Wall clock time and date at job start Wed Apr 1 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50704 * 115.54986 * 2 1 4 4 C 1.38234 * 120.00147 * 145.87997 * 3 2 1 5 5 C 1.38236 * 119.99877 * 180.25743 * 4 3 2 6 6 C 1.38232 * 120.00057 * 359.51037 * 5 4 3 7 7 C 1.38234 * 119.99987 * 0.27634 * 6 5 4 8 8 C 1.38231 * 119.99664 * 325.66669 * 3 2 1 9 9 C 1.52997 * 117.52029 * 214.29943 * 2 1 3 10 10 C 1.53005 * 60.00249 * 252.51699 * 9 2 1 11 11 H 1.08993 * 117.51861 * 252.51991 * 10 9 2 12 12 C 1.50693 * 117.49845 * 107.48652 * 10 9 2 13 13 O 1.21281 * 119.99970 * 291.38002 * 12 10 9 14 14 N 1.34777 * 120.00230 * 111.38103 * 12 10 9 15 15 C 1.46498 * 120.00321 * 179.97438 * 14 12 10 16 16 C 1.53004 * 109.47051 * 180.02562 * 15 14 12 17 17 C 1.53037 * 109.46010 * 295.07162 * 16 15 14 18 18 C 1.53188 * 109.31382 * 178.61502 * 17 16 15 19 19 N 1.46932 * 108.77462 * 54.62976 * 18 17 16 20 20 C 1.36941 * 120.62831 * 126.36993 * 19 18 17 21 21 H 1.08000 * 119.99917 * 207.70087 * 20 19 18 22 22 C 1.38810 * 120.00063 * 27.70039 * 20 19 18 23 23 N 1.31626 * 119.99765 * 17.35307 * 22 20 19 24 24 Si 1.86799 * 120.00102 * 197.34895 * 22 20 19 25 25 H 1.48496 * 109.47268 * 60.00250 * 24 22 20 26 26 H 1.48505 * 109.46954 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47232 * 300.00153 * 24 22 20 28 28 C 1.46920 * 118.74194 * 306.39436 * 19 18 17 29 29 C 1.53044 * 109.45779 * 175.00127 * 16 15 14 30 30 H 1.08998 * 109.47181 * 34.41854 * 1 2 3 31 31 H 1.09004 * 109.47041 * 154.41808 * 1 2 3 32 32 H 1.08999 * 109.47122 * 274.41301 * 1 2 3 33 33 H 1.08007 * 120.00128 * 0.04001 * 4 3 2 34 34 H 1.08000 * 120.00182 * 179.78587 * 5 4 3 35 35 H 1.08005 * 120.00243 * 180.25745 * 6 5 4 36 36 H 1.08001 * 120.00109 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.00435 * 0.02562 * 8 3 2 38 38 H 1.08995 * 117.49901 * 0.02562 * 9 2 1 39 39 H 1.09000 * 117.50158 * 145.02795 * 9 2 1 40 40 H 0.97000 * 119.99565 * 0.02562 * 14 12 10 41 41 H 1.08994 * 109.47076 * 299.99918 * 15 14 12 42 42 H 1.09001 * 109.46597 * 60.00170 * 15 14 12 43 43 H 1.09005 * 109.45859 * 55.02987 * 16 15 14 44 44 H 1.09009 * 109.49755 * 298.56384 * 17 16 15 45 45 H 1.09000 * 109.50286 * 58.66005 * 17 16 15 46 46 H 1.09000 * 109.58690 * 294.85056 * 18 17 16 47 47 H 1.08997 * 109.59053 * 174.41505 * 18 17 16 48 48 H 0.97005 * 119.99576 * 180.02562 * 23 22 20 49 49 H 1.08992 * 109.58735 * 293.81973 * 28 19 18 50 50 H 1.09003 * 109.58705 * 173.39284 * 28 19 18 51 51 H 1.08997 * 109.49796 * 301.33707 * 29 16 15 52 52 H 1.08999 * 109.49744 * 61.43619 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 6 3.3721 1.5558 0.6715 5 6 3.9656 2.8043 0.6759 6 6 3.3720 3.8542 0.0004 7 6 2.1820 3.6569 -0.6748 8 6 1.5860 2.4095 -0.6752 9 6 2.2368 -1.1209 -0.7646 10 6 2.2364 -1.1207 0.7654 11 1 3.1710 -0.8745 1.2693 12 6 1.3720 -2.1404 1.4611 13 8 0.1638 -2.0533 1.4011 14 7 1.9415 -3.1492 2.1500 15 6 1.1012 -4.1401 2.8268 16 6 1.9903 -5.1681 3.5295 17 6 2.7847 -5.9545 2.4842 18 6 3.6991 -6.9587 3.1928 19 7 2.8830 -7.7939 4.0847 20 6 2.9327 -9.1598 4.0005 21 1 2.0764 -9.7503 4.2912 22 6 4.0837 -9.7854 3.5414 23 7 5.2232 -9.1273 3.5116 24 14 4.0154 -11.5613 2.9662 25 1 3.0665 -11.6774 1.8298 26 1 5.3675 -11.9922 2.5286 27 1 3.5581 -12.4263 4.0833 28 6 2.0122 -7.1358 5.0681 29 6 1.1166 -6.1296 4.3384 30 1 -0.3633 0.8477 -0.5809 31 1 -0.3633 -0.9270 -0.4438 32 1 -0.3633 0.0791 1.0246 33 1 3.8382 0.7345 1.1956 34 1 4.8953 2.9585 1.2034 35 1 3.8377 4.8286 0.0004 36 1 1.7180 4.4772 -1.2022 37 1 0.6561 2.2556 -1.2024 38 1 1.6120 -1.8584 -1.2682 39 1 3.1720 -0.8750 -1.2677 40 1 2.9078 -3.2186 2.1983 41 1 0.4720 -3.6406 3.5633 42 1 0.4720 -4.6444 2.0934 43 1 2.6805 -4.6541 4.1987 44 1 2.0957 -6.4887 1.8299 45 1 3.3890 -5.2665 1.8930 46 1 4.4469 -6.4227 3.7773 47 1 4.1929 -7.5886 2.4530 48 1 6.0274 -9.5644 3.1905 49 1 2.6225 -6.6143 5.8054 50 1 1.3931 -7.8824 5.5655 51 1 0.5338 -5.5661 5.0670 52 1 0.4434 -6.6621 3.6666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569069727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:05 Heat of formation + Delta-G solvation = 9.450796 kcal Electronic energy + Delta-G solvation = -29228.079770 eV Core-core repulsion = 25385.524769 eV Total energy + Delta-G solvation = -3842.555000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.58741 -40.19952 -39.36249 -37.66600 -36.28348 -34.51716 -32.50733 -32.00904 -31.52656 -31.45747 -29.46855 -28.48524 -26.21489 -24.66558 -24.03367 -23.81749 -23.27691 -22.48301 -21.38219 -20.71722 -20.20350 -18.72254 -18.45310 -17.56155 -16.88093 -16.80225 -16.38841 -15.94122 -15.75095 -15.66640 -15.43815 -15.29308 -14.96643 -14.79879 -14.62501 -14.38015 -14.23210 -14.01191 -13.87762 -13.77823 -13.42138 -13.21546 -13.14104 -13.06543 -12.85320 -12.78235 -12.54624 -12.31736 -12.03307 -11.97612 -11.85384 -11.84140 -11.60805 -11.32564 -11.21262 -11.13159 -11.09612 -10.63867 -10.52132 -10.03030 -9.79410 -9.46375 -8.66763 -7.87193 -5.31289 0.42099 0.52877 1.46240 1.48374 1.50937 1.55055 2.15462 2.51398 2.67192 3.06129 3.26839 3.52553 3.58359 3.71655 3.78735 3.86612 3.92299 3.95250 4.04025 4.09080 4.16304 4.28328 4.35129 4.53152 4.54883 4.55442 4.65669 4.69294 4.72961 4.74335 4.80205 4.88012 4.93224 4.94400 4.96514 5.00996 5.04387 5.16838 5.17897 5.21303 5.25529 5.29723 5.37722 5.42106 5.48904 5.57196 5.63987 5.66497 5.66928 5.72532 5.79870 6.13831 6.40154 6.58015 7.16370 7.26946 7.88668 8.39009 9.18669 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.001890 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.627971 B =14814.473596 C =15235.760191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.059 4.059 3 C -0.056 4.056 4 C -0.132 4.132 5 C -0.124 4.124 6 C -0.131 4.131 7 C -0.124 4.124 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.185 4.185 11 H 0.146 0.854 12 C 0.538 3.462 13 O -0.572 6.572 14 N -0.715 5.715 15 C 0.138 3.862 16 C -0.078 4.078 17 C -0.119 4.119 18 C 0.176 3.824 19 N -0.612 5.612 20 C -0.263 4.263 21 H 0.063 0.937 22 C -0.051 4.051 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.276 1.276 28 C 0.141 3.859 29 C -0.116 4.116 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.411 0.589 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.000 1.000 47 H 0.051 0.949 48 H 0.250 0.750 49 H 0.017 0.983 50 H 0.051 0.949 51 H 0.083 0.917 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 26.318 -8.345 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.059 4.059 3 C -0.056 4.056 4 C -0.150 4.150 5 C -0.142 4.142 6 C -0.149 4.149 7 C -0.142 4.142 8 C -0.142 4.142 9 C -0.162 4.162 10 C -0.206 4.206 11 H 0.163 0.837 12 C 0.325 3.675 13 O -0.452 6.452 14 N -0.366 5.366 15 C 0.014 3.986 16 C -0.097 4.097 17 C -0.158 4.158 18 C 0.050 3.950 19 N -0.336 5.336 20 C -0.393 4.393 21 H 0.081 0.919 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.793 3.207 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.202 1.202 28 C 0.015 3.985 29 C -0.155 4.155 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.248 0.752 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.018 0.982 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.101 0.899 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.978 26.282 -8.398 28.037 hybrid contribution 0.727 -1.475 0.030 1.645 sum -4.251 24.807 -8.368 26.523 Atomic orbital electron populations 1.21262 0.90835 1.01475 1.01646 1.20161 0.95071 0.87724 1.02984 1.19085 0.95160 0.92938 0.98416 1.21271 0.95507 0.98376 0.99818 1.21423 1.00632 0.92743 0.99406 1.21494 0.96000 0.99909 0.97526 1.21435 0.96023 0.97233 0.99475 1.21197 1.00615 0.92783 0.99611 1.23254 1.03302 0.99353 0.90269 1.22467 1.02192 0.99436 0.96507 0.83659 1.20018 0.87932 0.81448 0.78088 1.90687 1.16058 1.75767 1.62664 1.45973 1.11208 1.26918 1.52507 1.21271 0.92922 0.88721 0.95695 1.21154 0.96956 0.94752 0.96824 1.22030 0.98658 0.97724 0.97437 1.20607 0.91007 0.91075 0.92313 1.44336 1.49499 1.01943 1.37803 1.19468 0.96500 0.83425 1.39956 0.91893 1.25751 0.94512 1.01531 1.02833 1.70173 0.98626 1.38260 1.50867 0.85389 0.76271 0.80548 0.78541 1.20641 1.21935 1.20186 1.21047 0.92133 0.94413 0.90872 1.21860 0.97547 0.96870 0.99221 0.91473 0.92771 0.93271 0.85117 0.84309 0.84141 0.84116 0.85125 0.88309 0.85882 0.75209 0.91512 0.92832 0.90538 0.93793 0.91055 0.98209 0.93092 0.94121 0.96540 0.93003 0.89868 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 7.97 71.98 0.57 -1.46 16 2 C -0.06 -1.10 2.55 -52.93 -0.13 -1.23 16 3 C -0.06 -0.96 5.45 -19.87 -0.11 -1.07 16 4 C -0.13 -2.04 9.39 22.27 0.21 -1.83 16 5 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 6 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 7 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 8 C -0.12 -1.94 9.27 22.27 0.21 -1.73 16 9 C -0.12 -2.06 9.58 30.59 0.29 -1.77 16 10 C -0.19 -3.40 5.53 -11.54 -0.06 -3.46 16 11 H 0.15 2.02 6.08 -2.39 -0.01 2.01 16 12 C 0.54 13.21 7.59 87.65 0.67 13.88 16 13 O -0.57 -17.87 13.10 -3.03 -0.04 -17.91 16 14 N -0.71 -16.29 5.27 -463.07 -2.44 -18.73 16 15 C 0.14 3.58 5.07 86.38 0.44 4.02 16 16 C -0.08 -2.27 2.19 -10.77 -0.02 -2.29 16 17 C -0.12 -4.15 5.25 30.67 0.16 -3.99 16 18 C 0.18 8.18 5.31 86.36 0.46 8.64 16 19 N -0.61 -30.38 2.99 -699.10 -2.09 -32.47 16 20 C -0.26 -14.51 9.58 84.03 0.81 -13.71 16 21 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 22 C -0.05 -2.84 4.91 84.86 0.42 -2.43 16 23 N -0.93 -54.81 11.19 21.65 0.24 -54.57 16 24 Si 0.96 44.94 29.59 68.60 2.03 46.97 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 C 0.14 5.68 6.52 86.36 0.56 6.24 16 29 C -0.12 -3.65 5.36 30.67 0.16 -3.49 16 30 H 0.07 1.15 6.14 -2.39 -0.01 1.14 16 31 H 0.05 1.30 7.01 -2.39 -0.02 1.28 16 32 H 0.05 1.24 7.26 -2.39 -0.02 1.22 16 33 H 0.13 1.69 5.93 -2.91 -0.02 1.67 16 34 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 36 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.13 1.76 6.45 -2.91 -0.02 1.74 16 38 H 0.10 1.78 8.05 -2.39 -0.02 1.76 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.41 7.77 7.65 -92.71 -0.71 7.06 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.07 2.10 7.15 -2.39 -0.02 2.08 16 46 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.05 2.73 6.03 -2.39 -0.01 2.72 16 48 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 49 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.05 2.07 7.93 -2.39 -0.02 2.06 16 51 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -68.36 404.43 3.20 -65.17 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.20 Total: 21.47 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 5.29 Total: -9.93 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.29 Total: -105.76 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.04 Total: -17.91 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.36 3.20 -65.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569069727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.617 kcal (2) G-P(sol) polarization free energy of solvation -68.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds