Wall clock time and date at job start Wed Apr 1 2020 02:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.99688 * 2 1 4 4 C 1.38215 * 119.99830 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00611 * 0.02562 * 5 4 3 7 7 C 1.38209 * 120.00572 * 180.02562 * 2 1 3 8 8 C 1.50706 * 119.99657 * 0.28215 * 7 2 1 9 9 H 1.09003 * 115.54811 * 333.99815 * 8 7 2 10 10 C 1.52994 * 117.49909 * 188.33108 * 8 7 2 11 11 C 1.52992 * 117.49958 * 119.70892 * 8 7 2 12 12 H 1.09001 * 117.50225 * 359.97438 * 11 8 7 13 13 C 1.50707 * 117.49715 * 214.97693 * 11 8 7 14 14 O 1.21282 * 119.99929 * 0.02562 * 13 11 8 15 15 N 1.34773 * 119.99997 * 179.97438 * 13 11 8 16 16 C 1.46500 * 120.00382 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47444 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.49852 * 305.00107 * 17 16 15 19 19 C 1.53040 * 109.49555 * 184.93877 * 17 16 15 20 20 C 1.53036 * 109.53802 * 178.68567 * 19 17 16 21 21 C 1.53194 * 109.31323 * 61.36070 * 20 19 17 22 22 N 1.46921 * 108.77529 * 305.36754 * 21 20 19 23 23 C 1.36942 * 120.63175 * 233.60524 * 22 21 20 24 24 H 1.07997 * 120.00191 * 151.84635 * 23 22 21 25 25 C 1.38816 * 120.00029 * 331.84556 * 23 22 21 26 26 N 1.31622 * 119.99604 * 343.07094 * 25 23 22 27 27 Si 1.86792 * 119.99896 * 163.06557 * 25 23 22 28 28 H 1.48501 * 109.47283 * 90.00167 * 27 25 23 29 29 H 1.48510 * 109.47063 * 210.00148 * 27 25 23 30 30 H 1.48494 * 109.47423 * 330.00016 * 27 25 23 31 31 C 1.46932 * 118.76729 * 53.59113 * 22 21 20 32 32 H 1.09001 * 109.47138 * 269.95527 * 1 2 3 33 33 H 1.08994 * 109.47541 * 29.95435 * 1 2 3 34 34 H 1.09003 * 109.47125 * 149.95786 * 1 2 3 35 35 H 1.07997 * 119.99780 * 0.02562 * 3 2 1 36 36 H 1.07997 * 119.99487 * 180.02562 * 4 3 2 37 37 H 1.08005 * 119.99778 * 179.97438 * 5 4 3 38 38 H 1.07992 * 120.00410 * 179.97438 * 6 5 4 39 39 H 1.09004 * 117.49872 * 0.02562 * 10 8 7 40 40 H 1.09004 * 117.50595 * 144.99151 * 10 8 7 41 41 H 0.97002 * 120.00341 * 359.97438 * 15 13 11 42 42 H 1.08996 * 109.47070 * 300.00623 * 16 15 13 43 43 H 1.09002 * 109.46788 * 59.99853 * 16 15 13 44 44 H 1.09005 * 109.45887 * 298.70081 * 19 17 16 45 45 H 1.09000 * 109.46381 * 58.66123 * 19 17 16 46 46 H 1.08995 * 109.50170 * 181.31185 * 20 19 17 47 47 H 1.09000 * 109.49486 * 301.41163 * 20 19 17 48 48 H 1.09004 * 109.58490 * 65.15572 * 21 20 19 49 49 H 1.09001 * 109.58762 * 185.43308 * 21 20 19 50 50 H 0.97003 * 119.99497 * 179.97438 * 26 25 23 51 51 H 1.09003 * 109.61878 * 186.64269 * 31 22 21 52 52 H 1.08997 * 109.56332 * 66.20948 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2716 0.0001 0.0005 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 -0.0005 8 6 1.4447 -2.5020 -0.0075 9 1 0.4423 -2.4685 0.4194 10 6 2.2535 -3.7857 0.1888 11 6 1.6790 -3.4467 -1.1880 12 1 2.3777 -3.1240 -1.9598 13 6 0.5060 -4.2598 -1.6719 14 8 -0.5729 -4.1505 -1.1289 15 7 0.6557 -5.1076 -2.7088 16 6 -0.4843 -5.8985 -3.1790 17 6 -0.0478 -6.7726 -4.3564 18 1 0.3946 -6.1456 -5.1306 19 6 -1.2640 -7.5061 -4.9265 20 6 -0.8342 -8.3553 -6.1248 21 6 0.1885 -9.3992 -5.6653 22 7 1.2944 -8.7107 -4.9860 23 6 2.5901 -8.9152 -5.3790 24 1 3.3269 -8.1386 -5.2358 25 6 2.9567 -10.1208 -5.9615 26 7 2.1767 -11.1741 -5.8405 27 14 4.5567 -10.2480 -6.9169 28 1 5.6527 -10.6445 -5.9967 29 1 4.4148 -11.2687 -7.9864 30 1 4.8747 -8.9323 -7.5275 31 6 0.9843 -7.7980 -3.8770 32 1 -0.3633 -0.0008 1.0277 33 1 -0.3634 0.8903 -0.5131 34 1 -0.3633 -0.8896 -0.5145 35 1 1.6582 2.1327 0.0004 36 1 4.1203 2.1328 0.0010 37 1 5.3517 0.0001 0.0005 38 1 4.1207 -2.1321 -0.0010 39 1 3.3306 -3.6863 0.3235 40 1 1.7835 -4.5968 0.7450 41 1 1.5184 -5.1942 -3.1439 42 1 -0.8445 -6.5334 -2.3695 43 1 -1.2832 -5.2296 -3.4990 44 1 -1.6916 -8.1513 -4.1589 45 1 -2.0102 -6.7785 -5.2459 46 1 -1.7048 -8.8592 -6.5446 47 1 -0.3840 -7.7139 -6.8824 48 1 -0.2864 -10.0969 -4.9754 49 1 0.5696 -9.9427 -6.5299 50 1 2.4327 -12.0164 -6.2478 51 1 1.8920 -7.2830 -3.5621 52 1 0.5749 -8.3652 -3.0411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267151761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:59 Heat of formation + Delta-G solvation = 15.675925 kcal Electronic energy + Delta-G solvation = -29178.934389 eV Core-core repulsion = 25336.649331 eV Total energy + Delta-G solvation = -3842.285058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.51792 -39.42524 -37.91589 -36.48303 -34.76996 -33.10512 -32.98856 -30.94936 -30.47044 -30.30541 -27.17662 -26.13791 -25.30301 -24.25393 -23.59575 -22.09712 -21.66935 -20.96105 -20.53377 -19.98105 -19.02787 -17.63030 -16.85882 -16.53755 -15.93857 -15.49789 -15.33124 -15.05615 -14.85860 -14.52917 -14.20319 -14.08890 -13.88126 -13.66403 -13.44559 -13.32962 -12.80660 -12.71820 -12.51761 -12.40065 -12.35442 -12.27535 -12.19138 -12.10940 -11.42655 -11.30462 -11.16243 -11.04406 -10.89162 -10.71794 -10.64881 -10.51584 -10.26302 -10.19996 -9.98427 -9.86488 -9.57336 -9.44114 -9.02674 -8.92906 -8.71054 -8.49041 -6.69505 -5.81717 -3.24696 1.02656 1.12560 2.50901 3.15112 3.34448 3.41872 3.42403 3.43600 3.84688 4.31913 4.45575 4.49156 4.58989 4.66373 4.69573 4.77722 4.91451 5.00261 5.06993 5.10431 5.28422 5.29067 5.38463 5.42199 5.43172 5.45231 5.46352 5.59995 5.62916 5.70312 5.81200 5.81657 5.85047 5.94110 5.95617 5.98899 6.21912 6.24767 6.26271 6.31327 6.35808 6.42477 6.51198 6.57372 6.68538 6.74674 6.75749 6.84018 6.94449 7.37636 7.59496 7.65241 7.75816 8.27736 8.41888 9.18136 9.81653 10.38598 11.26601 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.002184 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.633550 B =12818.743707 C =14247.242887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.086 4.086 9 H 0.128 0.872 10 C -0.144 4.144 11 C -0.176 4.176 12 H 0.125 0.875 13 C 0.541 3.459 14 O -0.548 6.548 15 N -0.718 5.718 16 C 0.127 3.873 17 C -0.117 4.117 18 H 0.073 0.927 19 C -0.100 4.100 20 C -0.142 4.142 21 C 0.169 3.831 22 N -0.591 5.591 23 C -0.254 4.254 24 H 0.064 0.936 25 C 0.002 3.998 26 N -0.901 5.901 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.289 1.289 30 H -0.279 1.279 31 C 0.154 3.846 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.404 0.596 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.017 0.983 49 H 0.086 0.914 50 H 0.254 0.746 51 H 0.050 0.950 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 21.436 10.734 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.053 4.053 8 C -0.104 4.104 9 H 0.146 0.854 10 C -0.181 4.181 11 C -0.197 4.197 12 H 0.143 0.857 13 C 0.327 3.673 14 O -0.426 6.426 15 N -0.368 5.368 16 C 0.004 3.996 17 C -0.138 4.138 18 H 0.091 0.909 19 C -0.138 4.138 20 C -0.181 4.181 21 C 0.044 3.956 22 N -0.314 5.314 23 C -0.384 4.384 24 H 0.082 0.918 25 C -0.196 4.196 26 N -0.545 5.545 27 Si 0.731 3.269 28 H -0.214 1.214 29 H -0.215 1.215 30 H -0.205 1.205 31 C 0.027 3.973 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.239 0.761 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.035 0.965 49 H 0.104 0.896 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.658 21.301 11.028 24.044 hybrid contribution 1.337 -0.211 -0.840 1.593 sum -0.321 21.091 10.189 23.425 Atomic orbital electron populations 1.20877 0.91037 1.03324 1.02523 1.19758 0.96238 0.92333 0.99069 1.21030 0.94281 0.97373 1.01168 1.21136 0.94310 0.98072 1.00391 1.21107 0.99866 0.92423 1.00807 1.21086 0.93552 0.98438 1.00269 1.19005 0.93013 0.92739 1.00567 1.21077 1.00864 0.87927 1.00533 0.85397 1.23138 1.00411 0.98674 0.95855 1.22355 1.00362 1.03333 0.93691 0.85739 1.19555 0.88561 0.79436 0.79718 1.90676 1.27600 1.67025 1.57279 1.46001 1.14700 1.42294 1.33833 1.21473 0.87882 0.93280 0.97008 1.21953 0.98461 0.97322 0.96077 0.90888 1.21342 0.95800 0.98204 0.98440 1.22172 0.99547 0.99499 0.96879 1.20788 0.86395 0.91058 0.97402 1.44034 1.02952 1.50378 1.34014 1.19137 0.86172 0.97029 1.36015 0.91804 1.25051 0.97869 0.94851 1.01853 1.70040 1.38398 0.99985 1.46126 0.86320 0.83377 0.77383 0.79811 1.21398 1.21549 1.20496 1.20896 0.94993 0.90857 0.90506 0.91058 0.91620 0.90601 0.86082 0.86185 0.86064 0.85721 0.87373 0.87588 0.76079 0.91597 0.92001 0.92479 0.93450 0.93174 0.92758 0.96464 0.89582 0.93615 0.93135 0.96383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.33 36.00 0.34 -0.69 16 2 C -0.07 -0.70 5.88 -104.62 -0.62 -1.32 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 4 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 5 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 6 C -0.12 -1.03 9.30 -39.58 -0.37 -1.40 16 7 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16 8 C -0.09 -0.87 4.66 -91.78 -0.43 -1.30 16 9 H 0.13 1.45 6.44 -51.93 -0.33 1.11 16 10 C -0.14 -1.33 9.56 -26.74 -0.26 -1.59 16 11 C -0.18 -1.87 5.82 -91.78 -0.53 -2.40 16 12 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 13 C 0.54 7.38 7.61 -10.98 -0.08 7.30 16 14 O -0.55 -9.21 16.26 5.56 0.09 -9.12 16 15 N -0.72 -9.48 5.33 -60.29 -0.32 -9.80 16 16 C 0.13 1.84 5.07 -4.04 -0.02 1.82 16 17 C -0.12 -1.90 2.37 -90.50 -0.21 -2.12 16 18 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 19 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 20 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 21 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 22 N -0.59 -14.37 2.99 -172.31 -0.52 -14.89 16 23 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 24 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 25 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 26 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 27 Si 0.90 21.27 29.59 -169.99 -5.03 16.25 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 31 C 0.15 3.06 5.60 -3.71 -0.02 3.04 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.08 0.74 6.64 -51.93 -0.34 0.39 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 38 H 0.12 0.93 6.02 -52.49 -0.32 0.61 16 39 H 0.11 0.80 6.18 -51.93 -0.32 0.48 16 40 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.40 4.81 7.70 -40.82 -0.31 4.50 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 50 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.05 0.96 7.14 -51.93 -0.37 0.59 16 52 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -31.22 410.68 -12.11 -43.33 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.63 Total: 4.76 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -4.52 Total: -11.50 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.22 Total: -49.91 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.22 -12.11 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267151761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.008 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds