Wall clock time and date at job start Wed Apr 1 2020 02:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 112.97092 * 2 1 4 4 C 1.51509 * 113.69120 * 228.50092 * 2 1 3 5 5 O 1.21286 * 134.17477 * 65.61103 * 4 2 1 6 6 N 1.35825 * 91.65164 * 245.57386 * 4 2 1 7 7 C 1.47388 * 95.24186 * 0.02562 * 6 4 2 8 8 H 1.09004 * 113.79848 * 245.58825 * 7 6 4 9 9 C 1.52999 * 113.70821 * 114.40251 * 7 6 4 10 10 C 1.53116 * 109.52504 * 90.51452 * 9 7 6 11 11 C 1.53037 * 109.27749 * 182.44086 * 10 9 7 12 12 N 1.46846 * 109.52649 * 59.17485 * 11 10 9 13 13 C 1.46898 * 111.00219 * 174.16020 * 12 11 10 14 14 C 1.50704 * 109.47249 * 169.99892 * 13 12 11 15 15 C 1.38632 * 119.74869 * 269.72621 * 14 13 12 16 16 C 1.37624 * 120.24448 * 179.76161 * 15 14 13 17 17 C 1.40715 * 119.74536 * 0.48931 * 16 15 14 18 18 C 1.41392 * 120.24365 * 179.78985 * 17 16 15 19 19 H 1.07999 * 120.00131 * 28.78567 * 18 17 16 20 20 C 1.39948 * 120.00083 * 208.79307 * 18 17 16 21 21 N 1.30831 * 119.99670 * 10.91584 * 20 18 17 22 22 Si 1.86796 * 120.00259 * 190.91764 * 20 18 17 23 23 H 1.48508 * 109.47060 * 89.99720 * 22 20 18 24 24 H 1.48493 * 109.47350 * 209.99575 * 22 20 18 25 25 H 1.48501 * 109.46885 * 330.00164 * 22 20 18 26 26 C 1.40719 * 119.51055 * 359.76703 * 17 16 15 27 27 C 1.37616 * 119.74355 * 359.97438 * 26 17 16 28 28 C 1.46849 * 111.19567 * 298.26131 * 12 11 10 29 29 C 1.53032 * 109.52570 * 61.74278 * 28 12 11 30 30 H 1.09002 * 109.46898 * 268.77596 * 1 2 3 31 31 H 1.08992 * 109.46993 * 28.77888 * 1 2 3 32 32 H 1.08999 * 109.47117 * 148.77896 * 1 2 3 33 33 H 1.09000 * 109.47039 * 191.49307 * 3 2 1 34 34 H 1.08997 * 109.47249 * 311.49807 * 3 2 1 35 35 H 1.09001 * 109.46935 * 71.49867 * 3 2 1 36 36 H 0.97005 * 132.38239 * 180.02562 * 6 4 2 37 37 H 1.09003 * 109.51603 * 210.63989 * 9 7 6 38 38 H 1.08996 * 109.50844 * 62.49521 * 10 9 7 39 39 H 1.09000 * 109.53198 * 302.39628 * 10 9 7 40 40 H 1.09004 * 109.46397 * 299.15826 * 11 10 9 41 41 H 1.09005 * 109.46007 * 179.19228 * 11 10 9 42 42 H 1.09003 * 109.46764 * 50.00078 * 13 12 11 43 43 H 1.08998 * 109.47125 * 289.99989 * 13 12 11 44 44 H 1.07998 * 119.87774 * 0.02562 * 15 14 13 45 45 H 1.07998 * 120.12631 * 180.27929 * 16 15 14 46 46 H 0.97001 * 119.99658 * 180.02562 * 21 20 18 47 47 H 1.07997 * 120.12254 * 180.02562 * 26 17 16 48 48 H 1.08000 * 119.87085 * 180.02562 * 27 26 17 49 49 H 1.09007 * 109.45737 * 181.75625 * 28 12 11 50 50 H 1.09000 * 109.46072 * 301.71999 * 28 12 11 51 51 H 1.09007 * 109.50167 * 180.88167 * 29 28 12 52 52 H 1.08991 * 109.50799 * 60.75899 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1272 1.4087 0.0000 4 6 2.1388 -0.9193 -1.0391 5 8 2.1495 -0.9344 -2.2518 6 7 2.6687 -1.7194 -0.0779 7 6 2.1472 -0.9331 1.0544 8 1 2.9235 -0.4608 1.6564 9 6 1.1116 -1.6803 1.8971 10 6 1.8185 -2.4323 3.0281 11 6 0.7849 -3.2261 3.8303 12 7 0.0973 -4.1733 2.9434 13 6 -0.8039 -5.0484 3.7049 14 6 -1.6677 -5.8323 2.7508 15 6 -2.8904 -5.3175 2.3483 16 6 -3.6852 -6.0225 1.4736 17 6 -3.2573 -7.2749 0.9957 18 6 -4.0676 -8.0102 0.1001 19 1 -4.7376 -7.4932 -0.5708 20 6 -4.0014 -9.4080 0.0831 21 7 -3.3590 -10.0440 1.0289 22 14 -4.8300 -10.3657 -1.2901 23 1 -3.8727 -10.5545 -2.4095 24 1 -5.2612 -11.6914 -0.7786 25 1 -6.0149 -9.6124 -1.7737 26 6 -2.0168 -7.7900 1.4153 27 6 -1.2360 -7.0651 2.2864 28 6 -0.6278 -3.4713 1.8767 29 6 0.3636 -2.6849 1.0162 30 1 -0.3633 -0.0220 1.0275 31 1 -0.3633 0.9007 -0.4947 32 1 -0.3633 -0.8788 -0.5327 33 1 3.1962 1.3502 -0.2048 34 1 1.6421 2.0089 -0.7697 35 1 1.9687 1.8704 0.9746 36 1 3.2040 -2.5272 -0.1214 37 1 0.4037 -0.9676 2.3202 38 1 2.3177 -1.7185 3.6834 39 1 2.5552 -3.1161 2.6064 40 1 0.0568 -2.5404 4.2637 41 1 1.2869 -3.7741 4.6277 42 1 -1.4364 -4.4424 4.3536 43 1 -0.2152 -5.7367 4.3114 44 1 -3.2184 -4.3578 2.7193 45 1 -4.6353 -5.6176 1.1578 46 1 -3.3129 -11.0129 1.0169 47 1 -1.6785 -8.7500 1.0544 48 1 -0.2834 -7.4583 2.6095 49 1 -1.1519 -4.1975 1.2552 50 1 -1.3492 -2.7844 2.3193 51 1 -0.1767 -2.1514 0.2340 52 1 1.0770 -3.3726 0.5623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572054785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:15 Heat of formation + Delta-G solvation = 8.045082 kcal Electronic energy + Delta-G solvation = -30387.383043 eV Core-core repulsion = 26544.767087 eV Total energy + Delta-G solvation = -3842.615957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.69433 -38.94746 -37.52613 -36.69495 -34.16884 -32.95737 -32.84111 -30.89256 -30.09281 -29.24154 -27.83355 -27.32537 -25.58110 -24.20099 -23.33730 -22.73632 -21.51403 -20.98481 -19.87404 -19.50948 -18.11023 -17.28739 -17.20677 -16.68151 -16.11285 -15.49625 -15.31312 -14.92758 -14.68406 -14.48265 -14.08658 -14.02461 -13.75264 -13.46116 -13.29667 -13.20360 -12.84130 -12.80687 -12.50521 -12.41324 -12.24859 -12.00501 -11.93861 -11.75221 -11.56912 -11.52018 -11.16488 -11.12815 -11.02759 -10.92547 -10.71678 -10.57674 -10.34063 -10.21105 -10.01834 -9.84643 -9.57336 -9.35443 -9.26983 -9.19013 -7.94920 -7.46064 -7.22577 -6.70812 -4.37148 2.38534 2.72881 3.04401 3.06909 3.08074 3.11290 3.16694 3.68909 3.94593 4.10484 4.27574 4.40979 4.60895 4.65257 4.70868 4.87904 4.95936 5.11403 5.26462 5.33578 5.36039 5.43327 5.48599 5.55102 5.56868 5.66733 5.67117 5.69066 5.73447 5.76547 5.86764 5.88704 5.94574 5.99606 6.08266 6.18681 6.21814 6.25987 6.33223 6.43038 6.48200 6.55359 6.77849 6.94508 7.08736 7.27543 7.33640 7.47714 7.50489 7.61424 7.85357 8.05982 8.11551 8.21019 8.30051 8.65020 8.90286 8.96687 10.23309 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.002600 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.364993 B =10766.048494 C =11886.835497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C -0.126 4.126 4 C 0.536 3.464 5 O -0.508 6.508 6 N -0.736 5.736 7 C 0.146 3.854 8 H 0.098 0.902 9 C -0.094 4.094 10 C -0.108 4.108 11 C 0.055 3.945 12 N -0.532 5.532 13 C 0.120 3.880 14 C -0.209 4.209 15 C -0.087 4.087 16 C -0.222 4.222 17 C 0.112 3.888 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.801 5.801 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.160 4.160 27 C -0.082 4.082 28 C 0.057 3.943 29 C -0.121 4.121 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.403 0.597 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.279 0.721 47 H 0.118 0.882 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.023 0.977 51 H 0.074 0.926 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 17.771 4.499 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C -0.184 4.184 4 C 0.320 3.680 5 O -0.381 6.381 6 N -0.395 5.395 7 C 0.042 3.958 8 H 0.116 0.884 9 C -0.113 4.113 10 C -0.145 4.145 11 C -0.073 4.073 12 N -0.257 5.257 13 C -0.007 4.007 14 C -0.211 4.211 15 C -0.106 4.106 16 C -0.242 4.242 17 C 0.110 3.890 18 C -0.494 4.494 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.427 5.427 22 Si 0.735 3.265 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.180 4.180 27 C -0.101 4.101 28 C -0.071 4.071 29 C -0.158 4.158 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.244 0.756 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.136 0.864 48 H 0.106 0.894 49 H 0.114 0.886 50 H 0.041 0.959 51 H 0.093 0.907 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.966 17.207 3.695 20.736 hybrid contribution -0.687 -0.603 -0.019 0.914 sum 10.279 16.604 3.675 19.871 Atomic orbital electron populations 1.21931 0.91009 1.03128 1.03444 1.22957 0.98458 0.96777 0.94215 1.21578 1.00726 0.93102 1.03018 1.22088 0.77170 0.82187 0.86561 1.90755 1.60848 1.74511 1.11969 1.48675 1.54640 1.28858 1.07375 1.22649 0.95034 0.89017 0.89131 0.88396 1.21527 0.96480 0.97435 0.95859 1.21606 0.98070 0.98376 0.96490 1.22033 0.96195 0.94047 0.95074 1.62087 1.30993 1.20123 1.12471 1.20739 0.92370 0.93785 0.93761 1.18876 0.97065 0.97606 1.07505 1.20356 0.94460 0.97408 0.98366 1.20986 0.99790 0.99158 1.04242 1.17639 0.90938 0.90562 0.89901 1.19590 1.20694 0.90974 1.18116 0.90611 1.25886 0.94351 0.98412 0.95676 1.69798 1.34127 1.09930 1.28891 0.86283 0.80174 0.78778 0.81287 1.19347 1.20333 1.18706 1.21364 0.94488 1.00773 1.01342 1.20516 0.97727 0.94001 0.97876 1.22146 0.94391 0.96624 0.93943 1.21982 0.98743 0.97316 0.97765 0.90539 0.91600 0.90804 0.92202 0.91281 0.91076 0.75576 0.89623 0.91813 0.91239 0.95513 0.91196 0.96020 0.91642 0.89991 0.89134 0.91002 0.86371 0.89431 0.88646 0.95925 0.90744 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.87 37.16 0.29 -0.86 16 2 C -0.12 -1.02 1.39 -154.92 -0.22 -1.23 16 3 C -0.13 -0.83 9.08 37.16 0.34 -0.49 16 4 C 0.54 6.47 8.44 -10.28 -0.09 6.39 16 5 O -0.51 -8.32 18.03 5.55 0.10 -8.22 16 6 N -0.74 -7.11 5.77 -57.52 -0.33 -7.45 16 7 C 0.15 1.13 4.10 -67.23 -0.28 0.85 16 8 H 0.10 0.58 7.97 -51.93 -0.41 0.16 16 9 C -0.09 -0.83 1.76 -90.50 -0.16 -0.99 16 10 C -0.11 -0.97 5.36 -26.65 -0.14 -1.11 16 11 C 0.05 0.63 5.42 -3.83 -0.02 0.61 16 12 N -0.53 -7.93 4.80 -236.11 -1.13 -9.06 16 13 C 0.12 2.03 5.42 -4.98 -0.03 2.00 16 14 C -0.21 -4.34 4.13 -104.33 -0.43 -4.77 16 15 C -0.09 -1.86 7.77 -39.66 -0.31 -2.17 16 16 C -0.22 -5.33 9.80 -38.87 -0.38 -5.72 16 17 C 0.11 2.96 5.55 -106.82 -0.59 2.36 16 18 C -0.46 -12.31 9.06 -37.74 -0.34 -12.65 16 19 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 20 C 0.07 1.85 5.25 -17.34 -0.09 1.76 16 21 N -0.80 -20.83 10.85 55.55 0.60 -20.23 16 22 Si 0.91 18.91 29.57 -169.99 -5.03 13.88 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.16 -4.12 8.66 -38.87 -0.34 -4.46 16 27 C -0.08 -1.88 9.67 -39.66 -0.38 -2.27 16 28 C 0.06 0.84 4.57 -3.84 -0.02 0.82 16 29 C -0.12 -1.45 4.41 -26.65 -0.12 -1.57 16 30 H 0.08 0.55 6.02 -51.93 -0.31 0.24 16 31 H 0.07 0.49 7.86 -51.93 -0.41 0.08 16 32 H 0.07 0.75 5.51 -51.93 -0.29 0.46 16 33 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.07 0.46 8.02 -51.93 -0.42 0.04 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.40 3.63 8.96 -40.82 -0.37 3.26 16 37 H 0.09 0.70 6.50 -51.93 -0.34 0.36 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.02 0.35 8.02 -51.93 -0.42 -0.06 16 43 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 44 H 0.08 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 46 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 47 H 0.12 3.18 6.23 -52.49 -0.33 2.85 16 48 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 49 H 0.10 1.76 5.65 -51.92 -0.29 1.47 16 50 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 51 H 0.07 0.89 4.41 -51.92 -0.23 0.66 16 52 H 0.07 0.97 7.34 -51.93 -0.38 0.59 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -29.32 395.86 -11.50 -40.82 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.38 Total: 7.78 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.30 Total: -23.48 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.86 Total: -36.74 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.10 Total: -8.22 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.32 -11.50 -40.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572054785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.863 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds