Wall clock time and date at job start Wed Apr 1 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38235 * 119.99862 * 2 1 4 4 C 1.38233 * 119.99355 * 179.78830 * 3 2 1 5 5 C 1.50702 * 119.99927 * 180.23248 * 4 3 2 6 6 C 1.38230 * 120.00484 * 0.42743 * 4 3 2 7 7 C 1.38235 * 119.99888 * 359.52923 * 6 4 3 8 8 C 1.50705 * 120.00311 * 180.25636 * 7 6 4 9 9 C 1.52997 * 109.47194 * 89.99939 * 8 7 6 10 10 C 1.50697 * 109.47232 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99941 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99782 * 180.02562 * 10 9 8 13 13 C 1.47280 * 136.54742 * 0.02562 * 12 10 9 14 14 C 1.54075 * 87.61034 * 151.36613 * 13 12 10 15 15 H 1.08997 * 115.05087 * 142.50401 * 14 13 12 16 16 C 1.53067 * 111.39202 * 273.97253 * 14 13 12 17 17 C 1.53148 * 109.21631 * 142.39485 * 16 14 13 18 18 N 1.46537 * 108.25033 * 301.59404 * 17 16 14 19 19 C 1.36938 * 119.73659 * 236.44020 * 18 17 16 20 20 H 1.08003 * 119.99836 * 25.17161 * 19 18 17 21 21 C 1.38812 * 120.00353 * 205.17177 * 19 18 17 22 22 N 1.31620 * 119.99378 * 14.42618 * 21 19 18 23 23 Si 1.86798 * 120.00343 * 194.42086 * 21 19 18 24 24 H 1.48502 * 109.46718 * 60.00242 * 23 21 19 25 25 H 1.48496 * 109.47052 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47227 * 300.00560 * 23 21 19 27 27 C 1.45695 * 120.52663 * 56.42025 * 18 17 16 28 28 C 1.46466 * 136.54053 * 179.62816 * 12 10 9 29 29 H 1.08996 * 111.44322 * 96.37964 * 28 12 10 30 30 C 1.38234 * 119.99719 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46986 * 270.01952 * 1 2 3 32 32 H 1.08999 * 109.47223 * 30.01822 * 1 2 3 33 33 H 1.08993 * 109.47090 * 150.01861 * 1 2 3 34 34 H 1.07994 * 120.00107 * 0.02562 * 3 2 1 35 35 H 1.09007 * 109.46939 * 270.19617 * 5 4 3 36 36 H 1.09003 * 109.47393 * 30.19174 * 5 4 3 37 37 H 1.08996 * 109.47770 * 150.19576 * 5 4 3 38 38 H 1.08008 * 120.00243 * 179.80878 * 6 4 3 39 39 H 1.08997 * 109.47450 * 209.99980 * 8 7 6 40 40 H 1.09005 * 109.46885 * 330.00071 * 8 7 6 41 41 H 1.09001 * 109.47419 * 300.00499 * 9 8 7 42 42 H 1.09003 * 109.47034 * 59.99717 * 9 8 7 43 43 H 1.09006 * 113.53199 * 266.05146 * 13 12 10 44 44 H 1.09001 * 113.53281 * 36.67835 * 13 12 10 45 45 H 1.08998 * 109.51799 * 262.32141 * 16 14 13 46 46 H 1.09007 * 109.51447 * 22.42163 * 16 14 13 47 47 H 1.09006 * 109.70549 * 61.28062 * 17 16 14 48 48 H 1.08997 * 109.70996 * 181.90043 * 17 16 14 49 49 H 0.97000 * 119.99729 * 179.97438 * 22 21 19 50 50 H 1.09001 * 108.78952 * 80.89273 * 27 18 17 51 51 H 1.09000 * 108.79288 * 199.22633 * 27 18 17 52 52 H 1.08001 * 120.00077 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1970 0.0044 5 6 4.3341 2.5021 0.0097 6 6 4.2717 0.0000 -0.0001 7 6 3.5805 -1.1972 0.0008 8 6 4.3340 -2.5024 0.0017 9 6 4.5890 -2.9430 1.4445 10 6 5.3430 -4.2478 1.4455 11 8 5.6461 -4.7738 0.3955 12 7 5.6796 -4.8307 2.6131 13 6 5.5071 -4.5336 4.0453 14 6 5.5337 -6.0533 4.2977 15 1 6.0473 -6.3609 5.2086 16 6 4.1429 -6.6711 4.1330 17 6 4.2773 -8.0463 3.4726 18 7 4.9442 -7.8714 2.1796 19 6 4.3350 -8.3137 1.0358 20 1 3.2597 -8.4067 0.9980 21 6 5.0995 -8.6426 -0.0752 22 7 6.4000 -8.8054 0.0458 23 14 4.2827 -8.8543 -1.7417 24 1 3.6134 -7.5867 -2.1294 25 1 5.3101 -9.2025 -2.7558 26 1 3.2752 -9.9425 -1.6645 27 6 6.2502 -7.2302 2.1013 28 6 6.3762 -6.0495 3.0310 29 1 7.4258 -5.8534 3.2497 30 6 2.1982 -1.1972 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6582 2.1324 0.0004 35 1 4.5160 2.8208 -1.0167 36 1 3.7449 3.2598 0.5263 37 1 5.2864 2.3698 0.5232 38 1 5.3518 -0.0001 0.0003 39 1 3.7449 -3.2624 -0.5115 40 1 5.2864 -2.3724 -0.5122 41 1 5.1781 -2.1830 1.9578 42 1 3.6366 -3.0729 1.9585 43 1 6.3527 -4.0046 4.4850 44 1 4.5492 -4.0700 4.2813 45 1 3.6751 -6.7810 5.1113 46 1 3.5289 -6.0239 3.5065 47 1 4.8728 -8.7023 4.1076 48 1 3.2886 -8.4793 3.3207 49 1 6.9342 -9.0356 -0.7304 50 1 7.0166 -7.9626 2.3549 51 1 6.4141 -6.8911 1.0785 52 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084759405.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:57 Heat of formation + Delta-G solvation = 38.057174 kcal Electronic energy + Delta-G solvation = -30428.866795 eV Core-core repulsion = 26587.552260 eV Total energy + Delta-G solvation = -3841.314535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.49686 -39.73975 -37.77177 -35.16356 -34.34665 -33.64971 -32.10573 -30.62544 -30.07922 -28.75772 -27.43367 -26.87896 -26.79903 -24.61367 -23.78385 -22.57833 -21.03711 -20.84427 -20.40408 -19.49724 -17.69583 -16.93017 -16.36086 -16.06198 -15.80656 -15.65985 -15.27192 -14.53887 -14.36703 -14.22023 -14.06344 -13.63283 -13.40451 -13.28246 -13.25360 -13.07715 -12.94795 -12.73069 -12.68165 -12.49978 -12.44945 -12.13529 -12.02863 -11.83850 -11.41568 -11.33441 -11.21065 -11.05820 -10.91404 -10.76182 -10.61131 -10.59521 -10.43764 -10.16171 -9.82951 -9.73490 -9.51933 -8.92827 -8.63861 -8.60741 -8.24388 -8.03741 -6.54818 -5.61098 -3.02916 1.27769 1.28192 3.29899 3.34638 3.50343 3.56391 3.59738 3.64829 4.58439 4.63956 4.64531 4.66325 4.72885 4.96730 5.05137 5.16510 5.16777 5.22014 5.25312 5.29336 5.37260 5.42458 5.45480 5.48113 5.51880 5.55856 5.61075 5.63351 5.65312 5.67607 5.69661 5.78269 5.91278 5.94550 6.02608 6.14360 6.17980 6.20243 6.32459 6.38749 6.42606 6.46204 6.48640 6.57204 6.63683 6.65290 6.82161 6.96487 7.03097 7.54744 7.81795 7.98685 8.42871 8.62291 8.85942 9.40310 10.04773 10.52159 11.47115 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.003113 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.893041 B = 8992.892387 C = 9999.901706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.123 4.123 7 C -0.066 4.066 8 C -0.067 4.067 9 C -0.122 4.122 10 C 0.537 3.463 11 O -0.516 6.516 12 N -0.634 5.634 13 C 0.096 3.904 14 C -0.114 4.114 15 H 0.090 0.910 16 C -0.115 4.115 17 C 0.148 3.852 18 N -0.585 5.585 19 C -0.253 4.253 20 H 0.061 0.939 21 C 0.012 3.988 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.166 3.834 28 C 0.119 3.881 29 H 0.069 0.931 30 C -0.121 4.121 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.019 0.981 48 H 0.055 0.945 49 H 0.252 0.748 50 H 0.028 0.972 51 H 0.104 0.896 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 20.451 7.420 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.141 4.141 7 C -0.066 4.066 8 C -0.105 4.105 9 C -0.162 4.162 10 C 0.326 3.674 11 O -0.390 6.390 12 N -0.371 5.371 13 C -0.028 4.028 14 C -0.133 4.133 15 H 0.108 0.892 16 C -0.154 4.154 17 C 0.021 3.979 18 N -0.307 5.307 19 C -0.382 4.382 20 H 0.079 0.921 21 C -0.187 4.187 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.040 3.960 28 C 0.015 3.985 29 H 0.087 0.913 30 C -0.139 4.139 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.046 0.954 51 H 0.122 0.878 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.469 20.225 6.461 21.925 hybrid contribution -0.270 0.063 -0.761 0.809 sum -5.739 20.287 5.700 21.841 Atomic orbital electron populations 1.20790 0.91310 1.02707 1.02275 1.19883 0.95940 0.93072 0.99300 1.20836 0.93483 0.97352 1.03119 1.19863 0.93801 0.95180 0.99552 1.20778 0.99864 0.94110 1.02222 1.20935 0.99685 0.91413 1.02098 1.19951 0.93702 0.95004 0.97934 1.20365 1.00901 0.93390 0.95855 1.21518 1.01136 0.95233 0.98339 1.19938 0.79985 0.85528 0.81970 1.90789 1.54310 1.64070 1.29869 1.49476 1.58071 1.25160 1.04396 1.23287 1.00815 0.97479 0.81223 1.22688 0.98443 0.94247 0.97901 0.89157 1.21840 0.93951 1.00123 0.99517 1.20719 0.96639 0.92474 0.88023 1.43454 1.19415 1.66505 1.01339 1.19034 0.90449 1.38456 0.90268 0.92134 1.24909 0.95663 0.99310 0.98813 1.69997 1.04700 1.51314 1.28882 0.86385 0.78264 0.77761 0.84406 1.21029 1.21715 1.21241 1.20170 0.87102 0.88966 0.99737 1.22463 0.94806 0.87733 0.93485 0.91346 1.20995 0.93661 0.97677 1.01613 0.91218 0.91740 0.91436 0.86477 0.91292 0.91731 0.91566 0.86179 0.89825 0.90198 0.89782 0.89526 0.90680 0.91232 0.92778 0.92172 0.96343 0.92679 0.93806 0.95393 0.87797 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.13 -1.33 9.36 -39.58 -0.37 -1.70 16 4 C -0.08 -0.88 5.88 -104.63 -0.62 -1.49 16 5 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 6 C -0.12 -1.43 9.36 -39.59 -0.37 -1.80 16 7 C -0.07 -0.84 5.13 -104.62 -0.54 -1.38 16 8 C -0.07 -0.98 4.63 -27.88 -0.13 -1.11 16 9 C -0.12 -1.77 5.54 -27.89 -0.15 -1.92 16 10 C 0.54 10.49 8.01 -10.99 -0.09 10.40 16 11 O -0.52 -12.77 15.22 5.56 0.08 -12.69 16 12 N -0.63 -11.46 3.34 -188.12 -0.63 -12.09 16 13 C 0.10 1.27 7.78 -11.56 -0.09 1.18 16 14 C -0.11 -1.73 4.57 -90.47 -0.41 -2.15 16 15 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.11 -1.91 5.69 -26.62 -0.15 -2.06 16 17 C 0.15 3.09 6.46 -3.95 -0.03 3.07 16 18 N -0.58 -15.10 3.03 -175.07 -0.53 -15.63 16 19 C -0.25 -7.30 9.53 -15.06 -0.14 -7.45 16 20 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 21 C 0.01 0.34 4.94 -17.43 -0.09 0.26 16 22 N -0.90 -27.79 10.94 55.49 0.61 -27.18 16 23 Si 0.90 23.62 29.58 -169.99 -5.03 18.59 16 24 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.17 4.19 4.59 -5.57 -0.03 4.16 16 28 C 0.12 2.30 3.98 -78.00 -0.31 1.99 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 C -0.12 -1.49 9.36 -39.58 -0.37 -1.86 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 40 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 49 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.03 0.76 8.00 -51.93 -0.42 0.35 16 51 H 0.10 3.08 4.95 -51.93 -0.26 2.82 16 52 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 412.72 15.07 6.22 6.22 Total: -1.00 -34.74 412.72 -12.08 -46.82 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -9.03 Total: 0.41 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.78 Total: -4.46 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.55 Total: -54.90 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.03 Total: 18.59 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.74 -12.08 -46.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084759405.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.880 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds