Wall clock time and date at job start Wed Apr 1 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53118 * 109.52788 * 2 1 4 4 C 1.53034 * 109.28214 * 182.37761 * 3 2 1 5 5 N 1.46848 * 109.51992 * 59.17854 * 4 3 2 6 6 C 1.46903 * 110.99762 * 174.16202 * 5 4 3 7 7 C 1.52997 * 109.47333 * 176.15413 * 6 5 4 8 8 H 1.09008 * 109.46953 * 298.77830 * 7 6 5 9 9 O 1.42899 * 109.47026 * 58.77610 * 7 6 5 10 10 C 1.52997 * 109.47196 * 178.78090 * 7 6 5 11 11 N 1.46507 * 109.47081 * 179.97438 * 10 7 6 12 12 C 1.34773 * 120.00145 * 179.97438 * 11 10 7 13 13 O 1.21588 * 119.99701 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00263 * 179.72535 * 12 11 10 15 15 C 1.46498 * 120.00133 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47019 * 180.02562 * 15 14 12 17 17 O 1.21294 * 120.00199 * 359.97438 * 16 15 14 18 18 N 1.34783 * 120.00248 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00219 * 180.02562 * 18 16 15 20 20 H 1.07993 * 119.99858 * 359.97438 * 19 18 16 21 21 C 1.38943 * 119.99650 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00391 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99923 * 179.97438 * 21 19 18 24 24 H 1.48511 * 109.46890 * 59.99748 * 23 21 19 25 25 H 1.48499 * 109.47416 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46840 * 300.00267 * 23 21 19 27 27 C 1.46842 * 111.20022 * 298.25404 * 5 4 3 28 28 C 1.53039 * 109.52036 * 61.74925 * 27 5 4 29 29 H 1.09001 * 109.47269 * 59.99912 * 1 2 3 30 30 H 1.08994 * 109.47896 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47107 * 300.00192 * 1 2 3 32 32 H 1.09003 * 109.52310 * 120.12877 * 2 1 3 33 33 H 1.09003 * 109.50049 * 62.43534 * 3 2 1 34 34 H 1.09001 * 109.49993 * 302.31899 * 3 2 1 35 35 H 1.09001 * 109.45932 * 299.16486 * 4 3 2 36 36 H 1.08994 * 109.45643 * 179.18992 * 4 3 2 37 37 H 1.09005 * 109.47247 * 56.15324 * 6 5 4 38 38 H 1.08999 * 109.47490 * 296.15636 * 6 5 4 39 39 H 0.96703 * 113.99890 * 60.00774 * 9 7 6 40 40 H 1.08996 * 109.47340 * 59.99732 * 10 7 6 41 41 H 1.08994 * 109.47099 * 299.99556 * 10 7 6 42 42 H 0.97002 * 119.99797 * 0.02562 * 11 10 7 43 43 H 0.97006 * 119.99711 * 0.02562 * 14 12 11 44 44 H 1.09001 * 109.47195 * 299.99896 * 15 14 12 45 45 H 1.08996 * 109.47553 * 60.00326 * 15 14 12 46 46 H 0.96996 * 119.99587 * 359.97438 * 18 16 15 47 47 H 0.97006 * 119.99934 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.46421 * 181.75567 * 27 5 4 49 49 H 1.09000 * 109.47020 * 301.73221 * 27 5 4 50 50 H 1.09006 * 109.50787 * 180.87928 * 28 27 5 51 51 H 1.08997 * 109.50586 * 60.75563 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0418 1.4431 0.0000 4 6 3.5709 1.4370 -0.0599 5 7 4.0115 0.7424 -1.2764 6 6 5.4685 0.8372 -1.4383 7 6 5.9000 0.0236 -2.6601 8 1 5.6364 -1.0236 -2.5108 9 8 5.2347 0.5211 -3.8227 10 6 7.4135 0.1470 -2.8464 11 7 7.8267 -0.6326 -4.0160 12 6 9.1250 -0.6714 -4.3756 13 8 9.9534 -0.0597 -3.7291 14 7 9.5059 -1.3930 -5.4482 15 6 10.9172 -1.4355 -5.8388 16 6 11.0744 -2.3042 -7.0602 17 8 10.1032 -2.8359 -7.5554 18 7 12.2943 -2.4904 -7.6023 19 6 12.4372 -3.2803 -8.7137 20 1 11.5725 -3.7536 -9.1546 21 6 13.6949 -3.4726 -9.2722 22 7 14.7473 -2.8969 -8.7354 23 14 13.8898 -4.5494 -10.7862 24 1 13.0845 -3.9874 -11.9003 25 1 15.3203 -4.5920 -11.1825 26 1 13.4193 -5.9241 -10.4797 27 6 3.5721 -0.6588 -1.2766 28 6 2.0430 -0.7152 -1.2531 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8942 -0.5157 0.8886 33 1 1.7153 1.9450 0.9109 34 1 1.6457 1.9697 -0.8683 35 1 3.9666 0.9223 0.8157 36 1 3.9378 2.4632 -0.0746 37 1 5.9593 0.4438 -0.5480 38 1 5.7515 1.8804 -1.5781 39 1 5.4235 1.4494 -4.0170 40 1 7.9209 -0.2325 -1.9595 41 1 7.6770 1.1940 -2.9957 42 1 7.1658 -1.1203 -4.5320 43 1 8.8455 -1.8842 -5.9617 44 1 11.2624 -0.4265 -6.0642 45 1 11.5083 -1.8476 -5.0210 46 1 13.0709 -2.0649 -7.2065 47 1 15.6252 -3.0309 -9.1256 48 1 3.9399 -1.1547 -2.1749 49 1 3.9678 -1.1637 -0.3953 50 1 1.7173 -1.7553 -1.2374 51 1 1.6469 -0.2225 -2.1410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358286864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:09 Heat of formation + Delta-G solvation = -127.154745 kcal Electronic energy + Delta-G solvation = -29309.549662 eV Core-core repulsion = 25050.221738 eV Total energy + Delta-G solvation = -4259.327924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 6.04 seconds Orbital eigenvalues (eV) -40.14248 -39.64204 -38.28694 -37.67383 -34.83344 -34.45536 -34.17200 -33.61894 -31.38025 -31.32753 -30.62198 -28.52595 -27.23575 -25.08185 -24.18837 -23.84096 -22.45948 -21.43962 -20.60544 -20.05299 -19.56629 -18.41320 -18.00197 -17.24648 -16.55753 -16.01487 -15.77998 -15.61209 -15.43002 -15.17522 -14.90823 -14.76059 -14.58274 -14.44428 -14.25091 -14.08418 -13.89114 -13.61875 -13.43999 -13.11830 -12.88933 -12.77127 -12.42842 -12.17293 -12.15946 -12.03382 -11.84339 -11.61447 -11.59691 -11.33578 -11.09144 -11.07482 -10.71858 -10.56725 -10.49586 -10.33753 -10.29919 -10.02193 -9.61046 -9.18464 -8.69559 -8.60692 -8.58877 -8.08276 -6.49749 -3.91826 2.74008 3.14993 3.22630 3.26550 3.39859 3.41777 3.77015 4.08106 4.14149 4.21487 4.35354 4.37632 4.39322 4.48196 4.65878 4.68807 4.84476 4.92113 4.94489 4.99299 5.03297 5.13740 5.18858 5.21802 5.23886 5.28407 5.30977 5.43303 5.46890 5.51272 5.63240 5.71000 5.73052 5.76776 5.78581 5.92831 6.02156 6.03664 6.10008 6.44942 6.64269 6.68954 6.76971 7.10799 7.37287 7.47351 7.93913 8.25097 8.47089 8.80014 9.06246 9.41214 9.89313 10.67052 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.001455 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.014819 B =19238.839900 C =19881.174723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.111 4.111 4 C 0.054 3.946 5 N -0.525 5.525 6 C 0.025 3.975 7 C 0.096 3.904 8 H 0.106 0.894 9 O -0.544 6.544 10 C 0.110 3.890 11 N -0.743 5.743 12 C 0.705 3.295 13 O -0.601 6.601 14 N -0.724 5.724 15 C 0.129 3.871 16 C 0.428 3.572 17 O -0.597 6.597 18 N -0.549 5.549 19 C -0.306 4.306 20 H 0.105 0.895 21 C 0.026 3.974 22 N -0.895 5.895 23 Si 0.934 3.066 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 C 0.049 3.951 28 C -0.110 4.110 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.377 0.623 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.401 0.599 43 H 0.407 0.593 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.274 0.726 48 H 0.084 0.916 49 H 0.029 0.971 50 H 0.065 0.935 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.743 8.725 19.105 31.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.148 4.148 4 C -0.073 4.073 5 N -0.250 5.250 6 C -0.103 4.103 7 C 0.036 3.964 8 H 0.123 0.877 9 O -0.349 6.349 10 C -0.016 4.016 11 N -0.400 5.400 12 C 0.404 3.596 13 O -0.480 6.480 14 N -0.381 5.381 15 C 0.000 4.000 16 C 0.214 3.786 17 O -0.484 6.484 18 N -0.184 5.184 19 C -0.435 4.435 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 C -0.079 4.079 28 C -0.148 4.148 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.225 0.775 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.236 0.764 43 H 0.245 0.755 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.048 0.952 50 H 0.084 0.916 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.823 8.543 18.874 31.571 hybrid contribution 0.809 -0.526 -0.123 0.973 sum -23.013 8.017 18.751 30.749 Atomic orbital electron populations 1.21805 0.95063 1.01699 1.01782 1.21200 0.95705 0.96208 0.98294 1.21637 0.94424 0.96593 1.02185 1.22104 0.96051 0.98902 0.90281 1.61875 1.11150 1.14516 1.37463 1.22726 0.88460 1.01505 0.97651 1.22224 0.89647 0.99078 0.85445 0.87657 1.86595 1.71813 1.31752 1.44713 1.21769 0.94307 0.96668 0.88823 1.44846 1.07251 1.55421 1.32520 1.15843 0.82472 0.80190 0.81091 1.90902 1.51232 1.49858 1.56021 1.44762 1.10065 1.52801 1.30460 1.20777 0.81589 1.00701 0.96889 1.19773 0.84642 0.86925 0.87264 1.90493 1.38588 1.54285 1.65043 1.41777 1.07022 1.43248 1.26341 1.19683 0.94899 1.24879 1.04066 0.87739 1.25314 0.94832 0.97986 0.99519 1.69610 0.99455 1.43303 1.41141 0.85875 0.77162 0.80053 0.80877 1.19789 1.20862 1.19801 1.22213 0.96067 0.88657 1.00928 1.21630 0.94532 1.00275 0.98362 0.92511 0.92735 0.92839 0.91743 0.91675 0.90938 0.95056 0.90761 0.93679 0.89822 0.77500 0.90985 0.91291 0.76415 0.75527 0.90047 0.90050 0.77021 0.91558 0.89768 0.95243 0.91636 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.20 37.15 0.34 -0.40 16 2 C -0.10 -0.55 2.79 -90.50 -0.25 -0.80 16 3 C -0.11 -0.63 5.38 -26.65 -0.14 -0.77 16 4 C 0.05 0.34 5.46 -3.83 -0.02 0.32 16 5 N -0.53 -3.69 4.61 -234.67 -1.08 -4.77 16 6 C 0.03 0.16 4.79 -3.82 -0.02 0.14 16 7 C 0.10 0.69 2.47 -26.73 -0.07 0.63 16 8 H 0.11 0.79 6.27 -51.92 -0.33 0.46 16 9 O -0.54 -4.47 12.93 -35.23 -0.46 -4.92 16 10 C 0.11 1.04 5.34 -4.04 -0.02 1.02 16 11 N -0.74 -8.84 5.45 -65.23 -0.36 -9.19 16 12 C 0.70 11.49 8.57 -86.93 -0.74 10.75 16 13 O -0.60 -11.75 16.34 5.29 0.09 -11.66 16 14 N -0.72 -12.35 5.53 -66.42 -0.37 -12.72 16 15 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 16 C 0.43 9.91 7.85 -10.98 -0.09 9.83 16 17 O -0.60 -15.39 15.24 5.54 0.08 -15.30 16 18 N -0.55 -13.69 5.29 -10.97 -0.06 -13.75 16 19 C -0.31 -8.35 9.68 -14.94 -0.14 -8.50 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 22 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 23 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 27 C 0.05 0.34 5.04 -3.84 -0.02 0.33 16 28 C -0.11 -0.71 5.38 -26.65 -0.14 -0.86 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.38 2.27 9.05 45.56 0.41 2.68 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.40 4.20 8.36 -40.82 -0.34 3.86 16 43 H 0.41 6.80 7.45 -40.82 -0.30 6.50 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.08 0.64 5.87 -51.93 -0.30 0.34 16 49 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 411.66 15.07 6.20 6.20 Total: -1.00 -32.50 411.66 -9.57 -42.07 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -7.88 Total: 17.02 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: -1.45 Total: 14.67 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -1.14 Total: -63.66 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.28 Total: -31.89 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.50 -9.57 -42.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.080 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.04 seconds