Wall clock time and date at job start Wed Apr 1 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99884 * 2 1 4 4 C 1.38217 * 119.99909 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99901 * 359.85087 * 4 3 2 6 6 C 1.38218 * 120.00014 * 0.40388 * 5 4 3 7 7 C 1.50699 * 120.00070 * 179.80293 * 6 5 4 8 8 H 1.08994 * 115.54788 * 154.14202 * 7 6 5 9 9 C 1.52998 * 117.51666 * 8.44538 * 7 6 5 10 10 C 1.52993 * 60.00046 * 252.51668 * 9 7 6 11 11 H 1.09007 * 117.50414 * 107.48975 * 10 9 7 12 12 C 1.50697 * 117.50271 * 252.51168 * 10 9 7 13 13 O 1.21287 * 119.99920 * 68.61701 * 12 10 9 14 14 N 1.34775 * 120.00512 * 248.62568 * 12 10 9 15 15 C 1.46501 * 120.00495 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47260 * 179.97438 * 15 14 12 17 17 C 1.53033 * 109.46007 * 295.02530 * 16 15 14 18 18 C 1.53200 * 109.31472 * 178.60084 * 17 16 15 19 19 N 1.46923 * 108.76218 * 54.65442 * 18 17 16 20 20 C 1.36936 * 120.62946 * 126.36292 * 19 18 17 21 21 H 1.07997 * 120.00018 * 207.69291 * 20 19 18 22 22 C 1.38809 * 119.99981 * 27.70081 * 20 19 18 23 23 N 1.31621 * 120.00455 * 17.34882 * 22 20 19 24 24 Si 1.86801 * 120.00168 * 197.35095 * 22 20 19 25 25 H 1.48498 * 109.47196 * 89.99665 * 24 22 20 26 26 H 1.48496 * 109.47337 * 209.99929 * 24 22 20 27 27 H 1.48503 * 109.46871 * 329.99812 * 24 22 20 28 28 C 1.46924 * 118.74019 * 306.38381 * 19 18 17 29 29 C 1.53038 * 109.45949 * 174.96776 * 16 15 14 30 30 C 1.38213 * 120.00065 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.46709 * 269.97583 * 1 2 3 32 32 H 1.09001 * 109.47096 * 29.97482 * 1 2 3 33 33 H 1.09001 * 109.47129 * 149.97723 * 1 2 3 34 34 H 1.07998 * 120.00511 * 0.02562 * 3 2 1 35 35 H 1.07996 * 120.00078 * 180.02562 * 4 3 2 36 36 H 1.07999 * 120.00386 * 180.20739 * 5 4 3 37 37 H 1.09000 * 117.50085 * 0.02562 * 9 7 6 38 38 H 1.08998 * 117.49866 * 145.02862 * 9 7 6 39 39 H 0.97001 * 119.99501 * 359.97438 * 14 12 10 40 40 H 1.09001 * 109.46564 * 299.99246 * 15 14 12 41 41 H 1.08998 * 109.47422 * 59.99220 * 15 14 12 42 42 H 1.09007 * 109.46014 * 54.99887 * 16 15 14 43 43 H 1.09002 * 109.50045 * 298.56587 * 17 16 15 44 44 H 1.09003 * 109.50110 * 58.66281 * 17 16 15 45 45 H 1.09001 * 109.59324 * 294.86695 * 18 17 16 46 46 H 1.08993 * 109.58509 * 174.43468 * 18 17 16 47 47 H 0.96996 * 120.00635 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.59018 * 293.82279 * 28 19 18 49 49 H 1.09000 * 109.58840 * 173.39973 * 28 19 18 50 50 H 1.08996 * 109.50197 * 301.33788 * 29 16 15 51 51 H 1.09001 * 109.49793 * 61.40420 * 29 16 15 52 52 H 1.07997 * 119.99716 * 359.97419 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0042 6 6 3.5806 -1.1970 -0.0011 7 6 4.3341 -2.5021 -0.0016 8 1 3.8013 -3.3526 0.4233 9 6 5.8492 -2.4436 0.2031 10 6 5.2759 -2.7736 -1.1764 11 1 5.3507 -2.0082 -1.9489 12 6 5.3957 -4.1967 -1.6576 13 8 4.7586 -5.0755 -1.1164 14 7 6.2110 -4.4930 -2.6891 15 6 6.3279 -5.8765 -3.1565 16 6 7.3092 -5.9377 -4.3287 17 6 6.7372 -5.1563 -5.5137 18 6 7.7376 -5.1903 -6.6734 19 7 8.0638 -6.5906 -6.9753 20 6 7.9293 -7.0797 -8.2472 21 1 7.7280 -8.1292 -8.4038 22 6 8.0520 -6.2267 -9.3354 23 7 8.6230 -5.0500 -9.1882 24 14 7.4067 -6.7488 -11.0089 25 1 5.9915 -6.3214 -11.1491 26 1 8.2233 -6.1140 -12.0744 27 1 7.4924 -8.2261 -11.1335 28 6 8.5366 -7.4564 -5.8865 29 6 7.5273 -7.3968 -4.7355 30 6 2.1981 -1.1970 -0.0005 31 1 -0.3633 -0.0004 1.0278 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1326 0.0010 36 1 5.3517 -0.0001 0.0080 37 1 6.3013 -1.4611 0.3387 38 1 6.3131 -3.2558 0.7627 39 1 6.7203 -3.7901 -3.1220 40 1 6.6925 -6.5049 -2.3439 41 1 5.3509 -6.2340 -3.4818 42 1 8.2606 -5.4981 -4.0292 43 1 5.7980 -5.6105 -5.8298 44 1 6.5600 -4.1226 -5.2165 45 1 8.6447 -4.6568 -6.3894 46 1 7.2949 -4.7207 -7.5517 47 1 8.7084 -4.4537 -9.9485 48 1 9.5088 -7.1079 -5.5383 49 1 8.6210 -8.4821 -6.2456 50 1 7.9126 -7.9581 -3.8843 51 1 6.5806 -7.8299 -5.0584 52 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599576842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:58 Heat of formation + Delta-G solvation = 14.394940 kcal Electronic energy + Delta-G solvation = -28721.889050 eV Core-core repulsion = 24879.548444 eV Total energy + Delta-G solvation = -3842.340606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.48526 -39.47126 -37.96438 -36.67258 -34.90289 -32.91961 -32.78986 -31.17682 -30.62548 -29.85851 -27.36049 -27.05880 -24.84732 -23.90874 -23.31915 -22.37706 -22.19625 -21.01663 -20.36848 -19.79645 -19.08585 -17.68473 -16.94970 -16.70702 -15.96630 -15.56464 -15.34287 -15.08082 -14.83314 -14.34397 -14.25903 -14.08138 -13.91589 -13.55362 -13.49010 -13.42264 -13.07003 -12.80954 -12.61919 -12.49357 -12.39415 -12.32342 -12.18591 -11.85910 -11.58277 -11.40250 -11.23450 -11.01683 -10.90728 -10.74023 -10.71644 -10.52580 -10.24486 -10.22542 -9.96825 -9.86706 -9.56093 -9.44910 -9.03288 -8.97517 -8.78759 -8.47512 -6.68397 -5.79747 -3.21598 0.99296 1.10149 2.44935 3.10318 3.36794 3.37474 3.44534 3.45483 3.78668 4.23171 4.44149 4.49267 4.54406 4.58614 4.65051 4.81365 4.82255 4.94423 5.04178 5.11543 5.14961 5.24229 5.27115 5.34576 5.35536 5.41333 5.43098 5.50921 5.57712 5.64921 5.72529 5.80079 5.86005 5.86944 5.91437 6.05566 6.14746 6.18409 6.28239 6.29615 6.35309 6.42384 6.53015 6.56992 6.66795 6.71846 6.75520 6.81216 6.97696 7.35252 7.53771 7.63621 7.79129 8.22411 8.44445 9.20907 9.84520 10.40950 11.28731 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.001907 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.944775 B =14677.691946 C =15653.199658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.048 4.048 7 C -0.084 4.084 8 H 0.126 0.874 9 C -0.144 4.144 10 C -0.177 4.177 11 H 0.126 0.874 12 C 0.540 3.460 13 O -0.546 6.546 14 N -0.718 5.718 15 C 0.124 3.876 16 C -0.090 4.090 17 C -0.135 4.135 18 C 0.170 3.830 19 N -0.592 5.592 20 C -0.251 4.251 21 H 0.066 0.934 22 C 0.001 3.999 23 N -0.904 5.904 24 Si 0.902 3.098 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.146 3.854 29 C -0.125 4.125 30 C -0.110 4.110 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.403 0.597 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.017 0.983 46 H 0.087 0.913 47 H 0.253 0.747 48 H 0.017 0.983 49 H 0.054 0.946 50 H 0.052 0.948 51 H 0.060 0.940 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 11.863 21.248 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.144 4.144 6 C -0.048 4.048 7 C -0.103 4.103 8 H 0.144 0.856 9 C -0.181 4.181 10 C -0.198 4.198 11 H 0.144 0.856 12 C 0.326 3.674 13 O -0.424 6.424 14 N -0.369 5.369 15 C 0.001 3.999 16 C -0.109 4.109 17 C -0.174 4.174 18 C 0.045 3.955 19 N -0.315 5.315 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.198 4.198 23 N -0.548 5.548 24 Si 0.732 3.268 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.020 3.980 29 C -0.165 4.165 30 C -0.128 4.128 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.079 0.921 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.123 11.311 21.465 26.290 hybrid contribution 0.002 0.222 -1.239 1.259 sum -10.122 11.534 20.226 25.389 Atomic orbital electron populations 1.20807 0.91129 1.02932 1.02349 1.19921 0.96143 0.93049 0.99341 1.21045 0.94329 0.97483 1.01491 1.21106 0.94290 0.97901 0.99834 1.21058 1.00046 0.91909 1.01338 1.19110 0.93314 0.92910 0.99430 1.21061 0.91861 0.96836 1.00492 0.85571 1.23126 0.95473 1.03692 0.95852 1.22364 1.07549 0.96153 0.93707 0.85649 1.19565 0.79002 0.89052 0.79746 1.90686 1.45486 1.49001 1.57269 1.46003 1.45627 1.11154 1.34099 1.21571 1.00353 0.81518 0.96498 1.21307 0.97632 0.98064 0.93921 1.22258 1.00863 0.97502 0.96809 1.20774 0.93878 0.85832 0.95054 1.44056 1.75466 1.07462 1.04544 1.19206 1.42111 0.94529 0.82196 0.91674 1.25031 0.99383 0.97545 0.97812 1.70031 1.44454 1.10091 1.30255 0.86290 0.78548 0.78058 0.83895 1.21469 1.21790 1.20435 1.20886 0.93461 0.95162 0.88537 1.21987 1.01327 0.94252 0.98884 1.20893 0.93348 0.97825 1.00702 0.91143 0.91515 0.91385 0.86183 0.85981 0.85843 0.87368 0.87702 0.76244 0.91977 0.91643 0.91304 0.92525 0.93608 0.96530 0.89474 0.93676 0.96508 0.92728 0.92954 0.92073 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.08 -0.72 5.88 -104.62 -0.62 -1.33 16 3 C -0.13 -1.00 9.70 -39.58 -0.38 -1.38 16 4 C -0.11 -0.89 10.05 -39.58 -0.40 -1.29 16 5 C -0.13 -1.05 9.30 -39.58 -0.37 -1.42 16 6 C -0.05 -0.45 5.61 -104.62 -0.59 -1.04 16 7 C -0.08 -0.82 5.55 -91.77 -0.51 -1.33 16 8 H 0.13 1.39 7.67 -51.93 -0.40 0.99 16 9 C -0.14 -1.19 9.56 -26.74 -0.26 -1.45 16 10 C -0.18 -1.77 5.82 -91.78 -0.53 -2.31 16 11 H 0.13 1.11 8.14 -51.92 -0.42 0.68 16 12 C 0.54 7.19 7.61 -10.99 -0.08 7.10 16 13 O -0.55 -9.21 16.26 5.55 0.09 -9.11 16 14 N -0.72 -9.05 5.27 -60.29 -0.32 -9.36 16 15 C 0.12 1.75 5.06 -4.04 -0.02 1.73 16 16 C -0.09 -1.41 2.19 -90.58 -0.20 -1.61 16 17 C -0.13 -2.43 5.25 -26.61 -0.14 -2.57 16 18 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 19 N -0.59 -14.59 2.99 -172.32 -0.52 -15.11 16 20 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 21 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 22 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 23 N -0.90 -26.00 11.19 55.49 0.62 -25.38 16 24 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 29 C -0.12 -2.08 5.36 -26.61 -0.14 -2.23 16 30 C -0.11 -1.04 9.39 -39.58 -0.37 -1.41 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.83 6.02 -52.49 -0.32 0.51 16 37 H 0.11 0.68 6.18 -51.93 -0.32 0.36 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.40 4.36 7.65 -40.82 -0.31 4.05 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.72 7.15 -51.93 -0.37 0.35 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 52 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 414.04 15.07 6.24 6.24 Total: -1.00 -31.81 414.04 -12.19 -44.00 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.75 Total: 3.15 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -4.52 Total: -11.06 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.21 Total: -49.85 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.81 -12.19 -44.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599576842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.394 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds