Wall clock time and date at job start Wed Apr 1 2020 02:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 120.00286 * 2 1 4 4 C 1.38217 * 120.00006 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00157 * 359.82251 * 4 3 2 6 6 C 1.38221 * 119.99553 * 0.41139 * 5 4 3 7 7 C 1.50701 * 119.99524 * 179.81289 * 6 5 4 8 8 C 1.50697 * 112.85025 * 125.66796 * 7 6 5 9 9 O 1.21284 * 120.00164 * 113.32549 * 8 7 6 10 10 N 1.34776 * 120.00028 * 293.32868 * 8 7 6 11 11 C 1.46505 * 119.99933 * 354.31066 * 10 8 7 12 12 C 1.46497 * 120.00203 * 174.31044 * 10 8 7 13 13 C 1.53008 * 109.47158 * 269.37787 * 12 10 8 14 14 H 1.09001 * 112.95976 * 64.01922 * 13 12 10 15 15 C 1.53943 * 113.76810 * 292.34116 * 13 12 10 16 16 C 1.53948 * 86.28597 * 222.08914 * 15 13 12 17 17 N 1.47574 * 113.76903 * 195.69438 * 13 12 10 18 18 C 1.36933 * 134.49769 * 318.93325 * 17 13 12 19 19 H 1.08005 * 119.99587 * 5.46054 * 18 17 13 20 20 C 1.38812 * 120.00538 * 185.46194 * 18 17 13 21 21 N 1.31622 * 119.99701 * 5.40047 * 20 18 17 22 22 Si 1.86803 * 120.00190 * 185.39807 * 20 18 17 23 23 H 1.48496 * 109.46945 * 94.99731 * 22 20 18 24 24 H 1.48504 * 109.47143 * 214.99727 * 22 20 18 25 25 H 1.48501 * 109.47105 * 334.99826 * 22 20 18 26 26 C 1.53781 * 113.61477 * 256.86046 * 7 6 5 27 27 C 1.54049 * 86.98782 * 140.02198 * 26 7 6 28 28 C 1.53779 * 113.61605 * 354.46697 * 7 6 5 29 29 C 1.38215 * 119.99935 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47301 * 270.02003 * 1 2 3 31 31 H 1.09001 * 109.47104 * 30.01774 * 1 2 3 32 32 H 1.09003 * 109.47486 * 150.01610 * 1 2 3 33 33 H 1.07997 * 119.99700 * 0.02562 * 3 2 1 34 34 H 1.07998 * 119.99760 * 180.02562 * 4 3 2 35 35 H 1.07993 * 120.00360 * 180.22630 * 5 4 3 36 36 H 1.08995 * 109.46908 * 275.18304 * 11 10 8 37 37 H 1.09003 * 109.46759 * 35.18410 * 11 10 8 38 38 H 1.08996 * 109.46648 * 155.17848 * 11 10 8 39 39 H 1.09002 * 109.47057 * 29.37813 * 12 10 8 40 40 H 1.09004 * 109.47492 * 149.37860 * 12 10 8 41 41 H 1.09000 * 113.74243 * 336.43195 * 15 13 12 42 42 H 1.09000 * 113.74069 * 107.63697 * 15 13 12 43 43 H 1.09003 * 113.76748 * 137.90702 * 16 15 13 44 44 H 1.09003 * 113.77150 * 269.19024 * 16 15 13 45 45 H 0.96998 * 119.99805 * 179.97438 * 21 20 18 46 46 H 1.08998 * 113.61649 * 254.61881 * 26 7 6 47 47 H 1.09002 * 113.61309 * 25.52069 * 26 7 6 48 48 H 1.08999 * 113.62218 * 220.02865 * 27 26 7 49 49 H 1.08992 * 113.68980 * 89.12405 * 27 26 7 50 50 H 1.08993 * 113.61905 * 334.48835 * 28 7 6 51 51 H 1.09006 * 113.61163 * 105.30313 * 28 7 6 52 52 H 1.08002 * 119.99879 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0048 6 6 3.5805 -1.1970 -0.0001 7 6 4.3340 -2.5022 0.0003 8 6 3.9211 -3.4160 1.1252 9 8 3.3522 -4.4590 0.8815 10 7 4.1840 -3.0742 2.4021 11 6 4.9795 -1.8784 2.6914 12 6 3.6744 -3.8983 3.5008 13 6 2.2990 -3.3829 3.9295 14 1 1.5467 -3.4768 3.1463 15 6 2.3357 -1.9935 4.5913 16 6 1.3232 -2.5593 5.6035 17 7 1.8568 -3.8898 5.2430 18 6 1.9176 -5.1039 5.8732 19 1 2.4522 -5.9235 5.4160 20 6 1.2922 -5.2816 7.0997 21 7 0.5525 -4.3182 7.6068 22 14 1.5004 -6.8878 8.0304 23 1 2.6051 -6.7508 9.0132 24 1 0.2397 -7.2129 8.7448 25 1 1.8217 -7.9766 7.0730 26 6 4.3698 -3.1932 -1.3731 27 6 5.8336 -3.5577 -1.0608 28 6 5.8571 -2.3342 -0.1295 29 6 2.1980 -1.1970 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5136 33 1 1.6583 2.1326 0.0004 34 1 4.1205 2.1325 0.0010 35 1 5.3516 -0.0002 0.0089 36 1 6.0396 -2.1277 2.6467 37 1 4.7563 -1.1066 1.9547 38 1 4.7341 -1.5112 3.6879 39 1 3.5874 -4.9329 3.1688 40 1 4.3619 -3.8442 4.3449 41 1 3.3011 -1.7419 5.0303 42 1 1.9338 -1.1978 3.9640 43 1 1.5239 -2.2689 6.6348 44 1 0.2828 -2.4101 5.3145 45 1 0.1152 -4.4424 8.4637 46 1 3.7090 -4.0570 -1.4446 47 1 4.2606 -2.5049 -2.2112 48 1 6.4992 -3.4659 -1.9191 49 1 5.9464 -4.5071 -0.5374 50 1 6.1538 -1.4115 -0.6281 51 1 6.3960 -2.5036 0.8027 52 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691053921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:30 Heat of formation + Delta-G solvation = 71.582176 kcal Electronic energy + Delta-G solvation = -31463.586170 eV Core-core repulsion = 27623.725389 eV Total energy + Delta-G solvation = -3839.860781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.31010 -39.06538 -38.13377 -37.06234 -35.16364 -32.84760 -32.10611 -31.38572 -28.85197 -27.82393 -27.28139 -26.79007 -25.68540 -25.50667 -23.31440 -22.85894 -21.99785 -21.30099 -20.42556 -19.10773 -18.22462 -17.20507 -16.66201 -16.36071 -16.07859 -15.63987 -15.25685 -15.04253 -14.96760 -14.41971 -14.24971 -13.94119 -13.79196 -13.44618 -13.35843 -13.13165 -12.83976 -12.69556 -12.48779 -12.35648 -12.31484 -12.20888 -11.94646 -11.81805 -11.64950 -11.33231 -11.20797 -11.03965 -10.99293 -10.85726 -10.70648 -10.53173 -10.40559 -10.39337 -9.84988 -9.73954 -9.60483 -9.45048 -8.84167 -8.73469 -8.61179 -8.26867 -6.82692 -5.72685 -3.03470 1.20726 1.29546 2.75454 3.17271 3.42229 3.47808 3.49763 3.60521 4.27715 4.43154 4.46022 4.50621 4.59014 4.66552 4.77562 4.86307 5.00993 5.13759 5.19446 5.25465 5.31444 5.38965 5.42366 5.48936 5.50056 5.54547 5.56311 5.59728 5.60417 5.71249 5.73393 5.82288 5.86705 5.90513 5.95790 5.99344 6.02645 6.05480 6.17754 6.23259 6.33191 6.35043 6.45685 6.49128 6.53886 6.67153 6.74585 6.88417 6.89966 7.28064 7.45918 7.60603 7.63843 8.02907 8.38190 9.09897 9.76256 10.66757 11.45509 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.003471 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.015098 B = 8064.994811 C = 9236.718628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.055 4.055 7 C -0.066 4.066 8 C 0.540 3.460 9 O -0.534 6.534 10 N -0.598 5.598 11 C 0.068 3.932 12 C 0.116 3.884 13 C 0.133 3.867 14 H 0.042 0.958 15 C -0.159 4.159 16 C 0.167 3.833 17 N -0.601 5.601 18 C -0.221 4.221 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.112 4.112 27 C -0.141 4.141 28 C -0.132 4.132 29 C -0.105 4.105 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.028 0.972 45 H 0.252 0.748 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.077 0.923 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 13.333 -18.547 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.143 4.143 6 C -0.055 4.055 7 C -0.069 4.069 8 C 0.327 3.673 9 O -0.411 6.411 10 N -0.330 5.330 11 C -0.075 4.075 12 C -0.007 4.007 13 C 0.025 3.975 14 H 0.060 0.940 15 C -0.197 4.197 16 C 0.042 3.958 17 N -0.327 5.327 18 C -0.349 4.349 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.150 4.150 27 C -0.178 4.178 28 C -0.169 4.169 29 C -0.124 4.124 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.113 0.887 51 H 0.096 0.904 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.592 12.524 -18.376 24.219 hybrid contribution -0.147 -0.799 0.700 1.073 sum 9.444 11.725 -17.676 23.219 Atomic orbital electron populations 1.20823 0.91121 1.02621 1.02820 1.19913 0.96201 0.92918 0.98726 1.21029 0.94320 0.97406 1.01352 1.21063 0.94242 0.97733 1.00219 1.21024 0.99916 0.91627 1.01746 1.19281 0.93353 0.92944 0.99961 1.20891 0.96614 0.93233 0.96186 1.19679 0.78805 0.85774 0.83047 1.90696 1.42228 1.24679 1.83496 1.47665 1.52540 1.27169 1.05639 1.22120 0.94502 0.87601 1.03279 1.21796 0.96332 0.95041 0.87554 1.22460 0.93195 0.91760 0.90094 0.94013 1.23770 1.00694 0.95721 0.99494 1.22099 0.93456 0.83289 0.96953 1.46158 1.67785 1.07464 1.11336 1.19046 1.27521 0.87989 1.00340 0.90321 1.24775 0.99123 0.97990 0.98463 1.69847 1.35203 1.32368 1.19414 0.86148 0.77051 0.82972 0.79916 1.21640 1.21760 1.20580 1.22893 0.97501 1.00636 0.93937 1.22872 0.96946 0.98301 0.99688 1.23195 0.93143 0.99579 1.00990 1.20935 0.93531 0.97973 0.99913 0.90725 0.91640 0.91470 0.86231 0.86059 0.85636 0.92944 0.90571 0.90431 0.90309 0.90095 0.91055 0.93345 0.91951 0.95444 0.93759 0.89666 0.89444 0.90970 0.89913 0.88685 0.90405 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.08 -0.87 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 4 C -0.11 -1.02 10.05 -39.58 -0.40 -1.42 16 5 C -0.13 -1.17 7.54 -39.58 -0.30 -1.47 16 6 C -0.06 -0.63 3.82 -104.62 -0.40 -1.03 16 7 C -0.07 -0.78 0.49 -156.00 -0.08 -0.85 16 8 C 0.54 8.52 5.95 -10.99 -0.07 8.46 16 9 O -0.53 -10.54 15.50 5.55 0.09 -10.45 16 10 N -0.60 -9.16 2.83 -181.57 -0.51 -9.67 16 11 C 0.07 0.80 8.80 59.85 0.53 1.32 16 12 C 0.12 2.19 5.36 -4.04 -0.02 2.17 16 13 C 0.13 2.85 4.56 -66.86 -0.30 2.54 16 14 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.16 -3.05 6.96 -25.79 -0.18 -3.22 16 16 C 0.17 4.04 7.35 -2.85 -0.02 4.02 16 17 N -0.60 -15.69 3.58 -169.72 -0.61 -16.30 16 18 C -0.22 -6.31 10.50 -15.06 -0.16 -6.47 16 19 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.84 11.66 55.49 0.65 -27.19 16 22 Si 0.91 22.63 29.56 -169.99 -5.02 17.60 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.11 -1.23 7.11 -25.78 -0.18 -1.41 16 27 C -0.14 -1.35 7.81 -25.78 -0.20 -1.56 16 28 C -0.13 -1.19 5.73 -25.92 -0.15 -1.34 16 29 C -0.11 -1.34 9.01 -39.59 -0.36 -1.70 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.90 5.92 -52.49 -0.31 0.59 16 36 H 0.05 0.51 6.95 -51.93 -0.36 0.15 16 37 H 0.08 0.81 3.92 -51.93 -0.20 0.60 16 38 H 0.08 0.93 6.11 -51.93 -0.32 0.61 16 39 H 0.08 1.66 7.33 -51.93 -0.38 1.28 16 40 H 0.08 1.51 8.08 -51.93 -0.42 1.09 16 41 H 0.07 1.28 6.83 -51.93 -0.35 0.92 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.62 7.57 -51.93 -0.39 1.23 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.08 1.11 7.35 -51.93 -0.38 0.72 16 47 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 0.66 6.18 -51.93 -0.32 0.34 16 51 H 0.08 0.70 5.98 -51.93 -0.31 0.39 16 52 H 0.12 1.72 7.99 -52.49 -0.42 1.30 16 LS Contribution 402.16 15.07 6.06 6.06 Total: -1.00 -33.49 402.16 -10.73 -44.22 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.36 Total: 1.85 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.02 Total: -6.11 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.47 Total: -53.16 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.49 -10.73 -44.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691053921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.801 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds