Wall clock time and date at job start Wed Apr 1 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38239 * 119.99833 * 2 1 4 4 C 1.38231 * 119.99589 * 179.97438 * 3 2 1 5 5 C 1.38239 * 120.00260 * 359.95718 * 4 3 2 6 6 C 1.50695 * 120.00022 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47131 * 89.99827 * 6 5 4 8 8 C 1.50703 * 109.46941 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00364 * 359.72630 * 8 7 6 10 10 N 1.34782 * 119.99440 * 180.02562 * 8 7 6 11 11 C 1.47144 * 121.01519 * 359.72015 * 10 8 7 12 12 C 1.53048 * 107.68029 * 122.56188 * 11 10 8 13 13 C 1.51138 * 111.11444 * 54.40329 * 12 11 10 14 14 H 1.09005 * 108.45756 * 185.38850 * 13 12 11 15 15 C 1.53993 * 113.17344 * 304.88132 * 13 12 11 16 16 H 1.09002 * 112.71155 * 284.03345 * 15 13 12 17 17 C 1.56014 * 100.39281 * 163.66503 * 15 13 12 18 18 C 1.54505 * 102.61977 * 323.14273 * 17 15 13 19 19 N 1.46466 * 113.23420 * 65.10066 * 13 12 11 20 20 C 1.36935 * 126.05734 * 29.48154 * 19 13 12 21 21 H 1.08007 * 119.99768 * 353.98204 * 20 19 13 22 22 C 1.38805 * 120.00374 * 173.98654 * 20 19 13 23 23 N 1.31625 * 120.00168 * 6.70868 * 22 20 19 24 24 Si 1.86802 * 120.00110 * 186.71201 * 22 20 19 25 25 H 1.48502 * 109.46968 * 94.98609 * 24 22 20 26 26 H 1.48498 * 109.47169 * 214.98281 * 24 22 20 27 27 H 1.48500 * 109.47094 * 334.98471 * 24 22 20 28 28 C 1.46528 * 121.00885 * 179.44675 * 10 8 7 29 29 C 1.38233 * 119.99862 * 0.27429 * 5 4 3 30 30 C 1.38234 * 119.99763 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46979 * 89.99875 * 1 2 3 32 32 H 1.08997 * 109.47148 * 209.99646 * 1 2 3 33 33 H 1.08997 * 109.47177 * 329.99802 * 1 2 3 34 34 H 1.07994 * 119.99697 * 359.97438 * 3 2 1 35 35 H 1.08005 * 119.99806 * 179.97438 * 4 3 2 36 36 H 1.09001 * 109.47247 * 329.99940 * 6 5 4 37 37 H 1.09001 * 109.47254 * 210.00140 * 6 5 4 38 38 H 1.09001 * 109.46963 * 59.99939 * 7 6 5 39 39 H 1.09001 * 109.47307 * 300.00281 * 7 6 5 40 40 H 1.08997 * 109.81633 * 242.10887 * 11 10 8 41 41 H 1.08998 * 109.81960 * 3.01731 * 11 10 8 42 42 H 1.09004 * 109.14760 * 174.81837 * 12 11 10 43 43 H 1.08999 * 109.15383 * 294.03408 * 12 11 10 44 44 H 1.08998 * 110.78068 * 204.86264 * 17 15 13 45 45 H 1.09000 * 110.94364 * 81.49994 * 17 15 13 46 46 H 1.09000 * 109.90411 * 263.45216 * 18 17 15 47 47 H 1.08994 * 110.05156 * 142.29138 * 18 17 15 48 48 H 0.96998 * 120.00022 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.34765 * 355.82892 * 28 10 8 50 50 H 1.08993 * 109.34769 * 115.37729 * 28 10 8 51 51 H 1.08002 * 120.00078 * 179.72339 * 29 5 4 52 52 H 1.07997 * 119.99917 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0020 6 6 5.7786 0.0000 0.0031 7 6 6.2875 0.0011 1.4461 8 6 7.7946 0.0017 1.4472 9 8 8.4018 -0.0037 0.3974 10 7 8.4675 0.0022 2.6150 11 6 7.7534 0.0083 3.9015 12 6 8.2093 -1.2203 4.6920 13 6 9.7146 -1.2560 4.8225 14 1 9.9971 -2.1915 5.3055 15 6 10.4422 -1.1893 3.4669 16 1 10.4081 -2.1339 2.9241 17 6 11.8807 -0.8114 3.9379 18 6 11.6085 0.1483 5.1177 19 7 10.2523 -0.1476 5.6147 20 6 9.6092 0.4996 6.6359 21 1 8.5777 0.2681 6.8571 22 6 10.2829 1.4531 7.3866 23 7 11.4941 1.8312 7.0365 24 14 9.4707 2.1997 8.8941 25 1 9.8989 1.4565 10.1063 26 1 9.8729 3.6238 9.0189 27 1 7.9948 2.1125 8.7555 28 6 9.9325 -0.0093 2.6420 29 6 3.5805 -1.1971 -0.0029 30 6 2.1982 -1.1972 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 1.6581 2.1324 -0.0004 35 1 4.1205 2.1325 0.0001 36 1 6.1424 0.8896 -0.5111 37 1 6.1424 -0.8904 -0.5098 38 1 5.9238 -0.8885 1.9603 39 1 5.9238 0.8914 1.9590 40 1 7.9969 0.9152 4.4550 41 1 6.6785 -0.0420 3.7278 42 1 7.7648 -1.1906 5.6869 43 1 7.8744 -2.1211 4.1776 44 1 12.4265 -0.3024 3.1435 45 1 12.4248 -1.6938 4.2748 46 1 11.6608 1.1817 4.7751 47 1 12.3383 -0.0172 5.9101 48 1 11.9647 2.4978 7.5609 49 1 10.3118 -0.0922 1.6235 50 1 10.2928 0.9192 3.0847 51 1 4.1205 -2.1325 -0.0063 52 1 1.6581 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036767507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:07 Heat of formation + Delta-G solvation = 1.995456 kcal Electronic energy + Delta-G solvation = -30129.919087 eV Core-core repulsion = 26287.040799 eV Total energy + Delta-G solvation = -3842.878288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.21534 -39.57361 -38.25556 -34.99647 -34.71051 -32.84486 -31.63082 -31.39422 -31.09920 -29.34609 -27.94967 -27.01462 -25.24790 -24.23916 -23.02085 -22.89690 -22.51322 -20.77706 -20.06256 -19.41683 -18.12757 -17.10634 -16.39892 -15.99337 -15.92035 -15.68495 -15.26446 -15.12510 -14.97518 -14.39642 -14.05001 -13.96215 -13.69281 -13.66775 -13.53541 -13.06917 -12.84953 -12.73269 -12.64372 -12.37104 -12.24799 -12.13517 -11.73088 -11.53460 -11.38740 -11.32987 -11.18168 -11.13332 -11.00559 -10.92130 -10.78824 -10.66587 -10.17820 -10.03541 -9.92780 -9.64952 -9.62236 -9.45569 -9.09933 -8.64364 -8.61018 -8.16811 -6.83797 -5.75819 -3.07638 1.13649 1.22899 2.88628 3.31443 3.36588 3.41693 3.44402 3.58998 4.45700 4.50652 4.60102 4.68935 4.83799 4.93972 4.97030 5.05552 5.16690 5.17271 5.26682 5.29050 5.34016 5.36520 5.48171 5.48669 5.52274 5.54449 5.57773 5.62953 5.73856 5.77956 5.88971 5.89417 5.95080 6.03457 6.09490 6.13601 6.24602 6.27330 6.30874 6.35159 6.39973 6.43473 6.50850 6.54256 6.70682 6.77128 6.84224 6.89188 6.95582 7.52705 7.60859 7.78673 7.80889 8.22033 8.45277 9.17354 9.80000 10.48236 11.36693 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.002571 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.895959 B =10889.373963 C =12207.114754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.084 4.084 6 C -0.064 4.064 7 C -0.132 4.132 8 C 0.512 3.488 9 O -0.557 6.557 10 N -0.600 5.600 11 C 0.112 3.888 12 C -0.129 4.129 13 C 0.170 3.830 14 H 0.017 0.983 15 C -0.116 4.116 16 H 0.076 0.924 17 C -0.142 4.142 18 C 0.176 3.824 19 N -0.593 5.593 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.126 3.874 29 C -0.112 4.112 30 C -0.120 4.120 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.045 0.955 48 H 0.252 0.748 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.122 0.878 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.352 -5.149 -13.157 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.084 4.084 6 C -0.102 4.102 7 C -0.172 4.172 8 C 0.300 3.700 9 O -0.436 6.436 10 N -0.332 5.332 11 C -0.010 4.010 12 C -0.168 4.168 13 C 0.063 3.937 14 H 0.035 0.965 15 C -0.137 4.137 16 H 0.094 0.906 17 C -0.181 4.181 18 C 0.051 3.949 19 N -0.319 5.319 20 C -0.354 4.354 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.207 1.207 28 C 0.004 3.996 29 C -0.130 4.130 30 C -0.138 4.138 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.975 -4.956 -13.527 21.511 hybrid contribution -0.300 0.409 1.109 1.219 sum -16.275 -4.547 -12.418 20.970 Atomic orbital electron populations 1.20783 0.91388 1.02710 1.02162 1.19917 0.95986 0.93308 1.00302 1.21022 0.94192 0.97473 1.01032 1.21091 0.94101 0.97779 1.00033 1.19943 0.95691 0.93179 0.99552 1.20334 0.89743 1.04394 0.95699 1.21648 0.92482 1.04485 0.98589 1.20566 0.89942 0.76153 0.83313 1.90650 1.70423 1.51429 1.31113 1.48103 1.07501 1.71648 1.05923 1.21799 0.95033 1.00752 0.83418 1.21592 0.98137 0.96736 1.00337 1.20231 0.91134 0.92335 0.90036 0.96542 1.22659 0.96969 0.97336 0.96710 0.90581 1.23129 0.94927 1.00384 0.99669 1.21254 0.86851 0.95179 0.91606 1.44316 1.13876 1.36575 1.37140 1.18952 0.95074 1.15950 1.05420 0.90326 1.24793 0.96532 0.99705 0.99207 1.69968 1.12606 1.34107 1.39792 0.86194 0.78360 0.78289 0.83483 1.21719 1.21891 1.20653 1.21415 0.78621 0.99175 1.00400 1.21075 0.94086 0.97726 1.00156 1.21014 0.94182 0.97448 1.01108 0.91346 0.91633 0.91621 0.86209 0.85964 0.90249 0.90272 0.88956 0.88941 0.89262 0.90921 0.90589 0.92760 0.92042 0.92340 0.93905 0.93664 0.93781 0.90356 0.90495 0.86010 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.10 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 4 C -0.11 -1.11 9.70 -39.58 -0.38 -1.49 16 5 C -0.08 -0.87 5.13 -104.63 -0.54 -1.40 16 6 C -0.06 -0.72 4.63 -27.88 -0.13 -0.84 16 7 C -0.13 -1.55 4.04 -27.88 -0.11 -1.66 16 8 C 0.51 8.02 7.71 -10.98 -0.08 7.94 16 9 O -0.56 -10.36 15.41 5.56 0.09 -10.28 16 10 N -0.60 -9.85 2.94 -173.28 -0.51 -10.36 16 11 C 0.11 1.76 6.27 -3.67 -0.02 1.74 16 12 C -0.13 -2.12 5.16 -27.64 -0.14 -2.26 16 13 C 0.17 3.29 2.85 -68.37 -0.19 3.10 16 14 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 15 C -0.12 -2.03 3.84 -88.63 -0.34 -2.37 16 16 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 17 C -0.14 -2.60 6.28 -24.33 -0.15 -2.75 16 18 C 0.18 4.07 4.65 -2.74 -0.01 4.06 16 19 N -0.59 -13.88 3.12 -164.50 -0.51 -14.40 16 20 C -0.23 -5.77 9.03 -15.06 -0.14 -5.90 16 21 H 0.08 1.92 6.66 -52.48 -0.35 1.57 16 22 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 23 N -0.92 -26.01 10.42 55.49 0.58 -25.43 16 24 Si 0.91 21.28 29.56 -169.99 -5.02 16.25 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.13 2.25 5.44 -4.16 -0.02 2.22 16 29 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 30 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 37 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 38 H 0.09 0.97 7.79 -51.93 -0.40 0.57 16 39 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 40 H 0.09 1.66 7.48 -51.93 -0.39 1.27 16 41 H 0.07 0.91 5.99 -51.93 -0.31 0.60 16 42 H 0.08 1.29 7.02 -51.93 -0.36 0.92 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.03 7.97 -51.93 -0.41 0.61 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.04 1.10 7.16 -51.93 -0.37 0.73 16 47 H 0.05 1.18 7.42 -51.93 -0.39 0.79 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 50 H 0.08 1.55 6.79 -51.93 -0.35 1.20 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 52 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -30.23 400.66 -11.85 -42.08 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.73 Total: 2.20 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.77 Total: -6.11 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.44 Total: -50.18 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.23 -11.85 -42.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036767507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.073 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds