Wall clock time and date at job start Wed Apr 1 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47366 * 2 1 4 4 C 1.38399 * 119.83115 * 89.99576 * 3 2 1 5 5 C 1.37889 * 120.17412 * 180.02562 * 4 3 2 6 6 C 1.39830 * 119.82400 * 359.97438 * 5 4 3 7 7 C 1.43205 * 120.16979 * 180.02562 * 6 5 4 8 8 C 6.88303 * 109.44734 * 359.97438 * 2 1 3 9 9 C 8.31508 * 109.44523 * 359.97438 * 2 1 3 10 10 O 1.21704 * 119.99879 * 87.08727 * 9 8 7 11 11 N 1.34777 * 120.00084 * 267.08695 * 9 8 7 12 12 C 1.46504 * 119.99854 * 359.97438 * 11 9 8 13 13 C 1.50696 * 109.46729 * 90.00501 * 12 11 9 14 14 H 1.08005 * 120.00525 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99882 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99858 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99996 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46987 * 89.99974 * 17 15 13 19 19 H 1.48493 * 109.47416 * 210.00027 * 17 15 13 20 20 H 1.48496 * 109.47305 * 330.00273 * 17 15 13 21 21 C 1.46496 * 119.99875 * 180.02562 * 11 9 8 22 22 C 1.53000 * 109.47381 * 89.99618 * 21 11 9 23 23 C 1.53006 * 109.47212 * 179.97438 * 22 21 11 24 24 N 1.46897 * 109.46999 * 179.97438 * 23 22 21 25 25 C 1.46903 * 110.99957 * 66.05044 * 24 23 22 26 26 C 1.46901 * 110.99813 * 190.00160 * 24 23 22 27 27 C 1.39838 * 119.66409 * 0.27674 * 6 5 4 28 28 C 1.37900 * 119.82224 * 359.46863 * 27 6 5 29 29 H 1.08991 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47273 * 300.00576 * 1 2 3 31 31 H 1.09001 * 109.47388 * 59.99844 * 1 2 3 32 32 H 1.08991 * 109.47245 * 239.99769 * 2 1 3 33 33 H 1.09001 * 109.47058 * 119.99257 * 2 1 3 34 34 H 1.08006 * 119.91158 * 0.02894 * 4 3 2 35 35 H 1.08000 * 120.08333 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46664 * 209.99875 * 12 11 9 37 37 H 1.08997 * 109.47355 * 330.00349 * 12 11 9 38 38 H 0.97005 * 119.99791 * 179.97438 * 16 15 13 39 39 H 1.09008 * 109.47018 * 209.99650 * 21 11 9 40 40 H 1.09003 * 109.47519 * 329.99724 * 21 11 9 41 41 H 1.08997 * 109.47467 * 299.99832 * 22 21 11 42 42 H 1.09000 * 109.46955 * 60.00067 * 22 21 11 43 43 H 1.08997 * 109.47040 * 300.00427 * 23 22 21 44 44 H 1.09004 * 109.46747 * 59.99846 * 23 22 21 45 45 H 1.08997 * 109.47041 * 59.99547 * 25 24 23 46 46 H 1.09000 * 109.47297 * 179.97438 * 25 24 23 47 47 H 1.09004 * 109.47049 * 299.99698 * 25 24 23 48 48 H 1.08998 * 109.47095 * 59.99890 * 26 24 23 49 49 H 1.09002 * 109.47018 * 180.02562 * 26 24 23 50 50 H 1.09004 * 109.47096 * 300.00195 * 26 24 23 51 51 H 1.08000 * 120.09553 * 179.71743 * 27 6 5 52 52 H 1.07995 * 119.91302 * 180.23575 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2618 2.0700 1.2006 5 6 2.7210 3.3701 1.2089 6 6 2.9553 4.0326 -0.0001 7 6 3.4327 5.3827 -0.0001 8 6 3.8216 6.4903 -0.0029 9 6 4.2981 7.8408 -0.0035 10 8 4.5509 8.3964 -1.0564 11 7 4.4666 8.4965 1.1619 12 6 4.1617 7.8278 2.4293 13 6 5.3951 7.1261 2.9363 14 1 6.3141 7.1730 2.3709 15 6 5.3504 6.4240 4.1222 16 7 6.4270 5.8120 4.5649 17 14 3.7612 6.3434 5.1005 18 1 2.9690 5.1665 4.6617 19 1 4.0758 6.2171 6.5463 20 1 2.9754 7.5823 4.8713 21 6 4.9535 9.8782 1.1612 22 6 3.7643 10.8380 1.0879 23 6 4.2729 12.2811 1.0878 24 7 3.1311 13.2026 1.0168 25 6 2.3121 13.1208 2.2336 26 6 3.5807 14.5803 0.7764 27 6 2.7161 3.3718 -1.2090 28 6 2.2620 2.0697 -1.2007 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.0808 1.5567 2.1335 35 1 2.8991 3.8754 2.1466 36 1 3.8376 8.5675 3.1614 37 1 3.3669 7.0985 2.2733 38 1 6.3957 5.3184 5.3994 39 1 5.5159 10.0657 2.0760 40 1 5.6006 10.0350 0.2982 41 1 3.2019 10.6506 0.1732 42 1 3.1172 10.6813 1.9509 43 1 4.8350 12.4682 2.0026 44 1 4.9203 12.4381 0.2250 45 1 2.9202 13.3837 3.0991 46 1 1.4741 13.8134 2.1548 47 1 1.9345 12.1049 2.3498 48 1 4.1255 14.6254 -0.1666 49 1 2.7156 15.2417 0.7288 50 1 4.2348 14.8961 1.5893 51 1 2.8904 3.8783 -2.1468 52 1 2.0804 1.5567 -2.1335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292554790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:27 Heat of formation + Delta-G solvation = 34.923890 kcal Electronic energy + Delta-G solvation = -28662.178187 eV Core-core repulsion = 24820.727783 eV Total energy + Delta-G solvation = -3841.450404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -39.41875 -39.25526 -37.63159 -35.34790 -34.91236 -33.02830 -32.55221 -31.54999 -30.96339 -29.20589 -28.08526 -27.63719 -26.33512 -24.54173 -23.19562 -22.70472 -22.61443 -21.44380 -20.79517 -20.21089 -17.75059 -17.06048 -16.73519 -16.07101 -15.58300 -15.53841 -15.47069 -15.17164 -14.85618 -14.44916 -14.17944 -13.97874 -13.90565 -13.82485 -13.55202 -13.34459 -13.19273 -12.67306 -12.56641 -12.45665 -12.28567 -12.15288 -11.99941 -11.84649 -11.73491 -11.51639 -11.37191 -11.27710 -11.08604 -10.99500 -10.96693 -10.74393 -10.59907 -10.36356 -10.29774 -10.06316 -9.65975 -9.58844 -8.93092 -8.75028 -8.39720 -8.30085 -7.87455 -6.23474 -4.24795 0.84770 1.44622 2.44499 2.76630 3.12613 3.21669 3.22603 3.62728 3.69033 3.97093 4.23184 4.43319 4.51745 4.66370 4.75606 5.01121 5.02457 5.06799 5.09534 5.11189 5.17975 5.21905 5.32700 5.38274 5.42188 5.46560 5.52713 5.53842 5.59609 5.60051 5.70165 5.74400 5.75204 5.82220 5.83308 5.92789 5.98559 6.06951 6.07677 6.10492 6.32171 6.37669 6.44291 6.52055 6.57632 6.58938 6.63127 6.96917 6.98401 7.00685 7.22100 7.40040 7.71975 7.95612 8.34204 8.69211 8.83401 9.34972 10.89306 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010115 B = 0.002657 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.599376 B =10537.012503 C =12035.628519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.075 4.075 4 C -0.119 4.119 5 C -0.078 4.078 6 C 0.010 3.990 7 C -0.069 4.069 8 C -0.156 4.156 9 C 0.631 3.369 10 O -0.550 6.550 11 N -0.575 5.575 12 C 0.208 3.792 13 C -0.539 4.539 14 H 0.079 0.921 15 C 0.079 3.921 16 N -0.889 5.889 17 Si 0.866 3.134 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.264 1.264 21 C 0.123 3.877 22 C -0.131 4.131 23 C 0.059 3.941 24 N -0.548 5.548 25 C 0.021 3.979 26 C 0.025 3.975 27 C -0.088 4.088 28 C -0.123 4.123 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.025 0.975 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.023 0.977 51 H 0.128 0.872 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 -0.570 -5.979 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.075 4.075 4 C -0.137 4.137 5 C -0.096 4.096 6 C 0.010 3.990 7 C -0.072 4.072 8 C -0.159 4.159 9 C 0.420 3.580 10 O -0.432 6.432 11 N -0.303 5.303 12 C 0.087 3.913 13 C -0.577 4.577 14 H 0.097 0.903 15 C -0.125 4.125 16 N -0.527 5.527 17 Si 0.693 3.307 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.189 1.189 21 C 0.000 4.000 22 C -0.170 4.170 23 C -0.070 4.070 24 N -0.272 5.272 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.106 4.106 28 C -0.141 4.141 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.042 0.958 51 H 0.146 0.854 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.936 -0.499 -6.716 12.844 hybrid contribution -0.122 0.087 1.571 1.578 sum -11.059 -0.412 -5.145 12.204 Atomic orbital electron populations 1.21752 0.94698 1.01608 1.02370 1.20568 0.96171 0.92617 1.02967 1.20043 0.98098 0.96170 0.93163 1.20952 1.00495 0.94534 0.97750 1.21450 0.96047 0.94428 0.97667 1.16021 1.01242 0.87898 0.93882 1.19105 0.95979 0.91243 1.00872 1.20542 1.01654 0.93830 0.99858 1.14701 0.77788 0.81607 0.83927 1.90790 1.53038 1.68055 1.31282 1.47730 1.62937 1.12926 1.06750 1.19861 0.97489 0.93132 0.80782 1.21345 0.96986 1.32071 1.07322 0.90287 1.24829 0.96081 0.94663 0.96918 1.69891 1.28065 1.33013 1.21683 0.86999 0.84263 0.79382 0.80071 1.19728 1.20759 1.18860 1.21317 0.95598 0.79690 1.03433 1.21975 0.99000 0.92918 1.03128 1.22070 0.91795 0.92232 1.00873 1.61968 1.21652 1.06501 1.37091 1.22442 0.97287 1.02896 0.90122 1.22368 0.99935 0.89321 1.00701 1.21294 0.97695 0.94518 0.97068 1.20877 1.01082 0.94509 0.97600 0.92465 0.92445 0.92509 0.90962 0.90883 0.85568 0.84835 0.94474 0.95223 0.92356 0.89793 0.90196 0.90773 0.91752 0.94513 0.90509 0.95629 0.91733 0.90877 0.91360 0.91621 0.95793 0.85391 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.09 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.07 -0.86 5.14 -104.50 -0.54 -1.40 16 4 C -0.12 -1.56 9.68 -39.65 -0.38 -1.95 16 5 C -0.08 -1.25 9.77 -39.11 -0.38 -1.63 16 6 C 0.01 0.16 5.74 -106.78 -0.61 -0.45 16 7 C -0.07 -1.38 13.25 -38.83 -0.51 -1.90 16 8 C -0.16 -3.39 11.70 -38.83 -0.45 -3.84 16 9 C 0.63 14.08 7.53 -14.33 -0.11 13.98 16 10 O -0.55 -12.92 16.67 5.19 0.09 -12.84 16 11 N -0.58 -12.17 2.46 -177.92 -0.44 -12.61 16 12 C 0.21 4.74 4.04 -5.19 -0.02 4.72 16 13 C -0.54 -14.44 9.94 -34.44 -0.34 -14.79 16 14 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 15 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 16 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 17 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 21 C 0.12 2.18 5.41 -4.04 -0.02 2.16 16 22 C -0.13 -2.01 5.46 -26.73 -0.15 -2.15 16 23 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 24 N -0.55 -6.80 5.02 -251.25 -1.26 -8.06 16 25 C 0.02 0.23 9.32 60.07 0.56 0.79 16 26 C 0.03 0.25 9.57 60.07 0.57 0.83 16 27 C -0.09 -1.22 9.77 -39.11 -0.38 -1.60 16 28 C -0.12 -1.43 9.68 -39.65 -0.38 -1.81 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 36 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 37 H 0.03 0.68 6.32 -51.93 -0.33 0.35 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 39 H 0.08 1.46 8.07 -51.92 -0.42 1.04 16 40 H 0.08 1.42 7.42 -51.93 -0.39 1.03 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 0.99 6.55 -51.93 -0.34 0.64 16 43 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 44 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 45 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 47 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 48 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 49 H 0.06 0.58 8.12 -51.93 -0.42 0.15 16 50 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 51 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 52 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 434.82 15.07 6.55 6.55 Total: -1.00 -31.31 434.82 -10.97 -42.28 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.94 Total: 2.62 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.07 Total: -7.94 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.92 Total: -45.77 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Total LS contribution 6.55 Total: 6.55 kcal Total: -31.31 -10.97 -42.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292554790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.202 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds