Wall clock time and date at job start Wed Apr 1 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38253 * 120.00090 * 2 1 4 4 C 1.38217 * 119.99862 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00131 * 359.95113 * 4 3 2 6 6 C 1.38214 * 119.99968 * 0.02606 * 5 4 3 7 7 C 1.50706 * 119.99737 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47021 * 90.00520 * 7 6 5 9 9 C 1.50696 * 109.47040 * 180.02562 * 8 7 6 10 10 O 1.21285 * 120.00174 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99793 * 180.02562 * 9 8 7 12 12 C 1.46598 * 119.75470 * 359.97438 * 11 9 8 13 13 C 1.53881 * 110.67468 * 132.30177 * 12 11 9 14 14 C 1.51886 * 107.33883 * 51.82332 * 13 12 11 15 15 H 1.09001 * 111.56781 * 56.82349 * 14 13 12 16 16 C 1.53698 * 115.01640 * 184.54069 * 14 13 12 17 17 C 1.55304 * 101.81464 * 153.44955 * 16 14 13 18 18 N 1.47267 * 106.87702 * 338.17011 * 17 16 14 19 19 C 1.36936 * 125.92018 * 174.44681 * 18 17 16 20 20 H 1.07994 * 119.99933 * 187.25487 * 19 18 17 21 21 C 1.38806 * 120.00005 * 7.25899 * 19 18 17 22 22 N 1.31619 * 120.00051 * 8.13022 * 21 19 18 23 23 Si 1.86803 * 120.00164 * 188.13274 * 21 19 18 24 24 H 1.48499 * 109.47110 * 94.79634 * 23 21 19 25 25 H 1.48497 * 109.47013 * 214.79938 * 23 21 19 26 26 H 1.48498 * 109.46730 * 334.79619 * 23 21 19 27 27 C 1.45505 * 107.68013 * 353.99227 * 18 17 16 28 28 H 1.08998 * 109.57040 * 274.60070 * 27 18 17 29 29 C 1.47800 * 119.75206 * 180.02562 * 11 9 8 30 30 C 1.38214 * 119.99912 * 180.23350 * 2 1 3 31 31 H 1.09001 * 109.46757 * 89.99958 * 1 2 3 32 32 H 1.08997 * 109.47093 * 209.99853 * 1 2 3 33 33 H 1.08998 * 109.46854 * 330.00108 * 1 2 3 34 34 H 1.08000 * 120.00078 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.99632 * 179.97438 * 4 3 2 36 36 H 1.08004 * 120.00232 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.47496 * 329.99989 * 7 6 5 38 38 H 1.09000 * 109.47160 * 210.00205 * 7 6 5 39 39 H 1.08997 * 109.47419 * 59.99422 * 8 7 6 40 40 H 1.09000 * 109.46483 * 299.99505 * 8 7 6 41 41 H 1.08999 * 109.22554 * 252.59729 * 12 11 9 42 42 H 1.09000 * 109.22395 * 12.00733 * 12 11 9 43 43 H 1.09001 * 109.89181 * 171.23821 * 13 12 11 44 44 H 1.09001 * 109.89210 * 292.34542 * 13 12 11 45 45 H 1.08999 * 110.96374 * 271.58072 * 16 14 13 46 46 H 1.08999 * 110.96209 * 35.28511 * 16 14 13 47 47 H 1.08997 * 109.91791 * 96.90441 * 17 16 14 48 48 H 1.09000 * 109.91970 * 218.00721 * 17 16 14 49 49 H 0.97005 * 120.00304 * 180.02562 * 22 21 19 50 50 H 1.08998 * 110.06296 * 350.45208 * 29 11 9 51 51 H 1.08997 * 110.06483 * 111.90160 * 29 11 9 52 52 H 1.07998 * 120.00260 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 0.0000 6 6 3.5807 -1.1970 0.0004 7 6 4.3342 -2.5021 0.0004 8 6 4.5897 -2.9436 1.4429 9 6 5.3437 -4.2483 1.4428 10 8 5.6466 -4.7737 0.3925 11 7 5.6806 -4.8319 2.6101 12 6 5.3113 -4.1925 3.8765 13 6 4.6709 -5.2129 4.8338 14 6 5.6115 -6.4021 4.9231 15 1 6.6071 -6.1020 5.2499 16 6 5.0884 -7.5835 5.7556 17 6 5.8412 -8.7816 5.1156 18 7 6.2427 -8.3608 3.7626 19 6 7.0222 -9.0794 2.8960 20 1 7.3559 -8.6316 1.9717 21 6 7.3833 -10.3835 3.2055 22 7 6.8498 -10.9843 4.2480 23 14 8.6264 -11.2858 2.1425 24 1 9.9808 -11.1417 2.7342 25 1 8.2668 -12.7249 2.0737 26 1 8.6198 -10.7079 0.7746 27 6 5.6534 -7.0540 3.5132 28 1 4.6374 -7.1772 3.1382 29 6 6.4207 -6.1113 2.6037 30 6 2.1981 -1.1970 -0.0049 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6584 2.1326 0.0004 35 1 4.1205 2.1326 -0.0010 36 1 5.3518 -0.0001 0.0000 37 1 5.2864 -2.3719 -0.5138 38 1 3.7450 -3.2619 -0.5131 39 1 3.6374 -3.0738 1.9571 40 1 5.1789 -2.1838 1.9563 41 1 6.2044 -3.7751 4.3416 42 1 4.6007 -3.3899 3.6794 43 1 4.5438 -4.7669 5.8203 44 1 3.7049 -5.5325 4.4431 45 1 5.3576 -7.4699 6.8058 46 1 4.0101 -7.6939 5.6413 47 1 6.7295 -9.0178 5.7015 48 1 5.1850 -9.6507 5.0696 49 1 7.1024 -11.8955 4.4645 50 1 6.4592 -6.5160 1.5923 51 1 7.4309 -5.9609 2.9844 52 1 1.6582 -2.1323 -0.0091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042167607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:12 Heat of formation + Delta-G solvation = 3.687651 kcal Electronic energy + Delta-G solvation = -29776.316794 eV Core-core repulsion = 25933.511885 eV Total energy + Delta-G solvation = -3842.804909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.29674 -39.62639 -38.28552 -35.40910 -34.56099 -32.89035 -32.58073 -31.28767 -30.45565 -29.08456 -28.42540 -27.17875 -25.19233 -24.63182 -23.25199 -22.27306 -22.18783 -20.63854 -20.07619 -19.66153 -18.74569 -17.16830 -16.67928 -16.40337 -16.02223 -15.61643 -15.25014 -14.93748 -14.83826 -14.37482 -14.13108 -14.04567 -13.74787 -13.68264 -13.33915 -13.09650 -13.03432 -12.98939 -12.59487 -12.54884 -12.41477 -12.26556 -11.91418 -11.78117 -11.53603 -11.42549 -11.30299 -11.14341 -11.01109 -10.88708 -10.80087 -10.75569 -10.11248 -10.00693 -9.87348 -9.70085 -9.59850 -9.42014 -9.01430 -8.80678 -8.60748 -8.39276 -6.82912 -5.71267 -3.06019 1.10272 1.15049 2.80535 3.14665 3.42329 3.48301 3.50295 3.52081 4.38812 4.52198 4.53867 4.62445 4.78694 4.85355 4.90654 4.95967 4.98978 5.02765 5.06576 5.16723 5.26023 5.29742 5.35226 5.40851 5.42513 5.50749 5.55104 5.61876 5.67848 5.71563 5.78318 5.80756 5.91911 5.92310 6.02714 6.04839 6.08537 6.13955 6.17562 6.23432 6.33675 6.39673 6.44513 6.49699 6.56268 6.72752 6.76495 6.78915 7.06789 7.49539 7.61551 7.67262 7.81848 8.25330 8.37241 9.20706 9.83639 10.49719 11.40461 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.002238 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.786998 B =12507.602902 C =13252.667406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.074 4.074 7 C -0.067 4.067 8 C -0.132 4.132 9 C 0.509 3.491 10 O -0.543 6.543 11 N -0.607 5.607 12 C 0.108 3.892 13 C -0.120 4.120 14 C -0.113 4.113 15 H 0.077 0.923 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.591 5.591 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.156 3.844 28 H 0.024 0.976 29 C 0.117 3.883 30 C -0.117 4.117 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.036 0.964 48 H 0.053 0.947 49 H 0.252 0.748 50 H 0.092 0.908 51 H 0.069 0.931 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 24.789 -1.917 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.141 4.141 6 C -0.074 4.074 7 C -0.104 4.104 8 C -0.172 4.172 9 C 0.297 3.703 10 O -0.420 6.420 11 N -0.341 5.341 12 C -0.015 4.015 13 C -0.158 4.158 14 C -0.133 4.133 15 H 0.095 0.905 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.315 5.315 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.047 3.953 28 H 0.041 0.959 29 C -0.005 4.005 30 C -0.135 4.135 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.110 0.890 51 H 0.087 0.913 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.892 24.256 -2.488 26.313 hybrid contribution 0.681 -0.542 -0.321 0.927 sum -9.211 23.714 -2.809 25.595 Atomic orbital electron populations 1.20802 0.91261 1.02793 1.02337 1.19926 0.96043 0.93170 0.99440 1.21009 0.94306 0.97408 1.01884 1.21118 0.94287 0.97952 0.99959 1.21076 0.99931 0.91969 1.01075 1.19943 0.93700 0.95064 0.98716 1.20363 1.00911 0.93477 0.95693 1.21669 1.01372 0.95358 0.98754 1.20640 0.79589 0.86553 0.83562 1.90704 1.55114 1.65231 1.30950 1.48310 1.56420 1.23840 1.05538 1.21732 0.99754 0.95321 0.84697 1.21782 0.99208 0.96187 0.98648 1.22248 0.98710 0.94011 0.98318 0.90491 1.22725 0.99682 0.96876 0.98303 1.21368 0.96743 0.92369 0.84292 1.43975 1.58666 1.14907 1.13991 1.19053 1.22565 0.94030 1.00217 0.90338 1.24801 1.00530 0.96460 0.98455 1.69966 1.45045 1.12722 1.28856 0.86136 0.81100 0.79076 0.79753 1.21640 1.21772 1.20464 1.20983 0.95134 0.86715 0.92446 0.95862 1.21681 0.94501 0.81731 1.02628 1.20988 0.93606 0.97672 1.01201 0.91203 0.91435 0.91621 0.86355 0.86175 0.86062 0.90103 0.90074 0.88895 0.89013 0.91740 0.90277 0.90902 0.91404 0.92332 0.92477 0.94534 0.92936 0.93779 0.89013 0.91318 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.09 -0.72 5.88 -104.62 -0.62 -1.34 16 3 C -0.13 -1.02 9.70 -39.58 -0.38 -1.41 16 4 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 5 C -0.12 -1.09 9.70 -39.59 -0.38 -1.48 16 6 C -0.07 -0.72 5.13 -104.62 -0.54 -1.25 16 7 C -0.07 -0.71 4.64 -27.88 -0.13 -0.84 16 8 C -0.13 -1.38 4.01 -27.88 -0.11 -1.49 16 9 C 0.51 7.71 7.67 -10.99 -0.08 7.62 16 10 O -0.54 -10.45 15.35 5.55 0.09 -10.37 16 11 N -0.61 -9.20 3.01 -172.72 -0.52 -9.72 16 12 C 0.11 1.23 6.22 -3.53 -0.02 1.21 16 13 C -0.12 -1.49 5.72 -26.84 -0.15 -1.65 16 14 C -0.11 -1.89 2.60 -89.56 -0.23 -2.12 16 15 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 16 C -0.14 -2.49 6.54 -25.15 -0.16 -2.65 16 17 C 0.18 4.25 5.41 -2.40 -0.01 4.23 16 18 N -0.59 -14.94 3.31 -163.60 -0.54 -15.48 16 19 C -0.23 -6.43 9.88 -15.06 -0.15 -6.58 16 20 H 0.08 2.15 7.40 -52.49 -0.39 1.77 16 21 C -0.01 -0.17 5.44 -17.43 -0.09 -0.26 16 22 N -0.92 -27.10 10.58 55.49 0.59 -26.51 16 23 Si 0.91 22.47 29.56 -169.99 -5.03 17.44 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.16 3.21 2.79 -67.80 -0.19 3.03 16 28 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 29 C 0.12 2.23 5.64 -3.93 -0.02 2.20 16 30 C -0.12 -1.08 9.36 -39.58 -0.37 -1.45 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 37 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 38 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 39 H 0.09 0.85 7.55 -51.93 -0.39 0.46 16 40 H 0.09 0.80 8.00 -51.93 -0.42 0.39 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.68 5.84 -51.93 -0.30 0.38 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.04 0.96 7.80 -51.93 -0.40 0.55 16 48 H 0.05 1.41 7.25 -51.93 -0.38 1.03 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.09 1.99 6.81 -51.93 -0.35 1.64 16 51 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 52 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 405.87 15.07 6.12 6.12 Total: -1.00 -32.73 405.87 -11.91 -44.65 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.92 Total: -0.22 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.69 Total: -5.90 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.47 Total: -51.71 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.73 -11.91 -44.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042167607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.334 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds