Wall clock time and date at job start Wed Apr 1 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50704 * 115.54986 * 2 1 4 4 C 1.38234 * 120.00147 * 145.87997 * 3 2 1 5 5 C 1.38236 * 119.99877 * 180.25743 * 4 3 2 6 6 C 1.38232 * 120.00057 * 359.51037 * 5 4 3 7 7 C 1.38234 * 119.99987 * 0.27634 * 6 5 4 8 8 C 1.38231 * 119.99664 * 325.66669 * 3 2 1 9 9 C 1.52997 * 117.52029 * 214.29943 * 2 1 3 10 10 C 1.53005 * 60.00249 * 252.51699 * 9 2 1 11 11 H 1.08993 * 117.51861 * 252.51991 * 10 9 2 12 12 C 1.50693 * 117.49845 * 107.48652 * 10 9 2 13 13 O 1.21281 * 119.99970 * 291.38002 * 12 10 9 14 14 N 1.34777 * 120.00230 * 111.38103 * 12 10 9 15 15 C 1.46498 * 120.00321 * 179.97438 * 14 12 10 16 16 C 1.53004 * 109.47051 * 180.02562 * 15 14 12 17 17 C 1.53037 * 109.46010 * 295.07162 * 16 15 14 18 18 C 1.53188 * 109.31382 * 178.61502 * 17 16 15 19 19 N 1.46932 * 108.77462 * 54.62976 * 18 17 16 20 20 C 1.36941 * 120.62831 * 126.36993 * 19 18 17 21 21 H 1.08000 * 119.99917 * 207.70087 * 20 19 18 22 22 C 1.38810 * 120.00063 * 27.70039 * 20 19 18 23 23 N 1.31626 * 119.99765 * 17.35307 * 22 20 19 24 24 Si 1.86799 * 120.00102 * 197.34895 * 22 20 19 25 25 H 1.48496 * 109.47268 * 60.00250 * 24 22 20 26 26 H 1.48505 * 109.46954 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47232 * 300.00153 * 24 22 20 28 28 C 1.46920 * 118.74194 * 306.39436 * 19 18 17 29 29 C 1.53044 * 109.45779 * 175.00127 * 16 15 14 30 30 H 1.08998 * 109.47181 * 34.41854 * 1 2 3 31 31 H 1.09004 * 109.47041 * 154.41808 * 1 2 3 32 32 H 1.08999 * 109.47122 * 274.41301 * 1 2 3 33 33 H 1.08007 * 120.00128 * 0.04001 * 4 3 2 34 34 H 1.08000 * 120.00182 * 179.78587 * 5 4 3 35 35 H 1.08005 * 120.00243 * 180.25745 * 6 5 4 36 36 H 1.08001 * 120.00109 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.00435 * 0.02562 * 8 3 2 38 38 H 1.08995 * 117.49901 * 0.02562 * 9 2 1 39 39 H 1.09000 * 117.50158 * 145.02795 * 9 2 1 40 40 H 0.97000 * 119.99565 * 0.02562 * 14 12 10 41 41 H 1.08994 * 109.47076 * 299.99918 * 15 14 12 42 42 H 1.09001 * 109.46597 * 60.00170 * 15 14 12 43 43 H 1.09005 * 109.45859 * 55.02987 * 16 15 14 44 44 H 1.09009 * 109.49755 * 298.56384 * 17 16 15 45 45 H 1.09000 * 109.50286 * 58.66005 * 17 16 15 46 46 H 1.09000 * 109.58690 * 294.85056 * 18 17 16 47 47 H 1.08997 * 109.59053 * 174.41505 * 18 17 16 48 48 H 0.97005 * 119.99576 * 180.02562 * 23 22 20 49 49 H 1.08992 * 109.58735 * 293.81973 * 28 19 18 50 50 H 1.09003 * 109.58705 * 173.39284 * 28 19 18 51 51 H 1.08997 * 109.49796 * 301.33707 * 29 16 15 52 52 H 1.08999 * 109.49744 * 61.43619 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 6 3.3721 1.5558 0.6715 5 6 3.9656 2.8043 0.6759 6 6 3.3720 3.8542 0.0004 7 6 2.1820 3.6569 -0.6748 8 6 1.5860 2.4095 -0.6752 9 6 2.2368 -1.1209 -0.7646 10 6 2.2364 -1.1207 0.7654 11 1 3.1710 -0.8745 1.2693 12 6 1.3720 -2.1404 1.4611 13 8 0.1638 -2.0533 1.4011 14 7 1.9415 -3.1492 2.1500 15 6 1.1012 -4.1401 2.8268 16 6 1.9903 -5.1681 3.5295 17 6 2.7847 -5.9545 2.4842 18 6 3.6991 -6.9587 3.1928 19 7 2.8830 -7.7939 4.0847 20 6 2.9327 -9.1598 4.0005 21 1 2.0764 -9.7503 4.2912 22 6 4.0837 -9.7854 3.5414 23 7 5.2232 -9.1273 3.5116 24 14 4.0154 -11.5613 2.9662 25 1 3.0665 -11.6774 1.8298 26 1 5.3675 -11.9922 2.5286 27 1 3.5581 -12.4263 4.0833 28 6 2.0122 -7.1358 5.0681 29 6 1.1166 -6.1296 4.3384 30 1 -0.3633 0.8477 -0.5809 31 1 -0.3633 -0.9270 -0.4438 32 1 -0.3633 0.0791 1.0246 33 1 3.8382 0.7345 1.1956 34 1 4.8953 2.9585 1.2034 35 1 3.8377 4.8286 0.0004 36 1 1.7180 4.4772 -1.2022 37 1 0.6561 2.2556 -1.2024 38 1 1.6120 -1.8584 -1.2682 39 1 3.1720 -0.8750 -1.2677 40 1 2.9078 -3.2186 2.1983 41 1 0.4720 -3.6406 3.5633 42 1 0.4720 -4.6444 2.0934 43 1 2.6805 -4.6541 4.1987 44 1 2.0957 -6.4887 1.8299 45 1 3.3890 -5.2665 1.8930 46 1 4.4469 -6.4227 3.7773 47 1 4.1929 -7.5886 2.4530 48 1 6.0274 -9.5644 3.1905 49 1 2.6225 -6.6143 5.8054 50 1 1.3931 -7.8824 5.5655 51 1 0.5338 -5.5661 5.0670 52 1 0.4434 -6.6621 3.6666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569069727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:06 Heat of formation + Delta-G solvation = 24.918841 kcal Electronic energy + Delta-G solvation = -29227.409025 eV Core-core repulsion = 25385.524769 eV Total energy + Delta-G solvation = -3841.884255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.75194 -39.34476 -37.99423 -36.77360 -34.88669 -32.91162 -31.49535 -30.96114 -30.60437 -29.86020 -28.61200 -27.04967 -24.72551 -23.47581 -23.36198 -22.65777 -22.19770 -21.02812 -20.42167 -19.58292 -19.01909 -17.74948 -16.89241 -16.63044 -15.91558 -15.45394 -15.15234 -14.99830 -14.85830 -14.59131 -14.12990 -13.90097 -13.81862 -13.54642 -13.51762 -13.40207 -13.13324 -13.02515 -12.51272 -12.47940 -12.41537 -12.32627 -12.06214 -11.84910 -11.43418 -11.39808 -11.23283 -10.99343 -10.71759 -10.57708 -10.52842 -10.36369 -10.24772 -10.24116 -9.92783 -9.71700 -9.53588 -9.44390 -9.22394 -8.95048 -8.83457 -8.47239 -6.68227 -5.79953 -3.21602 1.01094 1.09951 2.46356 3.11132 3.36335 3.37749 3.43387 3.45041 3.75431 4.25766 4.33298 4.49134 4.53604 4.59506 4.69887 4.77370 4.85550 4.97080 5.10521 5.15925 5.24116 5.25432 5.35724 5.40405 5.42326 5.57484 5.57733 5.61719 5.66359 5.73802 5.82072 5.86992 5.90688 5.91949 6.05454 6.14401 6.14976 6.21712 6.27763 6.29708 6.35867 6.44560 6.54485 6.57525 6.66835 6.69124 6.75471 6.81236 6.97641 7.35009 7.55669 7.63280 7.78533 8.25667 8.44363 9.20773 9.84451 10.40940 11.28568 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.001890 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.627971 B =14814.473596 C =15235.760191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.057 4.057 3 C -0.042 4.042 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.126 4.126 7 C -0.118 4.118 8 C -0.111 4.111 9 C -0.134 4.134 10 C -0.184 4.184 11 H 0.125 0.875 12 C 0.540 3.460 13 O -0.539 6.539 14 N -0.720 5.720 15 C 0.125 3.875 16 C -0.090 4.090 17 C -0.135 4.135 18 C 0.171 3.829 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.904 5.904 24 Si 0.902 3.098 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.146 3.854 29 C -0.125 4.125 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.402 0.598 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.087 0.913 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.054 0.946 51 H 0.052 0.948 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 24.505 -7.905 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.057 4.057 3 C -0.042 4.042 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.144 4.144 7 C -0.136 4.136 8 C -0.129 4.129 9 C -0.171 4.171 10 C -0.205 4.205 11 H 0.143 0.857 12 C 0.327 3.673 13 O -0.417 6.417 14 N -0.371 5.371 15 C 0.002 3.998 16 C -0.109 4.109 17 C -0.174 4.174 18 C 0.045 3.955 19 N -0.315 5.315 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.732 3.268 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.019 3.981 29 C -0.164 4.164 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.236 0.764 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.934 24.455 -7.967 26.189 hybrid contribution 0.737 -0.961 -0.152 1.221 sum -4.197 23.495 -8.120 25.210 Atomic orbital electron populations 1.21373 0.89803 1.01637 1.02945 1.20184 0.95751 0.87044 1.02731 1.19055 0.94569 0.93190 0.97407 1.21100 0.95508 0.97581 0.99626 1.21141 0.99973 0.92943 0.99366 1.21165 0.96092 0.99017 0.98168 1.21147 0.95888 0.97041 0.99548 1.21016 1.00159 0.92397 0.99350 1.23204 1.02841 1.00094 0.90992 1.22453 1.01910 1.00121 0.96009 0.85745 1.19543 0.88048 0.81244 0.78507 1.90693 1.14482 1.74979 1.61549 1.46046 1.10807 1.27388 1.52828 1.21551 0.93340 0.88973 0.95974 1.21308 0.97122 0.94961 0.97540 1.22252 0.99400 0.98449 0.97283 1.20773 0.90477 0.90981 0.93299 1.44049 1.48828 1.02290 1.36344 1.19155 0.96622 0.81824 1.40532 0.91754 1.25030 0.94756 0.97783 1.02165 1.70028 0.98258 1.36853 1.49700 0.86373 0.76609 0.84830 0.78982 1.21056 1.21659 1.20885 1.20884 0.92280 0.93749 0.91138 1.21987 0.98151 0.97443 0.98862 0.93059 0.91206 0.91159 0.85901 0.85982 0.86175 0.86027 0.85682 0.87645 0.87637 0.76384 0.92018 0.91682 0.91365 0.92548 0.93586 0.96567 0.89478 0.93630 0.96533 0.92746 0.92969 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 7.97 37.15 0.30 -0.78 16 2 C -0.06 -0.56 2.55 -155.66 -0.40 -0.95 16 3 C -0.04 -0.39 5.45 -104.62 -0.57 -0.96 16 4 C -0.12 -1.04 9.39 -39.58 -0.37 -1.42 16 5 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 6 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 7 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 8 C -0.11 -0.95 9.27 -39.58 -0.37 -1.32 16 9 C -0.13 -1.21 9.58 -26.73 -0.26 -1.47 16 10 C -0.18 -1.83 5.53 -91.77 -0.51 -2.34 16 11 H 0.12 1.02 6.08 -51.93 -0.32 0.70 16 12 C 0.54 6.97 7.59 -10.99 -0.08 6.88 16 13 O -0.54 -8.52 13.10 5.56 0.07 -8.45 16 14 N -0.72 -8.88 5.27 -60.30 -0.32 -9.20 16 15 C 0.12 1.74 5.07 -4.04 -0.02 1.72 16 16 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 17 C -0.13 -2.40 5.25 -26.61 -0.14 -2.54 16 18 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 19 N -0.59 -14.55 2.99 -172.32 -0.52 -15.07 16 20 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 21 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 22 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 23 N -0.90 -25.93 11.19 55.49 0.62 -25.31 16 24 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 29 C -0.12 -2.08 5.36 -26.61 -0.14 -2.22 16 30 H 0.05 0.45 6.14 -51.93 -0.32 0.13 16 31 H 0.07 0.83 7.01 -51.93 -0.36 0.46 16 32 H 0.07 0.87 7.26 -51.93 -0.38 0.50 16 33 H 0.12 0.93 5.93 -52.48 -0.31 0.62 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.92 6.45 -52.49 -0.34 0.58 16 38 H 0.11 1.00 8.05 -51.93 -0.42 0.58 16 39 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 4.28 7.65 -40.82 -0.31 3.97 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 45 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 2.27 6.03 -51.93 -0.31 1.96 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -31.09 404.43 -11.77 -42.86 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.47 Total: 3.62 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -4.22 Total: -11.11 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.21 Total: -49.57 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.09 -11.77 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569069727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.781 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds