Wall clock time and date at job start Wed Apr 1 2020 02:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 110.34623 * 2 1 4 4 O 1.21287 * 119.99900 * 119.32774 * 3 2 1 5 5 N 1.34773 * 120.00331 * 299.32926 * 3 2 1 6 6 C 1.46503 * 120.00492 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47337 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.47153 * 175.44869 * 7 6 5 9 9 C 1.53005 * 115.54825 * 279.32683 * 8 7 6 10 10 N 1.46494 * 109.47280 * 294.94826 * 9 8 7 11 11 C 1.36935 * 120.00138 * 174.37405 * 10 9 8 12 12 H 1.07993 * 119.99991 * 359.97438 * 11 10 9 13 13 C 1.38813 * 120.00252 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99768 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00417 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46897 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47108 * 119.99818 * 15 13 11 18 18 H 1.48497 * 109.47534 * 240.00120 * 15 13 11 19 19 C 1.52999 * 117.49917 * 133.61876 * 8 7 6 20 20 C 1.52999 * 117.49703 * 64.99632 * 8 7 6 21 21 C 1.54340 * 110.30447 * 122.12979 * 2 1 3 22 22 C 1.54339 * 102.39673 * 92.57599 * 21 2 1 23 23 C 1.51375 * 105.16759 * 26.34712 * 22 21 2 24 24 C 1.38492 * 130.39304 * 162.83919 * 23 22 21 25 25 C 1.38107 * 120.21785 * 179.67259 * 24 23 22 26 26 C 1.38258 * 119.92911 * 0.57726 * 25 24 23 27 27 C 1.38097 * 119.93538 * 359.44283 * 26 25 24 28 28 C 1.38221 * 109.75718 * 342.81146 * 23 22 21 29 29 H 1.08995 * 109.47388 * 180.67152 * 1 2 3 30 30 H 1.08997 * 109.47066 * 300.67281 * 1 2 3 31 31 H 1.08997 * 109.47351 * 60.66738 * 1 2 3 32 32 H 0.97009 * 119.99903 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47019 * 300.00079 * 6 5 3 34 34 H 1.09000 * 109.46755 * 59.99655 * 6 5 3 35 35 H 1.08994 * 109.47532 * 295.45278 * 7 6 5 36 36 H 1.09001 * 109.47202 * 55.45291 * 7 6 5 37 37 H 1.08994 * 109.47067 * 54.95099 * 9 8 7 38 38 H 1.09000 * 109.46430 * 174.94834 * 9 8 7 39 39 H 0.97004 * 119.99609 * 354.37698 * 10 9 8 40 40 H 0.96995 * 119.99592 * 179.97438 * 14 13 11 41 41 H 1.08998 * 117.49934 * 359.97438 * 19 8 7 42 42 H 1.09000 * 117.49673 * 145.02158 * 19 8 7 43 43 H 1.08998 * 117.49757 * 214.97917 * 20 8 7 44 44 H 1.09003 * 117.49908 * 359.97438 * 20 8 7 45 45 H 1.09001 * 110.82122 * 210.80615 * 21 2 1 46 46 H 1.09001 * 110.82278 * 334.15114 * 21 2 1 47 47 H 1.09001 * 110.30491 * 145.26887 * 22 21 2 48 48 H 1.09000 * 110.30640 * 267.32546 * 22 21 2 49 49 H 1.08006 * 119.89280 * 359.96957 * 24 23 22 50 50 H 1.07996 * 120.03272 * 180.31865 * 25 24 23 51 51 H 1.08003 * 120.02520 * 179.72047 * 26 25 24 52 52 H 1.07999 * 119.89363 * 180.27790 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 2.7472 1.8027 0.9158 5 7 1.7523 2.2436 -1.0175 6 6 2.2621 3.6171 -1.0178 7 6 1.7774 4.3408 -2.2757 8 6 2.2141 5.8061 -2.2212 9 6 1.3383 6.7244 -1.3664 10 7 0.0019 6.8158 -1.9596 11 6 -0.9928 7.4923 -1.3054 12 1 -0.7923 7.9581 -0.3520 13 6 -2.2592 7.5785 -1.8673 14 7 -2.5037 7.0103 -3.0292 15 14 -3.6164 8.5006 -0.9746 16 1 -3.0883 9.0443 0.3024 17 1 -4.0985 9.6179 -1.8259 18 1 -4.7412 7.5735 -0.6909 19 6 2.8447 6.4026 -3.4811 20 6 3.7155 6.0977 -2.2606 21 6 2.0656 -0.7698 1.2258 22 6 2.2441 -2.1978 0.6682 23 6 2.4655 -2.0177 -0.8184 24 6 2.9845 -2.8900 -1.7607 25 6 3.0874 -2.5042 -3.0828 26 6 2.6823 -1.2389 -3.4657 27 6 2.1650 -0.3676 -2.5275 28 6 2.0552 -0.7549 -1.2023 29 1 -0.3634 -1.0275 0.0120 30 1 -0.3633 0.5242 0.8839 31 1 -0.3634 0.5034 -0.8959 32 1 1.1981 1.9318 -1.7502 33 1 1.8974 4.1402 -0.1339 34 1 3.3519 3.6000 -1.0061 35 1 2.2082 3.8658 -3.1570 36 1 0.6900 4.2875 -2.3292 37 1 1.2612 6.3176 -0.3581 38 1 1.7859 7.7174 -1.3243 39 1 -0.1782 6.3970 -2.8159 40 1 -3.3887 7.0702 -3.4216 41 1 2.9489 5.7510 -4.3487 42 1 2.6356 7.4495 -3.7013 43 1 4.0793 6.9440 -1.6779 44 1 4.3922 5.2456 -2.3249 45 1 3.0207 -0.3597 1.5539 46 1 1.3401 -0.7561 2.0392 47 1 3.1107 -2.6765 1.1243 48 1 1.3469 -2.7896 0.8494 49 1 3.3053 -3.8769 -1.4615 50 1 3.4878 -3.1886 -3.8160 51 1 2.7663 -0.9340 -4.4984 52 1 1.8446 0.6190 -2.8281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:30 Heat of formation + Delta-G solvation = 12.777616 kcal Electronic energy + Delta-G solvation = -29934.181293 eV Core-core repulsion = 26091.770554 eV Total energy + Delta-G solvation = -3842.410738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.21907 -39.13288 -38.22590 -36.15701 -34.87117 -33.91531 -32.44402 -30.76937 -30.17177 -29.74865 -28.81510 -26.02439 -25.61152 -23.72594 -22.97303 -22.75372 -22.04393 -21.53605 -21.06249 -19.84956 -18.44722 -17.30227 -17.02173 -16.32058 -16.12865 -15.60433 -15.41499 -15.21526 -14.88161 -14.70186 -14.39454 -14.28607 -13.87752 -13.55014 -13.38836 -13.27149 -13.12121 -12.81450 -12.65701 -12.61187 -12.44957 -12.22454 -11.89197 -11.87626 -11.64676 -11.42274 -11.37072 -11.11596 -11.04229 -10.98243 -10.92123 -10.85059 -10.58042 -10.12241 -9.90159 -9.81163 -9.62961 -9.31946 -9.07803 -8.96563 -8.84809 -8.78373 -6.89589 -5.76016 -3.03641 1.05716 1.12392 2.64534 3.15594 3.43369 3.49565 3.51320 3.51468 4.04822 4.07277 4.16969 4.55163 4.61830 4.65094 4.74002 4.80027 4.89990 4.95727 5.03237 5.10476 5.16070 5.21867 5.25820 5.30915 5.33612 5.37260 5.52850 5.54644 5.58663 5.63139 5.68829 5.71345 5.74405 5.78111 5.82820 5.92246 5.95288 6.03235 6.17273 6.17733 6.20897 6.23217 6.25514 6.36367 6.43965 6.46857 6.47659 6.57910 6.71550 6.77094 6.85380 7.51131 7.71748 8.22901 8.43230 9.54951 10.13288 10.49175 11.46898 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.002615 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.710324 B =10704.200151 C =11450.450233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.040 4.040 3 C 0.527 3.473 4 O -0.538 6.538 5 N -0.724 5.724 6 C 0.124 3.876 7 C -0.091 4.091 8 C -0.119 4.119 9 C 0.188 3.812 10 N -0.727 5.727 11 C -0.236 4.236 12 H 0.070 0.930 13 C -0.015 4.015 14 N -0.933 5.933 15 Si 0.905 3.095 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.164 4.164 20 C -0.178 4.178 21 C -0.102 4.102 22 C -0.082 4.082 23 C -0.087 4.087 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.101 4.101 28 C -0.087 4.087 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.026 0.974 38 H 0.017 0.983 39 H 0.385 0.615 40 H 0.253 0.747 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.126 0.874 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 -21.242 0.911 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 C 0.312 3.688 4 O -0.415 6.415 5 N -0.375 5.375 6 C 0.001 3.999 7 C -0.129 4.129 8 C -0.120 4.120 9 C 0.060 3.940 10 N -0.371 5.371 11 C -0.367 4.367 12 H 0.088 0.912 13 C -0.210 4.210 14 N -0.582 5.582 15 Si 0.736 3.264 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.201 4.201 20 C -0.215 4.215 21 C -0.139 4.139 22 C -0.119 4.119 23 C -0.087 4.087 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.136 4.136 27 C -0.119 4.119 28 C -0.087 4.087 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.233 0.767 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.218 0.782 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.138 0.862 50 H 0.142 0.858 51 H 0.144 0.856 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.657 -20.827 1.714 24.432 hybrid contribution -1.169 0.335 -0.420 1.287 sum 11.488 -20.492 1.293 23.528 Atomic orbital electron populations 1.21807 0.90968 1.03159 1.03275 1.20380 0.97440 0.91996 0.94534 1.20275 0.80039 0.86686 0.81792 1.90681 1.38230 1.76982 1.35621 1.46168 1.53613 1.13314 1.24445 1.21381 0.98575 0.80418 0.99540 1.21256 1.02899 0.92681 0.96054 1.21559 0.93985 0.95122 1.01293 1.20177 0.85811 0.94054 0.93925 1.42296 1.05403 1.65198 1.24234 1.19280 0.89754 1.25703 1.01954 0.91238 1.24713 0.97615 1.01437 0.97267 1.69673 1.21449 1.49238 1.17872 0.86140 0.82348 0.79149 0.78725 1.20592 1.21925 1.21914 1.22962 1.03523 1.02068 0.91597 1.22972 0.93005 1.03054 1.02487 1.22324 1.03172 0.93019 0.95405 1.21093 1.02377 0.97789 0.90681 1.20560 0.98086 0.94159 0.95915 1.20622 1.00214 0.99297 0.92594 1.21072 1.00111 0.96500 0.95774 1.21050 0.99239 0.93906 0.99430 1.20705 0.99654 0.99801 0.91754 1.20213 0.99813 0.95341 0.93356 0.91158 0.91169 0.91643 0.76650 0.90900 0.91787 0.92039 0.89459 0.95569 0.96569 0.78171 0.93663 0.89353 0.88597 0.88948 0.89285 0.89129 0.89830 0.90361 0.89945 0.86161 0.85816 0.85620 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.38 37.16 0.31 -1.00 16 2 C -0.04 -0.44 0.72 -155.78 -0.11 -0.56 16 3 C 0.53 7.40 6.49 -10.99 -0.07 7.33 16 4 O -0.54 -9.42 15.51 5.55 0.09 -9.34 16 5 N -0.72 -9.39 4.95 -60.29 -0.30 -9.69 16 6 C 0.12 1.78 5.51 -4.04 -0.02 1.76 16 7 C -0.09 -1.33 5.24 -26.73 -0.14 -1.47 16 8 C -0.12 -1.90 1.52 -154.51 -0.23 -2.13 16 9 C 0.19 3.81 6.10 -4.04 -0.02 3.78 16 10 N -0.73 -18.14 5.30 -59.91 -0.32 -18.46 16 11 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 14 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 15 Si 0.90 22.47 29.55 -169.99 -5.02 17.45 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 C -0.16 -2.42 9.90 -26.73 -0.26 -2.69 16 20 C -0.18 -2.40 9.57 -26.73 -0.26 -2.66 16 21 C -0.10 -1.02 5.84 -25.33 -0.15 -1.17 16 22 C -0.08 -0.67 6.76 -26.85 -0.18 -0.85 16 23 C -0.09 -0.84 6.14 -104.20 -0.64 -1.48 16 24 C -0.11 -0.94 10.04 -39.54 -0.40 -1.33 16 25 C -0.12 -0.96 10.05 -39.62 -0.40 -1.36 16 26 C -0.12 -1.05 10.05 -39.63 -0.40 -1.45 16 27 C -0.10 -1.02 9.47 -39.54 -0.37 -1.39 16 28 C -0.09 -0.92 4.90 -104.21 -0.51 -1.43 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.63 7.71 -51.93 -0.40 0.23 16 32 H 0.40 4.43 5.97 -40.82 -0.24 4.18 16 33 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 34 H 0.06 0.91 7.80 -51.93 -0.41 0.51 16 35 H 0.06 0.78 7.94 -51.93 -0.41 0.36 16 36 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 37 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 38 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 39 H 0.38 10.03 7.46 -40.82 -0.30 9.73 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 42 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.09 1.08 7.98 -51.93 -0.41 0.66 16 45 H 0.09 1.07 7.06 -51.93 -0.37 0.70 16 46 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 50 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 51 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 52 H 0.12 1.11 5.92 -52.49 -0.31 0.80 16 LS Contribution 415.92 15.07 6.27 6.27 Total: -1.00 -32.67 415.92 -11.32 -43.99 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -8.65 Total: 12.30 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -4.11 Total: -15.34 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.11 Total: -55.33 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.67 -11.32 -43.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.772 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds