Wall clock time and date at job start Wed Apr 1 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 115.55794 * 2 1 4 4 C 1.38243 * 119.99676 * 145.41531 * 3 2 1 5 5 C 1.38237 * 119.99819 * 179.78531 * 4 3 2 6 6 C 1.38235 * 120.00090 * 0.46430 * 5 4 3 7 7 C 1.38235 * 119.99739 * 359.76746 * 6 5 4 8 8 C 1.38228 * 120.00624 * 325.68412 * 3 2 1 9 9 C 1.52988 * 117.49780 * 214.30976 * 2 1 3 10 10 C 1.52993 * 117.49702 * 145.68696 * 2 1 3 11 11 H 1.09002 * 117.51803 * 214.97293 * 10 2 1 12 12 C 1.50705 * 117.50103 * 359.97438 * 10 2 1 13 13 O 1.21278 * 119.99672 * 0.02562 * 12 10 2 14 14 N 1.34779 * 120.00015 * 180.02562 * 12 10 2 15 15 C 1.46499 * 120.00024 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.47065 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.50153 * 54.93547 * 16 15 14 18 18 C 1.53042 * 109.49801 * 175.00009 * 16 15 14 19 19 C 1.53040 * 109.54174 * 181.34915 * 18 16 15 20 20 C 1.53188 * 109.30921 * 298.63667 * 19 18 16 21 21 N 1.46926 * 108.77817 * 54.63345 * 20 19 18 22 22 C 1.36932 * 120.62923 * 126.37040 * 21 20 19 23 23 H 1.08003 * 120.00058 * 207.50814 * 22 21 20 24 24 C 1.38813 * 120.00216 * 27.51552 * 22 21 20 25 25 N 1.31614 * 120.00042 * 17.83429 * 24 22 21 26 26 Si 1.86803 * 119.99907 * 197.83738 * 24 22 21 27 27 H 1.48501 * 109.47098 * 265.35618 * 26 24 22 28 28 H 1.48493 * 109.47161 * 145.35673 * 26 24 22 29 29 H 1.48505 * 109.47060 * 25.35372 * 26 24 22 30 30 C 1.46930 * 118.73807 * 306.63893 * 21 20 19 31 31 H 1.09004 * 109.46742 * 274.31190 * 1 2 3 32 32 H 1.08998 * 109.46972 * 34.30814 * 1 2 3 33 33 H 1.08994 * 109.46975 * 154.31083 * 1 2 3 34 34 H 1.08003 * 119.99852 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.99814 * 180.25581 * 5 4 3 36 36 H 1.07994 * 119.99936 * 179.78887 * 6 5 4 37 37 H 1.07997 * 119.99948 * 179.97438 * 7 6 5 38 38 H 1.08007 * 119.99536 * 359.97438 * 8 3 2 39 39 H 1.09000 * 117.49987 * 145.02141 * 9 2 1 40 40 H 1.09005 * 117.50397 * 0.02562 * 9 2 1 41 41 H 0.97002 * 119.99832 * 0.02562 * 14 12 10 42 42 H 1.08991 * 109.47076 * 60.00325 * 15 14 12 43 43 H 1.09004 * 109.46567 * 300.00461 * 15 14 12 44 44 H 1.09004 * 109.45919 * 61.32507 * 18 16 15 45 45 H 1.09004 * 109.46121 * 301.37112 * 18 16 15 46 46 H 1.09002 * 109.49979 * 178.68243 * 19 18 16 47 47 H 1.09001 * 109.52242 * 58.59834 * 19 18 16 48 48 H 1.09003 * 109.58681 * 294.84505 * 20 19 18 49 49 H 1.09001 * 109.70413 * 174.49134 * 20 19 18 50 50 H 0.97004 * 120.00090 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.58323 * 173.14513 * 30 21 20 52 52 H 1.08997 * 109.58717 * 293.57457 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 3.3676 1.5578 0.6796 5 6 3.9663 2.8038 0.6759 6 6 3.3727 3.8539 0.0007 7 6 2.1829 3.6567 -0.6748 8 6 1.5865 2.4097 -0.6748 9 6 2.2364 -1.1209 -0.7649 10 6 2.2364 -1.1209 0.7650 11 1 3.1716 -0.8755 1.2683 12 6 1.3720 -2.1402 1.4614 13 8 0.1638 -2.0528 1.4017 14 7 1.9415 -3.1489 2.1505 15 6 1.1012 -4.1400 2.8269 16 6 1.9902 -5.1677 3.5299 17 1 2.6815 -4.6543 4.1983 18 6 1.1174 -6.1300 4.3389 19 6 2.0078 -7.1378 5.0694 20 6 2.8003 -7.9517 4.0417 21 7 3.5304 -7.0250 3.1659 22 6 4.8822 -7.1520 2.9881 23 1 5.4783 -6.2855 2.7427 24 6 5.4864 -8.3944 3.1230 25 7 4.7581 -9.4895 3.0706 26 14 7.3330 -8.5122 3.3789 27 1 8.0024 -8.7151 2.0689 28 1 7.6368 -9.6584 4.2728 29 1 7.8279 -7.2565 3.9984 30 6 2.7835 -5.9559 2.4892 31 1 -0.3633 0.0773 1.0248 32 1 -0.3633 0.8489 -0.5792 33 1 -0.3633 -0.9260 -0.4455 34 1 3.8295 0.7382 1.2101 35 1 4.8961 2.9576 1.2034 36 1 3.8387 4.8281 0.0007 37 1 1.7190 4.4772 -1.2020 38 1 0.6568 2.2557 -1.2025 39 1 3.1715 -0.8751 -1.2682 40 1 1.6112 -1.8582 -1.2686 41 1 2.9079 -3.2185 2.1984 42 1 0.4723 -4.6445 2.0934 43 1 0.4715 -3.6405 3.5633 44 1 0.4434 -6.6612 3.6668 45 1 0.5340 -5.5663 5.0669 46 1 1.3869 -7.8081 5.6638 47 1 2.6988 -6.6062 5.7235 48 1 2.1149 -8.5543 3.4457 49 1 3.5076 -8.6030 4.5552 50 1 5.1803 -10.3577 3.1652 51 1 3.4798 -5.2892 1.9806 52 1 2.0967 -6.3925 1.7641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562525136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:02 Heat of formation + Delta-G solvation = 24.475984 kcal Electronic energy + Delta-G solvation = -29423.051385 eV Core-core repulsion = 25581.147926 eV Total energy + Delta-G solvation = -3841.903459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.69963 -39.29776 -37.98487 -36.73410 -34.76275 -33.02079 -31.46973 -30.92391 -30.48454 -30.34642 -28.50224 -26.04486 -25.30334 -23.72633 -23.35330 -22.62751 -22.08854 -20.95500 -20.36923 -19.56977 -18.94157 -17.69493 -16.89026 -16.50811 -15.83970 -15.45695 -15.16030 -14.98490 -14.87592 -14.54698 -14.22335 -13.90458 -13.79067 -13.65595 -13.43841 -13.35485 -13.04275 -12.80379 -12.51814 -12.43067 -12.38124 -12.20842 -12.16944 -12.01885 -11.39187 -11.31052 -11.19163 -11.04662 -10.72370 -10.54673 -10.48458 -10.31277 -10.25598 -10.19793 -9.95325 -9.73028 -9.50330 -9.44509 -9.18660 -8.90309 -8.79322 -8.48908 -6.70782 -5.81964 -3.23738 1.04951 1.13725 2.52047 3.16569 3.34320 3.40958 3.42023 3.43750 3.80611 4.30711 4.38742 4.45577 4.58437 4.64784 4.73811 4.81893 4.89721 5.01892 5.09764 5.19424 5.27927 5.28997 5.42403 5.44562 5.46901 5.60057 5.62491 5.66053 5.71514 5.77895 5.81357 5.86367 5.94454 5.94784 5.99274 6.18349 6.21580 6.25386 6.30789 6.33727 6.36295 6.40329 6.54739 6.57241 6.68588 6.72933 6.75786 6.83816 6.94366 7.37386 7.61400 7.64986 7.75743 8.31241 8.41239 9.17793 9.81735 10.38342 11.26496 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.002239 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.904664 B =12502.653440 C =13846.640379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.057 4.057 3 C -0.042 4.042 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.127 4.127 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.133 4.133 10 C -0.184 4.184 11 H 0.125 0.875 12 C 0.541 3.459 13 O -0.541 6.541 14 N -0.719 5.719 15 C 0.128 3.872 16 C -0.117 4.117 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.168 3.832 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.065 0.935 24 C 0.002 3.998 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.289 1.289 29 H -0.279 1.279 30 C 0.154 3.846 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.403 0.597 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.017 0.983 49 H 0.087 0.913 50 H 0.254 0.746 51 H 0.050 0.950 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 22.492 -4.987 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.058 4.058 3 C -0.042 4.042 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.145 4.145 7 C -0.137 4.137 8 C -0.129 4.129 9 C -0.171 4.171 10 C -0.205 4.205 11 H 0.143 0.857 12 C 0.328 3.672 13 O -0.418 6.418 14 N -0.370 5.370 15 C 0.005 3.995 16 C -0.138 4.138 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.314 5.314 22 C -0.383 4.383 23 H 0.082 0.918 24 C -0.197 4.197 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.215 1.215 29 H -0.204 1.204 30 C 0.028 3.972 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.238 0.762 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.035 0.965 49 H 0.105 0.895 50 H 0.064 0.936 51 H 0.068 0.932 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.561 22.336 -5.008 23.812 hybrid contribution 1.607 -0.256 0.290 1.653 sum -4.954 22.080 -4.718 23.115 Atomic orbital electron populations 1.21373 0.89825 1.01609 1.02919 1.20179 0.95727 0.87029 1.02835 1.19062 0.94614 0.93200 0.97324 1.21112 0.95535 0.97611 0.99528 1.21143 0.99922 0.92984 0.99395 1.21160 0.96105 0.98982 0.98230 1.21139 0.95905 0.97049 0.99561 1.21011 1.00134 0.92384 0.99405 1.23202 1.02838 1.00017 0.91018 1.22447 1.01891 1.00066 0.96051 0.85746 1.19532 0.88018 0.81232 0.78467 1.90685 1.14475 1.75034 1.61649 1.46042 1.10917 1.27322 1.52737 1.21450 0.93241 0.88890 0.95957 1.21871 0.97436 0.95542 0.98950 0.90933 1.21342 0.97309 0.96929 0.98198 1.22167 0.98355 0.98245 0.99316 1.20802 0.94052 0.90816 0.90060 1.44032 1.04542 1.32427 1.50377 1.19143 0.82463 0.92553 1.44129 0.91776 1.25022 0.97798 0.95465 1.01372 1.70045 1.34569 0.96892 1.53003 0.86314 0.85568 0.77297 0.77788 1.21475 1.21547 1.20446 1.20802 0.93725 0.90716 0.91993 0.91176 0.93101 0.91197 0.85866 0.85993 0.86200 0.86049 0.85685 0.87639 0.87609 0.76211 0.91626 0.92030 0.92482 0.93451 0.93173 0.92761 0.96468 0.89528 0.93631 0.93168 0.96435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 7.97 37.16 0.30 -0.81 16 2 C -0.06 -0.59 2.55 -155.67 -0.40 -0.99 16 3 C -0.04 -0.41 5.45 -104.62 -0.57 -0.98 16 4 C -0.12 -1.11 9.39 -39.58 -0.37 -1.48 16 5 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 6 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 7 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 8 C -0.11 -0.99 9.27 -39.59 -0.37 -1.36 16 9 C -0.13 -1.29 9.58 -26.74 -0.26 -1.55 16 10 C -0.18 -1.95 5.53 -91.78 -0.51 -2.45 16 11 H 0.12 1.11 6.08 -51.93 -0.32 0.80 16 12 C 0.54 7.26 7.59 -10.98 -0.08 7.17 16 13 O -0.54 -8.70 13.10 5.56 0.07 -8.63 16 14 N -0.72 -9.38 5.33 -60.30 -0.32 -9.71 16 15 C 0.13 1.84 5.07 -4.04 -0.02 1.82 16 16 C -0.12 -1.89 2.36 -90.72 -0.21 -2.11 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 19 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 20 C 0.17 3.94 5.32 -3.71 -0.02 3.92 16 21 N -0.59 -14.36 3.00 -172.58 -0.52 -14.88 16 22 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 23 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 24 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 25 N -0.90 -25.84 11.20 55.49 0.62 -25.22 16 26 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 C 0.15 3.06 5.58 -3.93 -0.02 3.04 16 31 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 32 H 0.05 0.46 6.14 -51.93 -0.32 0.14 16 33 H 0.07 0.85 7.02 -51.93 -0.36 0.48 16 34 H 0.12 1.01 5.93 -52.48 -0.31 0.70 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.96 6.45 -52.48 -0.34 0.62 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.06 8.05 -51.93 -0.42 0.64 16 41 H 0.40 4.76 7.69 -40.82 -0.31 4.45 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.28 6.03 -51.93 -0.31 1.97 16 50 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.05 0.95 7.12 -51.93 -0.37 0.58 16 52 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 404.63 15.07 6.10 6.10 Total: -1.00 -30.81 404.63 -11.82 -42.62 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.49 Total: 4.81 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -4.25 Total: -11.34 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.22 Total: -49.80 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.07 Total: -8.63 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.81 -11.82 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562525136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.100 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds