Wall clock time and date at job start Wed Apr 1 2020 02:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 119.73940 * 2 1 4 4 C 1.37931 * 120.10149 * 179.97438 * 3 2 1 5 5 C 1.39494 * 119.76253 * 0.02562 * 4 3 2 6 6 C 1.47846 * 120.03611 * 179.97438 * 5 4 3 7 7 O 1.21562 * 119.99764 * 234.25020 * 6 5 4 8 8 N 1.34777 * 120.00448 * 54.25193 * 6 5 4 9 9 C 1.46927 * 120.62520 * 355.80446 * 8 6 5 10 10 C 1.53197 * 108.77193 * 126.37131 * 9 8 6 11 11 C 1.53036 * 109.33933 * 54.61859 * 10 9 8 12 12 H 1.08999 * 109.46191 * 58.67303 * 11 10 9 13 13 N 1.46498 * 109.45720 * 178.62844 * 11 10 9 14 14 C 1.36935 * 120.00429 * 274.99626 * 13 11 10 15 15 H 1.08005 * 119.99755 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00440 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00186 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47205 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46894 * 120.00135 * 18 16 14 21 21 H 1.48496 * 109.47416 * 240.00181 * 18 16 14 22 22 C 1.53039 * 109.54049 * 298.67907 * 11 10 9 23 23 H 1.08997 * 109.50084 * 301.35364 * 22 11 10 24 24 C 1.52994 * 109.50036 * 181.28475 * 22 11 10 25 25 C 1.46927 * 120.63435 * 175.78528 * 8 6 5 26 26 C 1.39769 * 119.91940 * 0.25596 * 5 4 3 27 27 C 1.37980 * 119.76081 * 359.49104 * 26 5 4 28 28 C 1.51392 * 109.76024 * 180.28461 * 27 26 5 29 29 C 1.54346 * 105.17299 * 17.40750 * 28 27 26 30 30 C 1.51352 * 130.40698 * 180.30197 * 26 5 4 31 31 H 1.09001 * 109.47442 * 90.00000 * 1 2 3 32 32 H 1.09002 * 109.47271 * 209.99348 * 1 2 3 33 33 H 1.09003 * 109.47158 * 329.99361 * 1 2 3 34 34 H 1.08004 * 119.94792 * 359.95947 * 3 2 1 35 35 H 1.07999 * 120.11620 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.58735 * 6.58241 * 9 8 6 37 37 H 1.09004 * 109.70374 * 246.22660 * 9 8 6 38 38 H 1.09007 * 109.49383 * 174.58490 * 10 9 8 39 39 H 1.08999 * 109.49362 * 294.64808 * 10 9 8 40 40 H 0.97008 * 119.99994 * 95.00432 * 13 11 10 41 41 H 0.97005 * 120.00038 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46969 * 300.13462 * 24 22 11 43 43 H 1.09004 * 109.46853 * 60.13238 * 24 22 11 44 44 H 1.08996 * 109.47502 * 180.13307 * 24 22 11 45 45 H 1.08999 * 109.58255 * 353.41174 * 25 8 6 46 46 H 1.08996 * 109.58870 * 113.70078 * 25 8 6 47 47 H 1.08999 * 110.30898 * 136.33580 * 28 27 26 48 48 H 1.09005 * 110.30140 * 258.39293 * 28 27 26 49 49 H 1.09007 * 110.82889 * 91.90724 * 29 28 27 50 50 H 1.09004 * 110.83172 * 215.47436 * 29 28 27 51 51 H 1.08999 * 110.44540 * 43.41081 * 30 26 5 52 52 H 1.09004 * 110.18961 * 281.33456 * 30 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2005 0.0000 4 6 3.5721 1.2092 0.0005 5 6 4.2722 0.0026 0.0005 6 6 5.7506 0.0049 0.0005 7 8 6.3593 -0.6092 -0.8539 8 7 6.4236 0.6878 0.9478 9 6 5.7046 1.5089 1.9316 10 6 6.1391 1.0858 3.3384 11 6 7.6635 1.1688 3.4445 12 1 7.9873 2.1878 3.2328 13 7 8.0794 0.7962 4.7989 14 6 8.0902 1.7359 5.7948 15 1 7.7916 2.7518 5.5818 16 6 8.4848 1.3830 7.0779 17 7 8.8491 0.1451 7.3373 18 14 8.4988 2.6649 8.4366 19 1 8.0484 3.9702 7.8903 20 1 7.5822 2.2418 9.5257 21 1 9.8763 2.8016 8.9741 22 6 8.2998 0.2119 2.4337 23 1 7.9578 -0.8043 2.6296 24 6 9.8231 0.2720 2.5625 25 6 7.8899 0.6251 1.0166 26 6 3.5743 -1.2083 -0.0054 27 6 2.1945 -1.2037 -0.0006 28 6 1.6778 -2.6267 -0.0016 29 6 2.8776 -3.4924 0.4382 30 6 4.0829 -2.6338 -0.0007 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8901 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.6477 2.1328 -0.0007 35 1 4.1081 2.1468 0.0001 36 1 4.6311 1.3570 1.8195 37 1 5.9430 2.5611 1.7765 38 1 5.6864 1.7506 4.0742 39 1 5.8164 0.0617 3.5262 40 1 8.3473 -0.1163 4.9902 41 1 9.1245 -0.1016 8.2341 42 1 10.1644 1.2887 2.3677 43 1 10.1142 -0.0221 3.5710 44 1 10.2759 -0.4079 1.8409 45 1 8.2581 -0.1099 0.3008 46 1 8.3088 1.6040 0.7835 47 1 0.8561 -2.7313 0.7068 48 1 1.3520 -2.9101 -1.0025 49 1 2.8768 -3.6356 1.5189 50 1 2.8750 -4.4509 -0.0808 51 1 4.9034 -2.7430 0.7085 52 1 4.4075 -2.9207 -1.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036304549.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:05 Heat of formation + Delta-G solvation = -11.745859 kcal Electronic energy + Delta-G solvation = -30718.005743 eV Core-core repulsion = 26874.531587 eV Total energy + Delta-G solvation = -3843.474156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.90772 -39.50306 -37.53986 -36.04879 -34.58680 -33.47630 -32.52986 -31.45156 -29.39672 -29.23380 -28.21030 -27.63071 -25.91000 -24.91567 -23.13202 -22.25319 -21.68592 -21.31855 -20.98009 -19.69454 -18.88147 -17.12051 -16.92043 -16.48120 -16.11239 -15.52087 -15.19719 -14.89373 -14.66982 -14.43318 -14.03897 -13.89193 -13.74245 -13.53615 -13.38023 -13.30323 -13.05375 -12.82909 -12.50875 -12.46738 -12.34125 -12.12893 -11.91853 -11.67955 -11.58673 -11.42708 -11.39914 -11.23284 -11.15204 -10.98962 -10.94485 -10.80034 -10.60968 -10.39944 -10.17084 -9.77990 -9.69046 -9.61668 -8.92845 -8.73276 -8.65399 -8.43548 -6.96812 -5.78528 -3.07033 0.89299 1.17960 2.71955 3.08961 3.41172 3.46914 3.49141 3.55045 4.17451 4.35076 4.50200 4.56872 4.65798 4.81447 4.86352 4.90067 5.04343 5.10818 5.21919 5.26045 5.31351 5.32991 5.38209 5.44413 5.48830 5.53320 5.53400 5.62854 5.65339 5.68968 5.69373 5.72340 5.78440 5.93480 5.94585 5.97493 6.03042 6.08633 6.14450 6.17290 6.26831 6.32469 6.39842 6.41126 6.43994 6.54664 6.64884 6.74537 6.81823 6.92688 7.06122 7.52102 7.68190 8.23298 8.39709 9.51227 10.08869 10.43819 11.44062 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012798 B = 0.002931 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.335979 B = 9549.940548 C =10204.412745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.126 4.126 4 C -0.086 4.086 5 C -0.113 4.113 6 C 0.560 3.440 7 O -0.543 6.543 8 N -0.598 5.598 9 C 0.099 3.901 10 C -0.150 4.150 11 C 0.184 3.816 12 H 0.048 0.952 13 N -0.720 5.720 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.904 3.096 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.109 4.109 23 H 0.068 0.932 24 C -0.136 4.136 25 C 0.120 3.880 26 C -0.043 4.043 27 C -0.104 4.104 28 C -0.078 4.078 29 C -0.121 4.121 30 C -0.084 4.084 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -1.843 -17.240 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.116 4.116 6 C 0.348 3.652 7 O -0.421 6.421 8 N -0.330 5.330 9 C -0.024 4.024 10 C -0.192 4.192 11 C 0.074 3.926 12 H 0.066 0.934 13 N -0.361 5.361 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.130 4.130 23 H 0.087 0.913 24 C -0.193 4.193 25 C -0.002 4.002 26 C -0.044 4.044 27 C -0.104 4.104 28 C -0.115 4.115 29 C -0.158 4.158 30 C -0.121 4.121 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.867 -2.003 -17.556 23.092 hybrid contribution 0.097 0.598 1.057 1.219 sum -14.770 -1.405 -16.499 22.188 Atomic orbital electron populations 1.20816 0.91141 1.02962 1.02341 1.19579 0.96025 0.91803 0.98416 1.20835 0.93711 0.97448 1.02446 1.21152 0.94331 0.96713 0.98268 1.19404 0.92890 0.93338 1.05984 1.18387 0.87033 0.78540 0.81211 1.90750 1.69617 1.44353 1.37393 1.48104 1.07510 1.47125 1.30270 1.22097 0.96960 0.94200 0.89151 1.22672 1.00771 1.01934 0.93775 1.20190 0.90522 0.96014 0.85880 0.93437 1.42413 1.79095 1.10963 1.03596 1.19259 1.37243 0.91503 0.88776 0.91201 1.24723 1.02275 0.96360 0.97543 1.69670 1.51350 1.16554 1.20452 0.86158 0.77183 0.80640 0.82454 1.20594 1.21950 1.21929 1.21738 0.96770 1.00602 0.93840 0.91305 1.21656 0.93927 1.01041 1.02725 1.21727 0.78452 1.02065 0.97968 1.20449 0.93710 0.94037 0.96179 1.20372 0.93547 0.94779 1.01690 1.21025 0.98424 0.90102 1.01940 1.22327 0.93639 0.98119 1.01754 1.21083 0.98396 0.89807 1.02817 0.91061 0.91397 0.91366 0.85296 0.85168 0.89730 0.91462 0.90628 0.92270 0.78238 0.93589 0.93037 0.90734 0.93822 0.89396 0.91506 0.90621 0.90217 0.90698 0.90364 0.90478 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.86 36.00 0.35 -0.45 16 2 C -0.06 -0.58 5.89 -104.48 -0.62 -1.19 16 3 C -0.13 -1.25 9.67 -39.69 -0.38 -1.63 16 4 C -0.09 -0.98 7.42 -39.23 -0.29 -1.27 16 5 C -0.11 -1.56 4.89 -104.93 -0.51 -2.07 16 6 C 0.56 8.85 6.97 -12.33 -0.09 8.77 16 7 O -0.54 -10.04 16.35 5.31 0.09 -9.95 16 8 N -0.60 -8.92 2.97 -173.87 -0.52 -9.44 16 9 C 0.10 1.37 5.53 -3.71 -0.02 1.35 16 10 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 11 C 0.18 3.50 2.19 -67.89 -0.15 3.35 16 12 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 13 N -0.72 -17.28 4.41 -53.39 -0.24 -17.52 16 14 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 15 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 18 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 C -0.11 -1.83 2.46 -90.50 -0.22 -2.05 16 23 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 24 C -0.14 -2.22 9.02 37.15 0.34 -1.89 16 25 C 0.12 1.81 5.71 -3.71 -0.02 1.79 16 26 C -0.04 -0.56 6.02 -103.82 -0.63 -1.18 16 27 C -0.10 -1.14 6.00 -104.24 -0.62 -1.76 16 28 C -0.08 -0.67 6.26 -26.84 -0.17 -0.83 16 29 C -0.12 -1.08 7.09 -25.32 -0.18 -1.26 16 30 C -0.08 -1.00 6.31 -26.86 -0.17 -1.16 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 7.27 -51.93 -0.38 0.05 16 33 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.13 1.30 7.37 -52.49 -0.39 0.91 16 36 H 0.08 1.07 4.73 -51.93 -0.25 0.83 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.38 9.96 7.51 -40.82 -0.31 9.65 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.43 7.37 -51.93 -0.38 1.05 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.37 7.03 -51.93 -0.36 1.00 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.08 0.55 7.60 -51.93 -0.39 0.16 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 52 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 405.11 15.07 6.10 6.10 Total: -1.00 -31.52 405.11 -11.40 -42.92 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -8.76 Total: 9.00 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -3.78 Total: -11.18 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.03 Total: -53.87 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.52 -11.40 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036304549.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.170 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds