Wall clock time and date at job start Wed Apr 1 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99881 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00232 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.47007 * 111.00102 * 46.36849 * 5 4 3 7 7 C 1.53101 * 109.25984 * 182.38977 * 6 5 4 8 8 O 1.43020 * 109.25624 * 303.15226 * 7 6 5 9 9 C 1.43011 * 113.74015 * 58.66851 * 8 7 6 10 10 C 1.53000 * 109.50663 * 181.39561 * 9 8 7 11 11 C 1.52999 * 109.50731 * 61.26372 * 9 8 7 12 12 C 1.47013 * 110.99567 * 169.99994 * 5 4 3 13 13 C 1.34773 * 119.99970 * 180.02562 * 2 1 3 14 14 O 1.21593 * 120.00080 * 180.02562 * 13 2 1 15 15 N 1.34775 * 120.00437 * 359.97438 * 13 2 1 16 16 C 1.46496 * 120.00426 * 180.02562 * 15 13 2 17 17 C 1.50702 * 109.47181 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00246 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99559 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99563 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00095 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99604 * 180.02562 * 20 19 17 23 23 N 1.31402 * 120.00225 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99589 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47109 * 59.99661 * 24 22 20 26 26 H 1.48497 * 109.46841 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46980 * 299.99580 * 24 22 20 28 28 H 1.08997 * 109.47514 * 90.00045 * 1 2 3 29 29 H 1.09003 * 109.46763 * 209.99449 * 1 2 3 30 30 H 1.08995 * 109.47081 * 329.99868 * 1 2 3 31 31 H 1.09000 * 109.47175 * 150.00363 * 3 2 1 32 32 H 1.09001 * 109.47297 * 29.99871 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 34 34 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 35 35 H 1.09001 * 109.50810 * 302.32445 * 6 5 4 36 36 H 1.09003 * 109.51180 * 62.45318 * 6 5 4 37 37 H 1.08998 * 109.50743 * 183.21404 * 7 6 5 38 38 H 1.08998 * 109.54038 * 63.10133 * 7 6 5 39 39 H 1.08999 * 109.47338 * 179.78228 * 10 9 8 40 40 H 1.08999 * 109.47024 * 299.78323 * 10 9 8 41 41 H 1.09001 * 109.47014 * 59.78223 * 10 9 8 42 42 H 1.08995 * 109.47281 * 300.21536 * 11 9 8 43 43 H 1.08994 * 109.46980 * 60.21715 * 11 9 8 44 44 H 1.09000 * 109.47230 * 180.21516 * 11 9 8 45 45 H 1.09002 * 109.51035 * 297.54078 * 12 5 4 46 46 H 1.09003 * 109.50879 * 57.63070 * 12 5 4 47 47 H 0.97006 * 119.99620 * 0.02562 * 15 13 2 48 48 H 1.09004 * 109.46760 * 299.99930 * 16 15 13 49 49 H 1.08997 * 109.47121 * 59.99615 * 16 15 13 50 50 H 0.96993 * 120.00321 * 0.02562 * 19 17 16 51 51 H 0.97003 * 120.00071 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1864 2.9830 -1.4425 6 6 4.3100 2.9431 -0.4953 7 6 5.0090 4.3051 -0.4834 8 8 5.4310 4.6303 -1.8107 9 6 4.3618 4.6785 -2.7592 10 6 4.9232 4.9984 -4.1461 11 6 3.3632 5.7625 -2.3488 12 6 3.6562 3.3202 -2.7941 13 6 2.1389 -1.1672 -0.0005 14 8 3.3548 -1.1672 -0.0001 15 7 1.4651 -2.3344 -0.0005 16 6 2.1976 -3.6031 -0.0005 17 6 1.2183 -4.7486 -0.0012 18 8 0.0258 -4.5270 -0.0011 19 7 1.6677 -6.0192 -0.0018 20 6 0.7767 -7.0613 -0.0018 21 1 -0.2851 -6.8640 -0.0009 22 6 1.2400 -8.3713 -0.0020 23 7 2.5319 -8.6114 -0.0025 24 14 0.0261 -9.7912 -0.0027 25 1 -0.8273 -9.7122 -1.2155 26 1 0.7686 -11.0772 -0.0034 27 1 -0.8281 -9.7129 1.2095 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 3.1500 1.1384 0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.0414 0.9508 -1.9564 34 1 1.5000 1.8408 -1.9563 35 1 3.9363 2.7170 0.5034 36 1 5.0179 2.1733 -0.8026 37 1 5.8771 4.2630 0.1745 38 1 4.3170 5.0669 -0.1246 39 1 4.1083 5.0311 -4.8692 40 1 5.4254 5.9655 -4.1205 41 1 5.6358 4.2264 -4.4365 42 1 2.9654 5.5346 -1.3599 43 1 3.8661 6.7292 -2.3241 44 1 2.5466 5.7962 -3.0699 45 1 4.3537 2.5565 -3.1381 46 1 2.8053 3.3687 -3.4737 47 1 0.4950 -2.3344 -0.0005 48 1 2.8242 -3.6608 -0.8906 49 1 2.8243 -3.6608 0.8894 50 1 2.6213 -6.1964 -0.0015 51 1 2.8553 -9.5259 -0.0030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358286466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:39 Heat of formation + Delta-G solvation = -94.280288 kcal Electronic energy + Delta-G solvation = -30306.209050 eV Core-core repulsion = 26048.306669 eV Total energy + Delta-G solvation = -4257.902381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.54013 -39.99626 -38.29398 -36.80039 -35.17328 -34.48302 -33.94796 -33.67983 -31.39934 -30.29158 -29.12154 -27.64997 -27.60088 -26.60650 -25.05565 -24.31492 -23.71519 -21.48190 -19.76866 -19.67416 -19.53609 -18.33514 -17.82108 -16.92863 -16.72860 -16.11883 -15.73872 -15.67153 -15.41288 -15.22392 -15.06579 -14.66751 -14.57314 -14.27260 -14.10224 -13.83253 -13.51354 -13.44414 -13.21852 -13.05910 -12.75284 -12.57292 -12.55917 -12.38270 -12.20221 -12.08658 -11.99212 -11.90774 -11.64058 -11.57478 -11.38746 -11.12051 -11.07805 -10.59318 -10.51896 -10.32756 -10.02733 -9.87222 -9.63933 -8.97350 -8.66454 -8.64316 -8.52482 -8.11337 -6.52370 -3.94594 2.60987 3.12626 3.20635 3.24231 3.30247 3.40137 3.57837 3.73617 4.01944 4.17345 4.38069 4.55318 4.60941 4.70349 4.79114 4.85994 4.89064 4.96443 4.99857 5.07821 5.16160 5.20160 5.27583 5.28886 5.30376 5.35744 5.36784 5.48025 5.53102 5.57884 5.60502 5.64329 5.71712 5.77279 5.82365 5.89471 5.98714 5.99649 6.06412 6.34297 6.62306 6.68405 6.72881 6.93607 6.96647 7.44668 7.90929 8.11083 8.43870 8.72879 9.03294 9.38155 9.85975 10.64385 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.026255 B = 0.001726 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.209824 B =16222.446386 C =16530.157199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.635 5.635 3 C 0.134 3.866 4 C 0.038 3.962 5 N -0.530 5.530 6 C 0.009 3.991 7 C 0.062 3.938 8 O -0.377 6.377 9 C 0.114 3.886 10 C -0.139 4.139 11 C -0.167 4.167 12 C 0.031 3.969 13 C 0.705 3.295 14 O -0.596 6.596 15 N -0.723 5.723 16 C 0.127 3.873 17 C 0.428 3.572 18 O -0.599 6.599 19 N -0.548 5.548 20 C -0.306 4.306 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.894 5.894 24 Si 0.934 3.066 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.084 0.916 47 H 0.407 0.593 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.396 0.604 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 27.074 -3.242 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.373 5.373 3 C 0.010 3.990 4 C -0.091 4.091 5 N -0.255 5.255 6 C -0.119 4.119 7 C -0.015 4.015 8 O -0.297 6.297 9 C 0.074 3.926 10 C -0.196 4.196 11 C -0.224 4.224 12 C -0.097 4.097 13 C 0.406 3.594 14 O -0.474 6.474 15 N -0.382 5.382 16 C -0.001 4.001 17 C 0.214 3.786 18 O -0.486 6.486 19 N -0.183 5.183 20 C -0.435 4.435 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.534 5.534 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.247 0.753 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.230 0.770 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.012 27.366 -3.131 27.618 hybrid contribution -0.229 -1.719 -0.228 1.749 sum 1.783 25.647 -3.360 25.928 Atomic orbital electron populations 1.21778 0.79478 1.03296 1.01971 1.46904 1.06491 1.04714 1.79157 1.21390 0.98029 0.83667 0.95921 1.22555 0.98724 0.89456 0.98321 1.62304 1.24328 1.31775 1.07084 1.22925 0.92825 0.98161 0.98021 1.22680 0.99468 0.94886 0.84420 1.88029 1.32870 1.90754 1.18015 1.21547 0.87307 0.93719 0.90007 1.21750 1.01604 1.02674 0.93603 1.22265 0.99002 0.97987 1.03179 1.22775 0.99402 0.96849 0.90681 1.15806 0.85200 0.80361 0.77992 1.90897 1.11520 1.86397 1.58626 1.44944 1.11058 1.03655 1.78514 1.20795 0.94026 0.82194 1.03118 1.19746 0.89121 0.84155 0.85575 1.90482 1.16512 1.84113 1.57461 1.41781 1.10009 1.03924 1.62583 1.19679 0.91394 0.84037 1.48433 0.87726 1.25328 0.96698 0.98911 0.96765 1.69604 1.12556 1.22099 1.49165 0.85867 0.79610 0.79307 0.79138 1.19792 1.20846 1.19776 0.92629 0.90853 0.90801 0.89527 0.89887 0.93864 0.90418 0.89047 0.93367 0.88500 0.92067 0.90962 0.91515 0.91846 0.90932 0.92445 0.91789 0.93798 0.89768 0.75323 0.90072 0.90016 0.77008 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.25 59.85 0.61 1.35 16 2 N -0.63 -7.88 2.87 -187.34 -0.54 -8.42 16 3 C 0.13 1.40 4.72 -4.04 -0.02 1.38 16 4 C 0.04 0.40 5.60 -3.82 -0.02 0.37 16 5 N -0.53 -4.92 4.24 -234.30 -0.99 -5.91 16 6 C 0.01 0.08 4.94 -3.71 -0.02 0.06 16 7 C 0.06 0.52 6.61 37.21 0.25 0.76 16 8 O -0.38 -3.83 10.28 -35.23 -0.36 -4.19 16 9 C 0.11 0.95 1.11 -90.57 -0.10 0.85 16 10 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 11 C -0.17 -1.20 8.17 37.16 0.30 -0.89 16 12 C 0.03 0.28 4.32 -3.71 -0.02 0.27 16 13 C 0.71 11.66 8.28 -86.92 -0.72 10.94 16 14 O -0.60 -11.62 15.92 5.28 0.08 -11.54 16 15 N -0.72 -12.40 5.39 -66.42 -0.36 -12.76 16 16 C 0.13 2.39 6.15 -5.19 -0.03 2.36 16 17 C 0.43 9.84 7.85 -10.98 -0.09 9.76 16 18 O -0.60 -15.24 15.24 5.55 0.08 -15.15 16 19 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 20 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 23 N -0.89 -23.84 13.05 55.50 0.72 -23.12 16 24 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 30 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 31 H 0.09 1.04 5.56 -51.93 -0.29 0.75 16 32 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 33 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.76 6.05 -51.93 -0.31 0.45 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.46 6.49 -51.93 -0.34 0.12 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.57 6.12 -51.93 -0.32 0.25 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.41 6.80 5.17 -40.82 -0.21 6.59 16 48 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 49 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 50 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 51 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 404.03 15.07 6.09 6.09 Total: -1.00 -32.17 404.03 -8.48 -40.65 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -8.37 Total: 13.83 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 0.24 Total: 18.73 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -1.22 Total: -63.87 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.19 Total: -30.88 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.17 -8.48 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.627 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds