 C -0.12 -1.47 5.39 -26.73 -0.14 -1.61 16 9 C -0.12 -1.92 5.39 -26.73 -0.14 -2.07 16 10 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 N -0.73 -18.24 5.12 -53.42 -0.27 -18.51 16 13 C -0.24 -6.56 9.93 -15.05 -0.15 -6.71 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 16 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 17 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 21 C -0.13 -2.44 5.50 -26.76 -0.15 -2.59 16 22 C -0.12 -1.86 5.49 -26.76 -0.15 -2.01 16 23 C -0.10 -0.93 5.86 -25.32 -0.15 -1.08 16 24 C -0.08 -0.62 6.76 -26.85 -0.18 -0.80 16 25 C -0.09 -0.79 6.14 -104.20 -0.64 -1.43 16 26 C -0.11 -0.90 10.04 -39.54 -0.40 -1.30 16 27 C -0.12 -0.92 10.05 -39.62 -0.40 -1.32 16 28 C -0.12 -1.01 10.05 -39.63 -0.40 -1.41 16 29 C -0.10 -0.93 9.52 -39.54 -0.38 -1.31 16 30 C -0.09 -0.85 4.91 -104.20 -0.51 -1.36 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.40 7.46 -51.93 -0.39 0.01 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.39 3.39 6.20 -40.82 -0.25 3.14 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.09 1.04 7.02 -51.93 -0.36 0.68 16 46 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 50 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 51 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 52 H 0.12 0.99 6.12 -52.49 -0.32 0.67 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -33.05 406.10 -11.47 -44.52 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.76 Total: 10.11 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -4.11 Total: -15.03 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.21 Total: -54.52 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.05 -11.47 -44.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034799749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.228 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds